Opom026336.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxystoma pomonae
Gene Symbol
-
Assembly
GCA_963921995.1
Location
OY998168.1:100243217-100260143[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0075 1.1 11.1 3.2 1 23 165 188 165 188 0.94
2 16 0.0021 0.29 12.9 3.0 1 23 197 219 197 219 0.99
3 16 1.7 2.4e+02 3.7 0.4 2 23 244 265 243 265 0.95
4 16 0.0079 1.1 11.1 0.5 1 23 274 297 274 297 0.92
5 16 0.0047 0.66 11.8 0.7 2 23 311 332 310 332 0.96
6 16 0.14 19 7.2 3.2 2 23 342 363 341 363 0.95
7 16 0.00018 0.025 16.3 0.4 1 23 370 392 370 392 0.92
8 16 0.081 11 7.9 1.5 2 23 403 424 402 424 0.96
9 16 0.017 2.4 10.0 4.3 1 23 429 451 429 451 0.97
10 16 0.041 5.7 8.9 1.5 1 22 460 481 460 484 0.91
11 16 0.0028 0.39 12.5 0.3 3 23 510 530 508 530 0.95
12 16 0.14 19 7.2 4.1 1 23 539 561 539 561 0.99
13 16 0.13 19 7.2 0.6 3 23 569 588 567 588 0.96
14 16 2.4 3.3e+02 3.3 1.7 1 19 613 631 613 632 0.91
15 16 0.13 19 7.2 0.6 3 23 639 658 637 658 0.96
16 16 0.23 32 6.5 0.4 3 23 713 732 711 732 0.95

Sequence Information

Coding Sequence
ATGGCCAGAGAAAATGAGAATAAGGAAAGCTCTATCTTACACGACATATTAGCCTCTGAAGATTCGGAAAGCTTGTGGCTCTCGGCCGCAGGAGAGTCCACTGGGAATCCACAACGCGAATCGGCTGAGGTAAAGGATGAAATGAAACAGGAAGAAGACATCAAGCTTATTGATAACCATAAGCCCGACAAGGGTAGTATAAATGATGATGTAAAGGATGAATTACCCACAAAGCCTGCCAAAGATGATGAAAACGGGGAAGAAGAACAATACAAAACTGTTATTGTTAAAAGTTACAAATCGAGTTCGGCAAAAGAAAAACCAATGGAAAATATCAATACCATATTTGAAGAAAATGAAGTGAATATTGAAAAGAAAACATTCCATCGTCAAATTTTTAATGACATTCTCGAAAATATGGACAAGAAAAAACTGGAAGAACTCCAAACGAAATACGTCGAATATTTACGCGAAGCTGCCGATTTAGAAACGTTTGAATGCCTCAAATGCGACTACCAAACCATTCATAAAGCAAACTTGAAAACTCATTTACATTTGATCCATAAAAAAGAGATTGAAGAGACCTGGTATCGATGTCTGCAATGCCgttataaagtcaaaaatttaaactctcTAAAAAAGCACCAGTTAACGCATGTGGAAAGTAGTGAAGATGAAAAATACAGTGACTTAGACATACCCGATATTGACGATCTGAATCGAATTTGGAACTGTGATTTTTGCACCTTCGAAACCTATGAAAAAGATGCGTTTGAAGAGCACAAATTGACTCATAAAGATCCTAATTATCCCAAGAGGTATTTGTGTTATCTGTGCGATTATGGAGTTGTGCAGAAAAAATCTTTGCAAAGgcatttggtaaaaaatcaccAAGTCGAACTCAAAGgctATCGTCACactgaaaatttgaaatgtcCCAATTGCGATTACAAAACCGACTTAAAATCGTCTTTCAACATCCATCTGATGCAGCACAAGAACCCGGACGAAATCACGTGGCTGACTTGCAAATACTGCGAATTCAAGACGAAACACAAAGCCAGCATAAGAAATCACGTGCTCAACCACGAAAACCCCGAGAAAAAGTTCATGTGCGAGGTGTGCAGCAAGCGGTTCAGAACTAAAGGAGAGTTACAAGGCCACAGTGTAGTGCATAAAGACATAAGTGAACTGAGCGAGGTGCAAAAATGTTCGGAGTGTTCGTTTCAGACCAAATATAAATTGGGCCTCAAGCAGCACATGGAACTGCATCGGGAACCCGAGTTTATCTGCGACATTTGCGGCTTCAAAAGCAGACGCAAGTACAATCACAAAATGCACATGCAGCGGCACAAAGACGAAAAACAGTGCGAAATTTATCGTTGTGCCGTCTGTCCGTATTACACTAAATTCAAACCGCATTTGAAGGCGCACGTGAGCAAAGGCAAACACAAGCCCGCGGATTGGAAACCACGACCCGACACTTACCTCACCAACAAGTTGGGCCCTGTGGCCAAATCGACCATATGCAACGTTTGCGGTCTTCAGCTCTCTTCGAAATCGTCACTGATCACTCATTCGAAACTGCACAAGGATCCGAGCGAAATTCAGATGTACAAGTGCGAAAAGTGCAAGTTCGAAAGCCGGTACAAGGGCAGTTACGATACGCACAAAAAAACGCACGAGCCGCCCGATTTGTTGGCTTGCGAAGTGTGCGGCATGAAAATCAAGAAGAAGAATTACAAAATGCATCTGATGACGCACCAAACGCTCTGGTCGAAATCTTCGCTGATTACTCATTCGAAACTGCACAAGGACCCGAGCGAAATTCAGATGTACAAGTGCGAAAAGTGCAAGTTCGAAAGCCGGTACAAGGGCAGTTACGATACGCACGAGCCGCCCGATTTGTTGGCTTGCGAAGTGTGCGGCATGAAAATCAAGAAGAAGAATTACAAAATGCATCTGATGACGCACCAAACGTTCTGGTCGAAATCTTCGCTGATCACTCATTCGAAACTGCACAAGGACCCGAGCGAAATTCAGATGTACAAGTGCGAAAAGTTCAAGTTCGAAAGCAGGTACAAGGGCAGTTACGATAcgcacaaaaaaacacacgagCCGCCCGATTTGTTGGCTTGCGAAGTATGCGGCGTGAAAATCAAGAAGAAGAATTACAAAATGCATCTGATGACGCACCAAACGGTAAGCGAGACTGAGCTATTCACCTGCAGTTATCAGACGAAATTTCGGACGTATCTTCGGGAGCATTTGAAAAAGATATCGACCATGCTAAAGTATAAAAATGCGGAGTAG
Protein Sequence
MARENENKESSILHDILASEDSESLWLSAAGESTGNPQRESAEVKDEMKQEEDIKLIDNHKPDKGSINDDVKDELPTKPAKDDENGEEEQYKTVIVKSYKSSSAKEKPMENINTIFEENEVNIEKKTFHRQIFNDILENMDKKKLEELQTKYVEYLREAADLETFECLKCDYQTIHKANLKTHLHLIHKKEIEETWYRCLQCRYKVKNLNSLKKHQLTHVESSEDEKYSDLDIPDIDDLNRIWNCDFCTFETYEKDAFEEHKLTHKDPNYPKRYLCYLCDYGVVQKKSLQRHLVKNHQVELKGYRHTENLKCPNCDYKTDLKSSFNIHLMQHKNPDEITWLTCKYCEFKTKHKASIRNHVLNHENPEKKFMCEVCSKRFRTKGELQGHSVVHKDISELSEVQKCSECSFQTKYKLGLKQHMELHREPEFICDICGFKSRRKYNHKMHMQRHKDEKQCEIYRCAVCPYYTKFKPHLKAHVSKGKHKPADWKPRPDTYLTNKLGPVAKSTICNVCGLQLSSKSSLITHSKLHKDPSEIQMYKCEKCKFESRYKGSYDTHKKTHEPPDLLACEVCGMKIKKKNYKMHLMTHQTLWSKSSLITHSKLHKDPSEIQMYKCEKCKFESRYKGSYDTHEPPDLLACEVCGMKIKKKNYKMHLMTHQTFWSKSSLITHSKLHKDPSEIQMYKCEKFKFESRYKGSYDTHKKTHEPPDLLACEVCGVKIKKKNYKMHLMTHQTVSETELFTCSYQTKFRTYLREHLKKISTMLKYKNAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-