Opom029666.2
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- nfxl1
- Assembly
- GCA_963921995.1
- Location
- OY998169.1:97132083-97160969[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3 4.4e+04 -7.9 5.6 15 19 171 175 170 175 0.81 2 18 0.21 3.1e+03 -0.4 0.4 4 10 206 212 205 212 0.95 3 18 4.8e-08 0.00071 20.8 17.0 1 19 220 237 220 237 0.99 4 18 1.6e-08 0.00024 22.3 16.9 1 19 273 291 273 291 0.98 5 18 0.39 5.8e+03 -1.3 0.6 6 10 316 320 315 322 0.90 6 18 1.4e-06 0.021 16.1 12.4 3 19 328 344 320 344 0.86 7 18 1.7 2.5e+04 -3.3 1.4 5 10 368 373 368 373 0.93 8 18 2.1e-06 0.031 15.6 10.9 1 18 379 396 379 397 0.97 9 18 1.5 2.1e+04 -3.1 2.3 1 5 406 410 406 416 0.89 10 18 1.5e-05 0.22 12.8 15.3 1 18 431 448 431 449 0.94 11 18 3.1e-09 4.5e-05 24.6 11.3 1 19 458 476 458 476 0.98 12 18 0.026 3.8e+02 2.5 5.1 9 19 524 534 522 534 0.89 13 18 0.068 1e+03 1.1 6.5 3 12 545 554 544 554 0.90 14 18 3 4.4e+04 -4.9 3.2 15 18 583 586 580 587 0.74 15 18 0.015 2.2e+02 3.2 3.2 1 11 623 633 623 637 0.94 16 18 0.7 1e+04 -2.1 1.2 5 10 650 655 650 655 0.92 17 18 3.1e-05 0.46 11.8 17.5 3 19 664 680 663 680 0.92 18 18 2.2e-06 0.033 15.5 12.8 1 18 723 742 723 743 0.89
Sequence Information
- Coding Sequence
- ATGAGTACCAACAAATCCAAACCTAATCCATGGAACAAAAATTCGCAGCCTCAAAAAGGACAAAAACCACAAAACTTACAGAAAAATGCTGtaattttaaatggaaactcTATGGCTGAAAACAAATTTAGAGAGGCTCATCAGAAGCTTCAAGAAGCTGTAAAGAAACATATTAAGGATTATGAGTCAAGTTCAGATGAAGAAGATCTAGATTCTGTTAATTTAATAGATGGGATCCTAAAAAACTACACTCAAACTGGAGGTTCGGCAAAAGATGCTACAGTATCCAAGACACAAGCATTTATTCAAGAAGCTTTTCAGTCTGGAGCAAATACCTGTTTGATTTGTATTTCACGTGTTAAAAGGGATAATGAGgtTTGGAGTTGCAAAAACTGCTTTGGACTTTTTCATTTAATGTGCATACAAAGATGGTCCAAGGACACTCTAACTCAACAAAAACAGTCATTAGAAGATGGCATACAAACACTGAAGAAAGAACTGACTTGGTGCTGCCCCAAATGTCGTTCGGAGTACTTCCCTAGAGATATTCCCTCAAAATATCTTTGCTTTTGTAAAAAAGTTGAAAACCCTAAATACGATCCGTTTTTGGTTCCTCACTCTTGTGGCGAAATTTGTAAGAAAGATCTAGTGCCAGCGTGTGGACataaatgtttacttttatGTCATCCAGgaCCTTGTCCACCATGTCCTGTAACAGTGAATGCTACATGTTATTGTGGCTCCAGCTCGTCGGTTACAAGACGATGTAGTCACCGAGGGTGGTCTTGTGGTAACCGATGCGGAAGAAGTTTGTCCTGTGGAAAACATTCTTGTTCAgaaccgTGTCACCCTGGTGAATGTGAACCATGTTctaaaaaaagcattcaaaaatgCATGTGCGGATCACAACAAAAACTGCGGAATTGCGCTGAACCTATCTGGCAATGTGAAAAGGTCTGTGGTAAATCTCTTGACTGTAAAAAACACAAATGTCAAGAAATATGCCACGCGGGGGTGTGTAACACCTGCCCGCTCACTTTACCGAGGACATGTCCGTGtggaaaagaaaaatatcaactACCATGTACCGAGGAAATACCGACTTGCAAAGATACTTGTGAAAAATTGTTAGAATGCGGAATGCATCCGTGCAATCAGAGATGTCATTATGGCAGTTGCGGATTGtgtttGGAAACAGTAACAAAATTCTGCCGATGTGGTCAACACTCCAAGGAAATACAGTGTTGCAAGGAGTACCTGTGTGACACAAAGTGCAAAAATATGAGAGATTGTAATAAACATGCTTGTAATAGAAAAtgCTGTGATGGTAATTGTCCTCCGTGCGAAAAACCCTGCGGTCGCACCCTTCAGTGCGGCACTCACAAATGTTCGTCTGTGTGTCACCGAGGTTTATGCTATCCATGTCAAGAGAAAAACACAGTTACCTGCCGCTGCGGCGCTACTAAGTTACAAGTGCCCTGCGGACGAAAGAACAGAACTAAGCCACCAAAGTGTTTGAAACCATGTTTGATACCTCCCGACTGCCACCACAAACAAAGACTGAGCCACAAATGTCATTTCAACGACTGTCCTCCTTGCAAGCAGATCTGTGACAAACCAAGATCGACCTGTCAACATCCATGTCCGGCCACTTGTCATTCAGCCGTGCTGGTCAAAGTAACAACTCAAAAAGCGAGTATGCCTTGGGAACAGTCCGGTCCGCAGGTGGAACGGAAGTGTTTGAGTTGTCCTGAGTGTTTGGTACCTGTTATGGTGTCATGTTTAGGAGATCATGAAACAGTGGCATGGCCTTGCCATTTAGCCAAACCATATTGTTGTGGCAGAGCTTGTGGACGAATTTTAGACTGCTCCAACCATTTTTGTACTTTGCAGTGTCATGTCGTGGAAGGTGCTTctgataaaataaagGCTGGTTCGAACTGCGAAAAATGTGAGAACCCCTGTTTCAAACCTCGTCCAGATGGTTGCACCCACGACTGTCCCAAATCATGTCATCCAGGAGAGTGTCCCCCTTGTAAACAAATGCTCAGAATAAGGTGTCATTGTGGACTTAATCAACCCTATGTTAAATGCAGCGATTGGTTACATTTGGAGAAACGGGAGGAGTTACAGAGTTGTGCAAATCAGTGTccaaaaaatTATGCTTGCGGTCATCGCTGCAAAAGTAACTGCCATTCTGGCGATTGCCCCAACCCAGAGTCCTgcaaaaagaaagtaaaaatcaCGTGCGAATGCAAAAGAATTAAAAAGGAATTTTCCTGCGAAACTGTGCGCAAAAATCAAGCCAAAATTGAATGTGACGCAGTTTGTGCTAGAAAATTAGAAGAAGAAAATGTTAAGAAGCAAAAACTGGATGAAATTAGaaagaaagaagaagaaattaAGAATGCAAAGGAGGGTGGCAGATTCCTTCACCTTTGGATGGCTATATTTATCCACGCTTTTGTGGTCGAAGCCATTAGCTATGTGGCTCCAGACGTGGACAATTTTTGGCATTCCCAAACGCCTCTCATTTTCTTGGGACGAAGACTTCCAATTCATATCCTGGCCCTGTACCACTGCTTTTATTACAACGCTTCTATGGCAGTGGCAAAAGCTAGATTGTCAAGAGTTGCAGAGGCATGCGCAGTGGGCCTGAGCTCAGTCCTGCTTGATATTGTCTATGATATTGTTAGTGTGAGGTaa
- Protein Sequence
- MSTNKSKPNPWNKNSQPQKGQKPQNLQKNAVILNGNSMAENKFREAHQKLQEAVKKHIKDYESSSDEEDLDSVNLIDGILKNYTQTGGSAKDATVSKTQAFIQEAFQSGANTCLICISRVKRDNEVWSCKNCFGLFHLMCIQRWSKDTLTQQKQSLEDGIQTLKKELTWCCPKCRSEYFPRDIPSKYLCFCKKVENPKYDPFLVPHSCGEICKKDLVPACGHKCLLLCHPGPCPPCPVTVNATCYCGSSSSVTRRCSHRGWSCGNRCGRSLSCGKHSCSEPCHPGECEPCSKKSIQKCMCGSQQKLRNCAEPIWQCEKVCGKSLDCKKHKCQEICHAGVCNTCPLTLPRTCPCGKEKYQLPCTEEIPTCKDTCEKLLECGMHPCNQRCHYGSCGLCLETVTKFCRCGQHSKEIQCCKEYLCDTKCKNMRDCNKHACNRKCCDGNCPPCEKPCGRTLQCGTHKCSSVCHRGLCYPCQEKNTVTCRCGATKLQVPCGRKNRTKPPKCLKPCLIPPDCHHKQRLSHKCHFNDCPPCKQICDKPRSTCQHPCPATCHSAVLVKVTTQKASMPWEQSGPQVERKCLSCPECLVPVMVSCLGDHETVAWPCHLAKPYCCGRACGRILDCSNHFCTLQCHVVEGASDKIKAGSNCEKCENPCFKPRPDGCTHDCPKSCHPGECPPCKQMLRIRCHCGLNQPYVKCSDWLHLEKREELQSCANQCPKNYACGHRCKSNCHSGDCPNPESCKKKVKITCECKRIKKEFSCETVRKNQAKIECDAVCARKLEEENVKKQKLDEIRKKEEEIKNAKEGGRFLHLWMAIFIHAFVVEAISYVAPDVDNFWHSQTPLIFLGRRLPIHILALYHCFYYNASMAVAKARLSRVAEACAVGLSSVLLDIVYDIVSVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -