Oarm002002.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- -
- Assembly
- GCA_958009045.1
- Location
- OY253744.1:36999222-37001864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00044 0.04 14.6 0.2 1 20 144 163 144 164 0.95 2 13 0.0018 0.17 12.7 3.5 1 23 172 195 172 195 0.93 3 13 2.9e-06 0.00026 21.5 1.4 1 23 201 223 201 223 0.98 4 13 0.00014 0.013 16.1 0.9 1 23 357 379 357 379 0.96 5 13 7e-06 0.00063 20.3 0.5 2 22 389 409 388 409 0.96 6 13 0.00085 0.077 13.7 3.2 1 20 429 448 429 451 0.93 7 13 0.16 15 6.5 2.1 1 23 456 479 456 479 0.95 8 13 2.4e-06 0.00022 21.7 1.4 1 23 485 507 485 507 0.98 9 13 0.0021 0.19 12.5 6.3 1 23 514 536 514 536 0.98 10 13 0.00035 0.032 14.9 0.4 3 23 544 564 542 564 0.97 11 13 0.0004 0.037 14.7 0.2 1 23 570 593 570 593 0.96 12 13 0.49 45 5.0 0.1 1 23 607 629 607 629 0.93 13 13 0.11 9.6 7.1 0.0 2 23 858 879 857 879 0.96
Sequence Information
- Coding Sequence
- ATGGATAATCACGATTACGTTGAATTTCCATTAACGACGATAAACGAAACACTACAGGATGAGATATCGCACGAGGAGATATGCGAGCCAACGAAAGATCCTTTGACAACGGAAGAAAATAATCTTACCGACGCTATAGTCGATAACGTCGATTCGATGATAAAAGATTCCGGTGTAACGTTGAAAATAGCTAATGTAAATTCGGACGAGGATGAAAAATCGTCGATATATCCGATATACATAAAAGAAGAGGAGCATCACAATTACACATCGGGCGACGATGAATCAATGGCGGTCGAGGCGTTGCGTCAATTGGGCGGTATGTATCCCTGTTTCGAGGAGAAAAAACGTTCCTGCGAGCGATGCAAGCTCCAGATAACACAATCGGAGATATCGAAGCACGAGGAGGCGTGCCGTTCGAGCGTAAAATTTTCGTGCACAACGTGCGGCGAAAATTTTCCAAGAAAGCAAGATCTGAGCAATCACGTTGTTTGCCATCAGGTCAACAGACCTCATGCCTGTCGTAAATGCGGAAATTTATTTCGTTCAAAGGCCCATTTACAGAATCACATGACGCAAGTACATCGCGCGGAAAAACCTCACAAATGTACGATATGCGGTTCGGACTTTAATCGCCCGTCGTCATTGTCAAATCACATGAAGATTCATACGTACGTGGCCGGTAGAGCGTTATTGCAGAATCAAACGTCGGACGGGAGCGGTGATTGCGAGAAAAAGTGGCCGGAAGACGAGACTAGCGTGACAACGACGAATTACGATGTACAATGGTCGATACCGTACAATTTTGATACAAACGTCACCGGGATAATCGATAATACCGAGAAAGTCAATAATCTCCAAGAATTTACGGTCATGCCAAACGGCGAAGTGGCGCAATTTGAATATTCGTCGCAGGATCCATTGAATCCATCATTGACGCAGTACAACATtggtttgaataatttttcaaacgcggaAACCCTGGAAAAATTGGAAAGTCTCGAATTCCCGACGGATGTACCGAAAGTATGTACGAGCCTCGATGAAAACACGTTAAACCGTAAGATTCACGCGTGTCGTCATTGCGGGGCAAATTTTAATCGTCCGAGCGCGCTGGCGTCGCACGAAAAAATTCACGTCAGTAAGATATGGTCGATGCCCGTCGAGTGCGAATATTGCGACAAGCAATTTCAGGACTCGTCCCATTTGTCGGCGCATCAGCGTACGTGcgcgaaaaaaatgatgcaaacgAGCGTGGAGAACGGGACGGGCAAGTGGGGCAAACACTCGTGCGGACAGTGCGGCAAAAAATTTACGACAAAACAAAAGATGTTTCGTCATCAGTGGATACATCGAAAGAAGACGCATTCCTGTGAGATTTGTGGCTCGCAATACGAGAAGCAATGTCAATTGGACGAGCATCGTTTGTCGGCGCATCCCGGTGATTCGCCGTTCACGTGCACCGAGTGCGGCAAATGTTTCGTCTCGAGGCAGGGTCTTTGGGAACACGGTAGAACGCACGCCGGTAGTCCGGCGCACTTTCATTGCGACACATGCTCGAAAACCTTTTCATCGAGACAGGGCTATCTCATACATCATCGTACGCACACGGGCGAGAGACCGTACGGTTGTAAATTTTGTTGGAAGGCATTTCGCGACGGTGGTACATTGAGAAAGCACGAGCGTATACACACGGGCGAACGTCCCCACGTCTGTCCATTGTGTTCCCGAGCTttcaatcaaaaggtcgtattgCGCGAGCACGTTAGGTGGGTTCACGCTGCCGGTAAGAATGAGACCGAGACTAACGGTCCGCCGTATCCGTGTCCATTGTGCGGTGCTCTTAATCAGGACAGGGACGAGCTTTGCGCTCATATCGTAAAGCACAGCGATCAAATGATCGCCGAGGCAAAGGCAAAGAGCAACGACAACGCGTCGAAGTCGAaggaaacgaggaaaaaaggaaaatccgGTGTTACGAGCTTCAGGAGAATCGAGCCGAGGATCGATGGTACGAGCGTAAAAACGGACGAGACCGAGACGGCTTTGCTCGCGATTGCCGACGACAGTACGGTCGATGATACGTCGTTGAAGTGCGAAATCGTCGACGAACGTTTAACGTTGAACGACGAGAAAAATATTATCGGAGGGATTAAGGCCGAGGTGGGCATTGTTAATGAACGATCCAACGATCAGACACTCGTTATTTCCGGGCAAACTGCCATTATAACGAAAATACGACAGAGCGACGTTTTGCAAATTATACAAAATGCTAAATGCACCGACACGCTCCGTCTCGTTGCCACTGGCGGAGCTAACAATACCCTTCATTTGATAACGAAGCAGAATCAATCGTTGCCCGTTTTAACGATCAAAAATCCGCAGAGCCACGAGCATTTTTCCAGTCAGAGTGTCGGCGATAATGCCACGAGGGATCACGAGGATATGGAGGATTGCGGCGCGCAAGATGGCCGTGTCATCGATGAGGATACGGACCGTAGCAACATTCAGCGGGTTGAACAATATCTTCGCGAAGACCAGAGCGACGATGATGATGTCGATGACGAAATGGTTTGCGGCATATGTGGCGATGATTTTGATGACAAAAATGTTCTTATGGAACACGTTAAGATACATATATAA
- Protein Sequence
- MDNHDYVEFPLTTINETLQDEISHEEICEPTKDPLTTEENNLTDAIVDNVDSMIKDSGVTLKIANVNSDEDEKSSIYPIYIKEEEHHNYTSGDDESMAVEALRQLGGMYPCFEEKKRSCERCKLQITQSEISKHEEACRSSVKFSCTTCGENFPRKQDLSNHVVCHQVNRPHACRKCGNLFRSKAHLQNHMTQVHRAEKPHKCTICGSDFNRPSSLSNHMKIHTYVAGRALLQNQTSDGSGDCEKKWPEDETSVTTTNYDVQWSIPYNFDTNVTGIIDNTEKVNNLQEFTVMPNGEVAQFEYSSQDPLNPSLTQYNIGLNNFSNAETLEKLESLEFPTDVPKVCTSLDENTLNRKIHACRHCGANFNRPSALASHEKIHVSKIWSMPVECEYCDKQFQDSSHLSAHQRTCAKKMMQTSVENGTGKWGKHSCGQCGKKFTTKQKMFRHQWIHRKKTHSCEICGSQYEKQCQLDEHRLSAHPGDSPFTCTECGKCFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETETNGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKSNDNASKSKETRKKGKSGVTSFRRIEPRIDGTSVKTDETETALLAIADDSTVDDTSLKCEIVDERLTLNDEKNIIGGIKAEVGIVNERSNDQTLVISGQTAIITKIRQSDVLQIIQNAKCTDTLRLVATGGANNTLHLITKQNQSLPVLTIKNPQSHEHFSSQSVGDNATRDHEDMEDCGAQDGRVIDEDTDRSNIQRVEQYLREDQSDDDDVDDEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -