Opom026331.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998168.1:100042757-100066144[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.61 85 5.2 1.8 2 23 258 279 257 279 0.84 2 10 0.0012 0.17 13.7 1.5 2 23 288 309 287 309 0.96 3 10 0.0091 1.3 10.9 0.0 2 23 334 355 333 355 0.95 4 10 2 2.8e+02 3.5 7.2 2 23 364 385 363 385 0.94 5 10 0.48 67 5.5 0.2 3 12 413 422 412 424 0.89 6 10 0.28 40 6.2 1.5 2 23 440 461 439 461 0.97 7 10 0.00023 0.032 15.9 1.9 2 23 467 488 467 488 0.97 8 10 4 5.7e+02 2.6 6.9 4 23 501 526 495 526 0.72 9 10 0.013 1.8 10.4 1.9 2 23 532 553 531 554 0.93 10 10 4.7e-06 0.00067 21.2 3.1 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- atgtacACGGCTCATGGAAGGACTCATCCGAATTGGAAAGAAAAAGTTAGAGAAAGACAAAGATCGTTGATGGAGTCGAAACCAAAAAGAGcacTATCAAATAAATTTCGAGACTGGTCCCATTTGGGACATACCAAGATTGCGAGCATTGTCACCAACTCGCTGCTAGAGATGAGGAGTGACATCATGACTCCGAAAATCAACACGAACAAGCCGTTTAAGACCCAGCTATCCTGGGAAAACAAGACGGAGAAATCACTAGTCCAGTCAGGAAAATTGTTATGGTATACCGAAGGATCCAAGATGGACATATATATCCAGTGGATCAGGAGTGGAAATAAACTAAGCATGTCAGATAGTGAAGAAATAATTGAAGATCAGGTAGAACGAAGTGTTGTTAAAAGCGAAACAATTATAGATGAAGACGAAAACGAAATTGAAAGTTTGTCACATTTTCTGGAACCAAGTATTGAAACACCACAAGAAGAACCTCCAGTCAAGATTAAagtaaaaactgaaattttggaaaatacatctctcaaacgaattaaaaaagaaactgaaaaagaacaaaatacaaacgCTACGGATAAAAGGAAAACCAAATTGGGAGCTAAAAAAGCTGCAGtaaaaagaagaaaaggagCAAAAACAGAGATAGCTGGAAGTGAGGAAACTTCGattcataaaataaaacaagaagaaTATAGTGATTTTGATAAGGAAACATATAATGAAGATGAAGAGCACGTCACTGCAAATTCTGCGATAAAATGCATGTATTGTGACGAAATGTTCGTAAACAGAGCCGATTGTGATCTGCACCACACAGTTCACACGTTCGATAATACGGTTGTGACATATTGTCCTGTGTGTAACAAAAGCTTTACCTTGTTGCGTTATTACGCGGAACATATTCACAAGCATATACAAGTAAAAATGCTTAACGATgcgaaaaatcctttggaataCGAAAACTCGACCGTTGATAGAAAAATCGAATGCCCCGAATGTCAACAAATATTTCCCAACAAGGGTTTATATGATCTGCATTATACAATCCATACGTTCGATAGCGACGAGGGGATAAGGTGTTCGtgttgttttaaaaagtttatcaCATGTAAGAATTATTCGCTGCACATTCAGAAGCATATAGAAGAGAAAATGGGgaactCCAGCCAATCCATCCAAGTAAAGACCGAATCTGAACCTGCGCTGACCACTTCGGTTGCGTGCTCTCATTGCGGAGAAGAATTTAGCCACGAGGAAATTTTGGATTTCCACGCGACGATCCACAATCCTGGCAAAGTGATGAAATGTCGGTTTTGTTTCAAAACATACATCAATATCGTATTTTATACTGAACATGTCCGCAATCACATCAGTGCTTGTGAAAGctgcAAAATATGCTCCAGCGTGTTTTTCAACAAACGAGACTTTACGGCACACATGAAAACTCATAACATCACCTGTGGTAAATTCCAATGCCGTCACTGCCCGAGAAAGTTTCCAAAGGATTGCAAACAAGTATTCTGCAAGATCGAGACGCTTAACAGGCACAGAGCGGCCGAACATCCACCCGATAGATTGCGATGCAAAAAGTGCGAGATTGTGTTCCGTGACGAACGCGAGTATCGGTTGCATTTTCTCGAACACCATTCGCAGAGTTTGACGCAGTTTATTTTGGCGCAAAACCAGGCAACGAGCGGCGGTAGTTATTCAGAAGATGCCGCTGACGAAGatttgtccACCATGGAAACGGAATATGAATTCGAGCGTATCCAAGCCAGTTTCCCACCCGGGAAAAGTTTCTCTCTATCATTAAGCAGTTCAGAAAGCACTTCAGAAAGTTTGTCACCGGACAAGAAGCATTTCTTGTCGAAAACAACAGAACAAAATGGGGAAGAATTCGAACCAGAAAAGAATTCTTATGAAATGAATCCTTATTTAGAAGAAGCAGGCAGTTCTAAGGGAGGCGATACCGGAGAAACTGATATAGGTTATAAGTGTGACCAATGCGGAAAAAAATTCTCgagaataatttattttaagaaacacaTGCAAAATCATCTCTTTCTCAAAGATCTTGATTTGCAGGTTAATGGTGTAAGATAA
- Protein Sequence
- MYTAHGRTHPNWKEKVRERQRSLMESKPKRALSNKFRDWSHLGHTKIASIVTNSLLEMRSDIMTPKINTNKPFKTQLSWENKTEKSLVQSGKLLWYTEGSKMDIYIQWIRSGNKLSMSDSEEIIEDQVERSVVKSETIIDEDENEIESLSHFLEPSIETPQEEPPVKIKVKTEILENTSLKRIKKETEKEQNTNATDKRKTKLGAKKAAVKRRKGAKTEIAGSEETSIHKIKQEEYSDFDKETYNEDEEHVTANSAIKCMYCDEMFVNRADCDLHHTVHTFDNTVVTYCPVCNKSFTLLRYYAEHIHKHIQVKMLNDAKNPLEYENSTVDRKIECPECQQIFPNKGLYDLHYTIHTFDSDEGIRCSCCFKKFITCKNYSLHIQKHIEEKMGNSSQSIQVKTESEPALTTSVACSHCGEEFSHEEILDFHATIHNPGKVMKCRFCFKTYINIVFYTEHVRNHISACESCKICSSVFFNKRDFTAHMKTHNITCGKFQCRHCPRKFPKDCKQVFCKIETLNRHRAAEHPPDRLRCKKCEIVFRDEREYRLHFLEHHSQSLTQFILAQNQATSGGSYSEDAADEDLSTMETEYEFERIQASFPPGKSFSLSLSSSESTSESLSPDKKHFLSKTTEQNGEEFEPEKNSYEMNPYLEEAGSSKGGDTGETDIGYKCDQCGKKFSRIIYFKKHMQNHLFLKDLDLQVNGVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -