Oarm000108.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxytorus armatus
Gene Symbol
ECU06_1150
Assembly
GCA_958009045.1
Location
OY253744.1:1193011-1197337[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 8.9e-05 0.008 16.8 0.4 2 20 16 34 15 36 0.94
2 25 0.00092 0.083 13.6 2.1 1 23 72 95 72 95 0.94
3 25 5.7e-05 0.0051 17.4 1.6 1 23 125 147 125 147 0.98
4 25 1.4e-05 0.0013 19.3 1.6 1 23 153 176 153 176 0.97
5 25 1.1e-05 0.00096 19.7 0.6 1 23 182 204 182 204 0.98
6 25 3.6e-07 3.2e-05 24.3 0.6 1 23 210 232 210 232 0.98
7 25 0.00018 0.016 15.8 0.5 1 23 238 260 238 260 0.98
8 25 5.8e-06 0.00053 20.5 0.6 1 23 266 288 266 288 0.98
9 25 0.00025 0.022 15.4 0.3 2 23 295 318 294 318 0.90
10 25 0.00011 0.01 16.5 0.1 3 23 360 381 358 381 0.96
11 25 3.6 3.3e+02 2.3 0.2 3 14 388 399 386 409 0.78
12 25 1.6 1.4e+02 3.4 0.1 1 10 496 505 496 519 0.85
13 25 7.6e-06 0.00069 20.1 0.5 1 23 551 574 551 574 0.95
14 25 7.9e-05 0.0071 17.0 3.5 1 23 580 602 580 602 0.97
15 25 6.4e-05 0.0058 17.2 3.8 1 23 609 631 609 631 0.98
16 25 2.7e-05 0.0024 18.4 1.8 1 23 637 659 637 659 0.98
17 25 1.4e-05 0.0013 19.3 0.6 1 23 665 687 665 687 0.98
18 25 0.0046 0.41 11.4 3.2 1 23 693 715 693 716 0.94
19 25 5.7e-06 0.00052 20.5 1.0 1 23 823 845 823 845 0.99
20 25 0.0033 0.3 11.8 6.2 1 23 851 874 851 874 0.96
21 25 9.9e-05 0.009 16.6 1.1 1 23 880 903 880 903 0.97
22 25 4.5e-06 0.00041 20.9 0.6 1 23 909 931 909 931 0.97
23 25 0.0014 0.13 13.0 0.6 1 23 937 959 937 959 0.97
24 25 2.8e-05 0.0025 18.4 4.8 1 23 965 987 965 987 0.98
25 25 0.0018 0.16 12.7 1.3 1 23 993 1016 993 1016 0.90

Sequence Information

Coding Sequence
atgaaaaataacgaagaacgaaagataataacgaaaaatgtattatcgtgCGACAAGTGTTCAAGAGTATTCAAGAGACAAACGACTTTGGAGAGACATCTTGTGAATTGTtctgagaaaaagaagaaaaatgttgccGAAGAAACAACTTTGGATAAAGAGGATTTGTTTGAGGAGCGAGAAAATTCTCCGAGCAGATTACAGCTACGAAATTATCGTTGCGCGTACTGCGATTATACAACGAGACGGAAGAAACTTTTGAATCTTCACACGAGCGAGTATCACGATATTTCGATAACGAGCAAAAAACAACGTAACATCGACAAAGACGTTGCGGCAGGAGCAAGAATGGAGGCAAACGGTCGTGTCTATTATCACTGCAAGGATTGTGGAAAAAATCTCTTTTCGCCTTACACATTCGCGTGGCACATGAGAATTCACACGGGCGAAAGACCGTTCACTTGTCACTTGTGCGGCAAGCAATTTCGCGTTAATCAGGGTCTCGCTCGTCATTTGCGCGAGACTCACGCGGGTATAAAGAAATTTCCTTGCGACATTTGCTCGCGTATGTTCTCGACGAAACGCAACGTTGAGGATCATCGGCGTATACACACCGGCGAGCGCCCGTTCGTTTGTAACGTTTGTGGCAAAGCTTTCAAGCAAAAAGCTTCGTTATTCGTTCACAATCGTACGCACACGGATTATTTTCCGTTCAAATGCAGCTACTGCAATCAGGGCTTTCGCACTAGGCCACCTCTCGTCGTACATATTACCAAACACACCGGCGAAAAACCTTACAATTGTGACATTTGCGATCGTGCTTTTCGCATTAAGTACGAACTGAAGCGTCATCGTCTCGTACATTCGGATGAGAAACCCTGGCAGTGTGCCGACTGCGGTCTTGGATTTCGCCAGAAACGATATTTGGTCAATCACAAAAGAATTAATTCGCATGGTTGTGCGAAAATTTCGACAGACCCGTCGCAGAaacaatactatgaaaaaacgAGCTCGATGAATGTCCATGAAGACTACGAGCACGTTCTGATTCACGAGGATGATGTGAAACATTTATTTTGCGATAACTGCGATCGCCGTTTTCCTTTAATTTCCGATCTCATCGATCACATGAGAACCGTTCACGACGATGGTGTACATCTGTGCCAATACTGTGAGATCGTTTTTCGTGGTCCCGAAGAGACTTTTCGTCAACACGTTTTGAATCACGAATTCGACGATGATATAACGAGCAATAACGACGTTAATGTTGAAAATTCGTCGAACGAACATAACGAGACCGAGCTCGAGGAAAATTCGTCAAAATATGAAGAGGAGACTCCGAAGGAGACGAAACTCGTTGACAGAGCGTTTATCGGTTATGGTCGCGACGGTGTCGAGTATCATTGTCAAATTTGCGAATTAGTCCTGCCATTATCGAGAATTGATTTTCTTCAGCACGTTCGTTGTCACTCGGAGTACGGTAAATACCGATGCGATTTGTGCAAAGAGACTTTTTTGATGGGATACTTGCTGCTTGAACACAAAGTAGAGGTTCATCgttcaaaaagaaaaagcgGTCGATCCAAGAATAATTTACTCGCCACGGGAACGGCGGAGAATTGTCCACTTAAGCACACGAACGAACGTTCGTACATGTGCGAATTTTGCGGTAAAACATATCCCTCGATATCGAATCTTCGTACGCACCAAAAAGACATTCACGCTGGTTTAAAATTGCACATGTGCGATTTGTGCGAGCGTAATTTTACAACGAAATCGAGCCTCGACAATCATCGACGTTCTCATACCAAACTTTCCAATCCTTACGCCTGCGAATACTGTAACAAGAAATTTCGTACCTCGAACTCGATGCACATCCATCGACGTATTCACGAAAATCACAATCCTTACGTTTGCACGAAATGCGATAAGAGATTTTCCACGAAGCAACGTTTGTCCGAGCATCTCGTTACTCAtgagaaaaatgtatcgtttgtTTGCGAAACTTGTGGCAAAAGTTTTGGTGCTAAACGTAATTTTCTCCGACACCTTCGCGGACACAATATCGACGAAACTTTTGTTTGTCAGTTTTGCCCGTCGAAGTTTCGACAGAAGAGATATTTGAGGGTGCACACGGTGATTCATCATCCCGACGAGTCAAACGAGGCAACAACTACATTGAAAGAATCTATCAAAAAACTCTCGACGAATCTTGGCTCTACGACGAGCGAGATTAAAACGAGCGACAAACCCGAACGAGTCTGTACAATTGTGAAtaacgaggaaaagaaaaacgcTAGTTCGAGCTCTCGTACACTCaatcgagaaagaagaaaaacgttgtttcaGGATTCCAAAGTTCCGAAAGCACCGCAGTCTCCGTTGAAGAAAAATACGAGAGAATGTAGACTTTCGAAAGAAAGTTCAACATgtataaaaaagaacaaacgaaTATCCGAAGATCCGTACGTCTGTGATTTGTGCGGCAAGAAATTTCTTCGTCAGGATAGTTTGAAGTCTCATTTGCGAAGTCACACtggagaaaaacattttacgTGTCACATATGTGGCAAACAATTTGCTCAGACGGGTTGTCTGTATTATCACCTAAAACACGTACACGGTGGTGTGAAAAATCATTCTTGCGACATATGTGGAAGATCGTTCGCGATGAAAACGACAATGGAGGATCATCGACGTTCGATTCATACTGGCGAACGTCCGTACGTTTGTGACGCTTGCGGCAAAACATTTACAACAAAATCTTCCCTGTACATACACAGTAAAATTCACACGGGAAGTTATCCATACGAATGCacttattgcaaaaaatcattcatatGGAAACAACAATTGATCGGACATTTGACGATTCATACGggtgaaaaaaatcatacttgCGATATGTGTGACAAAGCTTTCGGCGTTAAAAATCATCTGACCAGGCATAAACGCACTCATGTCACTGAAAAACCTTATACCTGTGAAAAATGCGGTATGAGATTCGGACAAAAGCGGTATCTCGTGAGTCATGACAGATCGAAgcacggataa
Protein Sequence
MKNNEERKIITKNVLSCDKCSRVFKRQTTLERHLVNCSEKKKKNVAEETTLDKEDLFEERENSPSRLQLRNYRCAYCDYTTRRKKLLNLHTSEYHDISITSKKQRNIDKDVAAGARMEANGRVYYHCKDCGKNLFSPYTFAWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICSRMFSTKRNVEDHRRIHTGERPFVCNVCGKAFKQKASLFVHNRTHTDYFPFKCSYCNQGFRTRPPLVVHITKHTGEKPYNCDICDRAFRIKYELKRHRLVHSDEKPWQCADCGLGFRQKRYLVNHKRINSHGCAKISTDPSQKQYYEKTSSMNVHEDYEHVLIHEDDVKHLFCDNCDRRFPLISDLIDHMRTVHDDGVHLCQYCEIVFRGPEETFRQHVLNHEFDDDITSNNDVNVENSSNEHNETELEENSSKYEEETPKETKLVDRAFIGYGRDGVEYHCQICELVLPLSRIDFLQHVRCHSEYGKYRCDLCKETFLMGYLLLEHKVEVHRSKRKSGRSKNNLLATGTAENCPLKHTNERSYMCEFCGKTYPSISNLRTHQKDIHAGLKLHMCDLCERNFTTKSSLDNHRRSHTKLSNPYACEYCNKKFRTSNSMHIHRRIHENHNPYVCTKCDKRFSTKQRLSEHLVTHEKNVSFVCETCGKSFGAKRNFLRHLRGHNIDETFVCQFCPSKFRQKRYLRVHTVIHHPDESNEATTTLKESIKKLSTNLGSTTSEIKTSDKPERVCTIVNNEEKKNASSSSRTLNRERRKTLFQDSKVPKAPQSPLKKNTRECRLSKESSTCIKKNKRISEDPYVCDLCGKKFLRQDSLKSHLRSHTGEKHFTCHICGKQFAQTGCLYYHLKHVHGGVKNHSCDICGRSFAMKTTMEDHRRSIHTGERPYVCDACGKTFTTKSSLYIHSKIHTGSYPYECTYCKKSFIWKQQLIGHLTIHTGEKNHTCDMCDKAFGVKNHLTRHKRTHVTEKPYTCEKCGMRFGQKRYLVSHDRSKHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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