Oarm001086.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- zfh1
- Assembly
- GCA_958009045.1
- Location
- OY253744.1:24162376-24165110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.4e-05 0.0049 17.5 0.1 2 23 126 148 125 148 0.96 2 17 5.4e-05 0.0049 17.5 0.7 1 23 152 174 152 174 0.98 3 17 0.0025 0.22 12.2 0.5 1 23 180 203 180 203 0.95 4 17 5.9e-05 0.0054 17.3 1.0 2 23 211 233 210 233 0.96 5 17 9.1 8.3e+02 1.0 0.1 3 10 241 248 239 253 0.84 6 17 0.049 4.5 8.2 5.7 1 22 269 290 269 290 0.94 7 17 0.00017 0.015 15.9 0.8 2 23 299 320 298 320 0.96 8 17 1.9e-05 0.0018 18.9 3.6 1 23 326 348 326 348 0.99 9 17 0.00018 0.016 15.9 1.7 2 23 508 529 507 529 0.96 10 17 1.5e-06 0.00014 22.3 1.4 1 23 535 557 535 557 0.96 11 17 0.17 16 6.4 3.5 1 23 564 587 564 587 0.92 12 17 4.4e-07 4e-05 24.1 1.0 1 23 593 615 593 615 0.98 13 17 0.092 8.3 7.3 3.8 2 20 621 639 620 643 0.82 14 17 0.00011 0.0099 16.5 3.1 1 23 650 672 650 672 0.95 15 17 2.1e-07 1.9e-05 25.1 0.9 1 23 676 698 676 698 0.99 16 17 0.028 2.5 8.9 1.1 1 23 704 726 704 726 0.94 17 17 4.3e-06 0.00039 20.9 0.6 1 23 732 754 732 754 0.99
Sequence Information
- Coding Sequence
- ATGACGCGAACGAGCCGAGAAAAAGAACGAAGAGAGAGTCGTCGATCGACGATCGAACGAACGAAAGATGTACCAATTGTGAAGATTGACTGTTCATCGGAGGAAGAAGATATCGTTGCTCGTTCATTGACAGAACAAACAGAGAAGATAACCGAGAACAATCCTCTTACTGACAATTTCACGATTTCGAATAAGACAATAATAACCGAAACGAAGATGGAACATTGTTCGGACGACGATATCGATATTTACCCTTCGGAATCGAAATTTCGTGATACCGATTCACCGATCGAGATTAAAGTTCAATTGCCAAATGTATCACCGATTGATAACGATAACGAAGAATCGTCGCGATCGGTCGAAAGTCGTTCCCTTCAGTGTCCAATTTGCGAGGAAACATTTGAGACTGCTAAAAACGCTGAGACACACTTGCGCAAGATTCATCAACGTTCCTATCGTTGCCGTTTATGTCGCGCCTCTTATACGACACAACGGGCTCTCGAAAAGCACATAAACGTTCACGAAAGTGACATATACTTCGAATGTTCGCTATGCCAAACGCAGTTCAAAAGTTTGCCCGGTCTCAAGCAACATCGCGTGCGTGCTCACTCGACCGGTGAGCCCAATCTCGAGTGTGATCATTGCGGCAAACGTTACAGGCTCAAAATCGATCTCGTTCTTCATATGAAGCGCGAACACTTATCGCAAACACGCATTGATTGTCGTTATTGCGGAAAAATCGTGAAAGCTCTAAGCAAACACGAGTGGCGTCATCGCTTTAGTTTGAAAAACGATAAGTTTGATTTTCCGTGCAAAgtatgttcgaaaaaatttcacaCCGAGCACAAACTCGCTAATCACAAATGCACGATCCGCAAAAACGTTGGCACGTTGTCGTGTCCAGTTTGCCAAAAAATCTTTGCTTCAAAGAATCATTATTACGAGCACGTATTAACGCACTCTGGCGCAAGAATGTACAAGTGTGAAATTTGCGGCTATACGTTTCTTCACCGTTCGAGCCTTGTCAAACATCGGAAAACACATCCGGGACCTTTGCCACCGATCGTCGGACTCCCACCGATCGCCGATCTCGCGAGGGAATTTTTAACTAAACATCGCCGAGAgtACAATCCGCTAGATCCACTAGGGGCAACATTTCTGACGGTAAAGTTAGGCAACGATTACTTTCGTATGCCAAAGTCCTTGAGCTTGTTCATGATGAAGCAACAAACATCGTCAAACGAGTCCGCGAAAACCGATGATGTCAAGATGGAAGATAATTCCGATGACACCGTGGAAACCGAGGAACCCAAGAAAATCGtggaaacagtgaaaaaaacaaGTTCGCGAAAGAAACGTCGTGCCAAAAGGAAGAAACACGAGACGAGCGCGATCGTTGAAAGTTTAAGCGTTGATAACAACGATGACGCACGTGATTACGACGAATTTGACGATCTTGACGACATACCGTTGGACTATAGGCAGAAAAAAGCGAAATATGGCAATTCAAAGAAGTTATTGAATTGCAAAATGTGCTATTTGATATTCGATCGAAAGAGCAAACTCACGAGTCACATGTTGAAGCACAGTAATTCGAGACCTCACATATGTACGATTTGCACTAAGGGCTTCAAAACAAGCGCTTATCTGACGAGACACATGGAGGTGCACGACGAAACGGTGCAGGAACACGCGTGTAATTTGTGCGATTTTAAAGCTCGGACAAAGCCGTATTTGAAGATACATCACATTAGAAAACACACCGAGGATTATAACTTCAAGTGCGAAGAGTGCGGCAAACGTTTCAAGGTACAGTCCGATTGGACAACACACATGAAGGATCACGATACCGAATCTTGCGTTTGTGATATATGCGGCGCGTCGTACTCGAGCAAAAGTTCATTATACTTTCACAAACATTACAAACACAAGATAAAGGTCAAGGAGTACGAGTGTGTTACGTGTAAGAAACACTTCAAGAGCCAGAAAAATCTTAATACACACGCGGAGCTGCACAAGATGAAGTACGTTTGCGAACAGTGCGGTATGGAATTCAAGTCGAAGTACGGTCTTACGAAACATTTGCGCACGCATTCGGGCGAAAAATCTTATTTGTGCGCTATATGCGGCAAAACTTTTGGCTGTTTGAGCTCGCAAAAGATTCATTTACTAACGCACGTCGGCGAACGTCCGTATGTCTGTGACATTTGCGGCCAGAGCTTCACTCAGAGATCGCCGATGATGCTTCATCGAAGAAAACATCCGGGCATTAATCCACCACCGCCGCCGATCAAAATTACGAATCTTCTTCACGGTGTTCAGGACAAAATAATAGTCAACAAGAGCGCGAAAAAGGGCGATCCGAAGGACGTGTGA
- Protein Sequence
- MTRTSREKERRESRRSTIERTKDVPIVKIDCSSEEEDIVARSLTEQTEKITENNPLTDNFTISNKTIITETKMEHCSDDDIDIYPSESKFRDTDSPIEIKVQLPNVSPIDNDNEESSRSVESRSLQCPICEETFETAKNAETHLRKIHQRSYRCRLCRASYTTQRALEKHINVHESDIYFECSLCQTQFKSLPGLKQHRVRAHSTGEPNLECDHCGKRYRLKIDLVLHMKREHLSQTRIDCRYCGKIVKALSKHEWRHRFSLKNDKFDFPCKVCSKKFHTEHKLANHKCTIRKNVGTLSCPVCQKIFASKNHYYEHVLTHSGARMYKCEICGYTFLHRSSLVKHRKTHPGPLPPIVGLPPIADLAREFLTKHRREYNPLDPLGATFLTVKLGNDYFRMPKSLSLFMMKQQTSSNESAKTDDVKMEDNSDDTVETEEPKKIVETVKKTSSRKKRRAKRKKHETSAIVESLSVDNNDDARDYDEFDDLDDIPLDYRQKKAKYGNSKKLLNCKMCYLIFDRKSKLTSHMLKHSNSRPHICTICTKGFKTSAYLTRHMEVHDETVQEHACNLCDFKARTKPYLKIHHIRKHTEDYNFKCEECGKRFKVQSDWTTHMKDHDTESCVCDICGASYSSKSSLYFHKHYKHKIKVKEYECVTCKKHFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGINPPPPPIKITNLLHGVQDKIIVNKSAKKGDPKDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -