Oarm009113.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- lola
- Assembly
- GCA_958009045.1
- Location
- OY253748.1:19769341-19773365[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1 8.9e+03 -3.3 0.1 4 20 102 118 101 119 0.73 2 2 2.7e-08 3e-05 23.9 0.0 9 40 410 442 409 447 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTAAGGTGGAACAATCATCAGAGCACGCTCATTCAAAACTTCGACACACTCCTAGAGAGCGGCACGTTGGTCGACTGCACCCTGGCGGCGGAGGGGAAGTACCTAAAGGCCCACAAAGTCGTCCTCTCCGCGTGCAGTCCGTACTTTGAGgGCCTCCTCAGCGAACACTATGACAAGCACCCCGTCTTTATATTAAAGGACGTTAAGTTTAAAGAACTGAAGGCCATGATGGACTACATGTACAGGGGAGAAGTGAATATCTCCCAAGACCAATTGGCAGCACTCCTAAAAGCCGCCGAGTCGTTGCAAATAAAGGGTCTCTCGGAGAGCAAAACGGGAGGTAATAACGGCAGCAAAACAGAATCATCGAGGCAACAACAAAAAGTCGTAACACAGCCTACGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAATAAAGTTCCTAGACAGAGTATGGCACAGAGCTCGGTTGGTGATCTACCGGAAGACTCGGCCAGTCCTCAACTACCTAAGGGGCTCTCTTCCAGGGAAGGCTCGCAAAGTCCGACctcgagaaaaagaaagagattcAGAAGAAGAAGCGTCGGCGACGACAATTCAATTGAAAATCACGATGCGTCAAACTCGAGCGACATGCCACAACAAATGAGCGTACCGTCACTCGGTATCGCTACGACTGCTGACGAAAAGACTCACCCCGATGAAACTGATCCACTCGGCAGATCGGCACTTATGCAACAGCTGACCAAACCCGCCGAAGTGATGTTACAGtTGCCACACGAAAAGCCTGAGCCTACCGAAAGCTTGATCGAGCCAAAGTCCGAGTACCTGGAGGATAACGAGGAGAGCGTCGAAGATTTGACGCTCGACGATGATATGAACGACCTCAATGAAATGGAACAAGACAACAACAGAGCCGGCCCGTCCCACGATCCCTCCCAACATCCTGGTGGGGGGTCGATCTCGCGGTATCGCGGTACGAGAACCGTCAATACGATTGCCACCGCTGGTACGTTTGTCGGTGGCGATGCACGATGGGCATCTCATTTCCTCGATTATCATAAAAAAACGACAAACACGAGACAGCGTACGCGTCCGGACGTTGACGTTGGCGCGTTGCTCAAATCATTGGCCAACAAGCAGGGACGAAAGTATAGCTTAGACTCGGTTAAAATGTCATTGGATGCGATATTACAACAGGGCGTTAGTACGACACACGCGTCCGAGATGTACGGTATTAATCGTTCGACGCTGCAGTTTTATCTGAAAAAATTGAACGTCGTGAGACGACGATGGAGACAACCGACCACGCTTGTACCTCACAGACAGTCTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGNNGSKTESSRQQQKVVTQPTAPSLDIPHASSGLTIEKNNKVPRQSMAQSSVGDLPEDSASPQLPKGLSSREGSQSPTSRKRKRFRRRSVGDDNSIENHDASNSSDMPQQMSVPSLGIATTADEKTHPDETDPLGRSALMQQLTKPAEVMLQLPHEKPEPTESLIEPKSEYLEDNEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGSISRYRGTRTVNTIATAGTFVGGDARWASHFLDYHKKTTNTRQRTRPDVDVGALLKSLANKQGRKYSLDSVKMSLDAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPTTLVPHRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266562;
- 90% Identity
- iTF_01056161;
- 80% Identity
- iTF_01129435;