Opom017704.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- stc
- Assembly
- GCA_963921995.1
- Location
- OY998166.1:81993504-82038732[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3 4.4e+04 -4.7 3.3 6 7 237 238 233 241 0.51 2 16 3 4.4e+04 -4.1 0.4 4 10 267 273 267 273 0.82 3 16 4.4e-06 0.065 14.5 12.3 3 18 281 296 277 297 0.93 4 16 2.6 3.9e+04 -3.9 1.2 6 10 323 327 323 327 0.96 5 16 6.5e-08 0.00096 20.4 11.5 1 19 333 351 333 351 0.98 6 16 0.75 1.1e+04 -2.2 0.9 5 10 380 385 380 385 0.91 7 16 2.5e-09 3.7e-05 24.9 16.3 1 19 391 409 391 409 0.97 8 16 6.8e-06 0.1 13.9 14.8 4 19 456 471 449 471 0.87 9 16 1.8 2.6e+04 -3.4 2.0 5 10 500 505 500 505 0.93 10 16 0.006 88 4.5 9.3 1 11 511 521 511 522 0.96 11 16 1.9 2.9e+04 -3.5 0.8 4 10 526 532 525 532 0.69 12 16 7.2e-10 1.1e-05 26.6 12.3 1 18 538 555 538 556 0.97 13 16 0.61 9e+03 -1.9 1.5 5 10 584 589 584 589 0.96 14 16 0.0044 65 4.9 15.3 1 18 595 611 595 612 0.87 15 16 2.3e-07 0.0035 18.6 16.1 1 18 648 666 648 670 0.96 16 16 0.0058 85 4.6 15.1 1 18 677 695 677 696 0.91
Sequence Information
- Coding Sequence
- ATGCTACAAATCAAACAGGAACTTTTGAGGAACCCACTAGCAGTCAATCTGTCCAAAATTCTAGAAAAAGTACCAAAGAAAGAAATGAATTTCATTCTAAGGCTTACAGCAAAAATCGATGTGAAAACCGAGGCAATTTGGGCCAAGATAGTAAAAATACTGGAACTAATAGTgAATAATTTCGATTATGACACATTTCCTTCTAGTATGAGATACCAAGGAAGTAACTCAAAAAGTAATAGATCGAAAAGTAATTATTTCGGAGGAAGTTCGAGTCGAAGTTTTCATGataatttgtataaaaatagaGATGATAACAGTAGGGATGATACTTCATATAAAAGTAGGGATAATTCTAGAGAGAGCTCCAGAGAAAAGGCCGATGATTGTTATGGTTATGATAATAGTTATTCCGGAAGTAGTTTGTCAAATTATAAGGGCAGTAGAGGAAAAACTTTGGGAAACTGGCGGAGCAAGCCAAAGTATGCTAGCGAGAAGAATGAAAGGAAGACAATGGCTGCTGGTCAGCGGGAACGTCTTATAGACATGATAGACCGTCGCACCTTGGAATGCTTGGTCTGTTGCGAGAAAATCAAAACCAACGATAAAGTCTGGTCCTGTATGCAATGCTATCATATTATGCATCTGAATTGCATATCCGCTTGGGCTAAATCGTCAAAAGTTGAAGAAATCTGGCGTTGTCCGGCTTGTCAAAATACCTGCTCCGAACTTCCGAGGCAATACGTATGCTACTGCGGTAAAGTGACAGATCCCAAATTCGATCCGAATGTTATTGCGCACGGTTGTGGCGAAATGTGCCTTAGAAAGGGTAGGAATTGCGAGCACAAGTGCACCATATTGTGTCATCCTGGGCCTTGCCCTGATTGTAACATTATGgTTTCCAAACCGTGCGGTTGCGGCAAAACATCCCAAACTGTCAAGTGTTCCACCGAGCTGGAAATTGTCTGCGAAGCCGTTTGTAGTAAGTTACTAGAGTGTGGCATTCATGAATGCACCGAAAAATGTCACGTCGGTACTTGTTCCTCTTGCAGAGAAATCATTATTCAGGAATGTTATTGTGGGAAGACAGGAAGGAAGgtgcCTTGTACGTCAGAATATTCTGGACTGACCGAATTTCGCTGTGAAAATCCCTGCCAAAAGCTTCTGTCTTGTGGCAACCACAAATGCGAGAAACAGTGTCATTCGGGAGATTGCGGTCCTTGTACCAGAGACATCAGTGTCATAAATTCCTGTTATTGTGGGAAAATGTCTttgaaagaagaaagaacttCCTGTTTAGATCCTATTCCTTGCTGTGATAAGATCTGTGGTAAAATCCTACCTTGCGGCCAACCAAGCAAACCCCATAGCTGCCAAGACAAATGTCACGAGGGCAAATGTCCGGCATGCCCTCTGACGACCGTGGTCCGATGCCGTTGCGGACACATGGACAAAGAGATGGCATGTCAAAAATTGACAACCAAGGCCGACGACGCCAGGTGCGAGAAGAAGTGCAATAAGAAACGGCTTTGCGGCAAACACAAGTGCAACCAACGTTGCTGCATTGAAATCGAACACTTCTGTCCTCTGCCATGCAACCATTTCTTGTCGTGCGGGCTGCACAGATGCGACCGCACCTGTCATTCCGGGCGTTGTCCGCCATGTTTGGAAAGCAGTTTCGAGGAATTACACTGCGAATGTGGAGCTAGTGTCCTTTATCCACCAGTGCCTTGTGGAACAAAACCGCCAACATGTAAGGAACTATGTTCGAGAACGAGACCGTGTGGACATCCGCCAAATCATGAATGCCATAGCGGACCCTGCCCgccttgttttgttttgaccAAAAGATGGTGCTACGGTCATCACGAACAGCGCGCGGCCATTCCCTGCCACCAAGAAAACTTCAGTTGCGGCTTGCCTTGCGGCAGGGCGATGCCCTGCGGCAGACACAAGTGCGCCAAGCCTTGCCATGAGGGGGAGTGTGCGCTGCCTTGCGCTCAGCCTTGCACAGTGCCTAGAATTTTGTGTGGCCATCCGTGCGGAAAGCCCTGTCACGACGCGCCTTGTCCAGATAGCAATTGCAAGCAAATGGTGCCAATAAGTTGTCCGTGTGGTCTCATGAAAGGGAGCAAACCTTGCACCGAAGTTGCCGACGAATTTAGGAACATCGAAATGGCCCAGCTGAAGGAGAAAATGGAAACAATGTCCGCATCGGATCAAGCAGTTGACATTTCCGATATCGTTACCAAACCTAAGAGGCCTGCAGTACTCAAAATacTTGAATGTAGTGACGATTGCAAAACGCTGGAACGAAACCGTAGACTGGCAATAGGACTTCAAATTCGTAATCCTGATTTAAGTCAAAAACTAACACCAAGATATTCCGATTTTATGAAACAATGGGGAAAAAAAGATCcacatttttgtcaaaaagtgCATGATAAATTGACCGAGTTGGTTCAGTTGGCAAAACAGAGCAAACAAAAGAGTAGATCTTATTCGTTCGAGTCCATGAATAGAGACAAACGTCATTTAATTCACGAGTATGTCGAACATTTTGGGTGCGACAGCGCTGCATACGATCAGGAACCAAACAGAAATGTCGTAGCCACGGCTATAAAGGATAAATCTTGGCTGCCCAGTTTTAGTTTATTGGAAGTTATACAAAGAGAGAACGGTCAAAGAAAAGTTCCAGGCCCGATTTTAGCCAGTAGCTCGTCTACGAAGTCTGAGACTGTCTCTTTAAAAGTCACTAATAGAGCCCAAAAGCCTGCTGCGGAAAAAGTAGAGGAAAGTCTGTTTAAAAATCCGTGGTCGGTTAAAGCTGCTCCGGATAATGAAGAAAATGACAGATATTTCAGTAATCCGTGA
- Protein Sequence
- MLQIKQELLRNPLAVNLSKILEKVPKKEMNFILRLTAKIDVKTEAIWAKIVKILELIVNNFDYDTFPSSMRYQGSNSKSNRSKSNYFGGSSSRSFHDNLYKNRDDNSRDDTSYKSRDNSRESSREKADDCYGYDNSYSGSSLSNYKGSRGKTLGNWRSKPKYASEKNERKTMAAGQRERLIDMIDRRTLECLVCCEKIKTNDKVWSCMQCYHIMHLNCISAWAKSSKVEEIWRCPACQNTCSELPRQYVCYCGKVTDPKFDPNVIAHGCGEMCLRKGRNCEHKCTILCHPGPCPDCNIMVSKPCGCGKTSQTVKCSTELEIVCEAVCSKLLECGIHECTEKCHVGTCSSCREIIIQECYCGKTGRKVPCTSEYSGLTEFRCENPCQKLLSCGNHKCEKQCHSGDCGPCTRDISVINSCYCGKMSLKEERTSCLDPIPCCDKICGKILPCGQPSKPHSCQDKCHEGKCPACPLTTVVRCRCGHMDKEMACQKLTTKADDARCEKKCNKKRLCGKHKCNQRCCIEIEHFCPLPCNHFLSCGLHRCDRTCHSGRCPPCLESSFEELHCECGASVLYPPVPCGTKPPTCKELCSRTRPCGHPPNHECHSGPCPPCFVLTKRWCYGHHEQRAAIPCHQENFSCGLPCGRAMPCGRHKCAKPCHEGECALPCAQPCTVPRILCGHPCGKPCHDAPCPDSNCKQMVPISCPCGLMKGSKPCTEVADEFRNIEMAQLKEKMETMSASDQAVDISDIVTKPKRPAVLKILECSDDCKTLERNRRLAIGLQIRNPDLSQKLTPRYSDFMKQWGKKDPHFCQKVHDKLTELVQLAKQSKQKSRSYSFESMNRDKRHLIHEYVEHFGCDSAAYDQEPNRNVVATAIKDKSWLPSFSLLEVIQRENGQRKVPGPILASSSSTKSETVSLKVTNRAQKPAAEKVEESLFKNPWSVKAAPDNEENDRYFSNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -