Opom032958.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:80152672-80155863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 17 7.3 1.2 1 23 166 189 166 189 0.94 2 17 0.19 26 6.8 2.8 2 23 197 218 196 218 0.97 3 17 0.019 2.7 9.9 5.7 1 23 227 249 227 249 0.98 4 17 0.11 16 7.5 0.9 1 23 257 279 257 279 0.94 5 17 0.03 4.2 9.3 5.6 1 23 288 311 288 311 0.98 6 17 0.0066 0.93 11.3 2.1 1 22 318 339 318 342 0.90 7 17 0.0015 0.22 13.3 0.9 3 23 361 381 359 381 0.96 8 17 0.015 2.1 10.2 0.8 1 23 390 413 390 413 0.94 9 17 2.6e-05 0.0037 18.9 1.3 1 23 451 473 451 473 0.98 10 17 0.07 9.8 8.1 2.8 1 23 479 501 479 502 0.95 11 17 0.26 36 6.3 2.6 1 23 510 532 510 532 0.97 12 17 0.0017 0.24 13.2 2.8 1 23 541 563 541 563 0.97 13 17 0.049 6.9 8.6 2.5 1 23 572 597 572 597 0.94 14 17 0.37 52 5.8 4.1 1 23 606 629 606 629 0.90 15 17 0.58 82 5.2 3.0 1 23 638 663 638 663 0.97 16 17 0.0048 0.67 11.8 0.5 2 23 672 694 671 694 0.93 17 17 8.2 1.2e+03 1.6 1.2 2 23 702 724 701 724 0.92
Sequence Information
- Coding Sequence
- ATGGAATATCCTACTGTAGAACATCCTACTATGGAAGATATCATTGTAGAACATCCTACTAGGGAACAGAAAAAAGAAATCGTTATGTCCTTGGAACCATatattgacataaaaatgaaagacgaaGAACATACAGGTTGtgtcaaaaaagatCCTGCTGTGAAACATCATACTGTGAACCAGTCCACTATTGAACATCCTTTTTTGGAACACTTTGCTGTAGACCATCCTACTGTGGAAGATCCTACTATGGAATATCCCACCCTGGAAAACTCTACTATGGAACATTCTACCATGGAACAGAAAAAACAATTAGTTATTTTTCTGGAACCAATTATcgacataaaaataaaagaagaagaatatCTTCTGAGTCAGAAACTGGTGGAAAAATTAAGCCGCAGATCGACCAGACTCAAAGTCGAACCggacaagaaaaaaatagtatCAGGAAATTGTTCTGATAATCTTGAGTTTAATGTGGAAATCAAACGTTTTGTATGCATTATCTGCTCCACCCAGTTCAAGCGAAAAGGTGACGGTAGAAAGCACATGTTAAAAAAGCACAACCCGAaggtgaaatttttaaaatgtgaccATTGCGACTTTAAAACAAGATACGAAATAAGCATTAAAGGACACCAGAAAACTCATTTACTTGACGACGAAGTCGAAATGTTTAAATGCCAATATTGCCAGTTCAAAACGAAATATAGAAGCTCTATGCATGCACATTTGAAAGTACATACCGCcgataaaaatagttttttcaaatGCGACGATTGCGAATATCAAACgttgtttcaaaaaaatttgagaaaacaTGCAGTGATACATCAAAACGACGAAGACGCCATCTGGTACAAGTGCACACACTGTAAgtataaatcgaaagttaaaGCCACGTTAAAATTGCACAATAAGACTCAACACAATGACAATGTGAAGATTTTTTCATGTGCCAAGtgtagttttaaaacaaaacaccGAAATAATTTGAGAAGGCATTTAGCAGTGGTCGACCACGATAAAGAAGAGGAAATATTTTGCGAATTTAACGCCAAAACAAACAAGTACGGATGTTTGGTGTGTCACAAGGAATATAGCGCTAAGAGTAACGTGAAAAAACATCAAATAGTGCACAAGGATGCCgataaaattgattattttaaatgcGAGCGCTGCTCGTACCAAGCACGGAGAAAACAAAGTTTAATAAATCATATAACAGAAGAACACGAAGAAACTGCAACAGTATATAGTTGTTTCTGTTGTACTTACCAGACCAAACTTAAGTCGAAACTCGTTTTACATGCGAAAGTTCATCAAAGCATGGATAAGCTTAAAACATATAATTGTAACCTTTGCCCCTATCGTTCTAGACAATCTAGCAACTTAATGACCCATCAGCTTACGCATAGTGATGTAAAAAAGTTCAAGTGCGACTCTTGCGAGTATCAAAGCAAACGCAAACCGGAAATGAAAAAGCATGTGTTGCTACATCATTCAACTAATACCTCAACTTTGTATTTCTGCGCGTCGTGCGATTTTAAAACCAAGCATAAGGGAAGCTTACCGAAGCACCTATTAACGCACCGAAATCCAGAAGAAGCAAATAGATATTTCTGTTCGTTCTGTCAATACGGCTGCAAAACCAATTCCGACTTAAACCTGCATTTGTTGATCCACAAAGACCCGTCAGAATGCCAAATGTACAAGTGTAATTTTGAAGGCTGTGATTTTACGACAAAACACAAGGGATACATGTCAAAGCATTATTTAGCTATCCACGAAGACGAAAAAAACGTTCCCTTGTACAAATGCAAAAAGTGCCCCTACACGAGCAAGATGCAAATGTACTTTTACAAACATAATCTTTATAATCATTCCGAGGAGTcgaaaaagaaaagatttaaatgCAATTTCGAGAACTGCAACTTTCAGACGAAACAAATTCATGGCTTAAGAGGCCATATTAAAAGATCGCATCCCCCAGAAGACACTAAAATGCTGAGTTGTTCTTCGTGTGATTATACAACACGCGTGCCTTTTTATCTGAGACGGCATATCCAAGGAAACCACGTCGAAAATccgaaaatggtaaaatgcaaattttgcaGTTTTACGACAAAATGGAGCGGCAGTATTGCAAAACATGTCAAACGAAATCATCGTTAG
- Protein Sequence
- MEYPTVEHPTMEDIIVEHPTREQKKEIVMSLEPYIDIKMKDEEHTGCVKKDPAVKHHTVNQSTIEHPFLEHFAVDHPTVEDPTMEYPTLENSTMEHSTMEQKKQLVIFLEPIIDIKIKEEEYLLSQKLVEKLSRRSTRLKVEPDKKKIVSGNCSDNLEFNVEIKRFVCIICSTQFKRKGDGRKHMLKKHNPKVKFLKCDHCDFKTRYEISIKGHQKTHLLDDEVEMFKCQYCQFKTKYRSSMHAHLKVHTADKNSFFKCDDCEYQTLFQKNLRKHAVIHQNDEDAIWYKCTHCKYKSKVKATLKLHNKTQHNDNVKIFSCAKCSFKTKHRNNLRRHLAVVDHDKEEEIFCEFNAKTNKYGCLVCHKEYSAKSNVKKHQIVHKDADKIDYFKCERCSYQARRKQSLINHITEEHEETATVYSCFCCTYQTKLKSKLVLHAKVHQSMDKLKTYNCNLCPYRSRQSSNLMTHQLTHSDVKKFKCDSCEYQSKRKPEMKKHVLLHHSTNTSTLYFCASCDFKTKHKGSLPKHLLTHRNPEEANRYFCSFCQYGCKTNSDLNLHLLIHKDPSECQMYKCNFEGCDFTTKHKGYMSKHYLAIHEDEKNVPLYKCKKCPYTSKMQMYFYKHNLYNHSEESKKKRFKCNFENCNFQTKQIHGLRGHIKRSHPPEDTKMLSCSSCDYTTRVPFYLRRHIQGNHVENPKMVKCKFCSFTTKWSGSIAKHVKRNHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -