Opom030126.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:15340203-15346949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 31 6.5 0.5 1 23 185 208 185 208 0.93 2 13 0.78 1.1e+02 4.8 0.4 3 23 280 300 279 300 0.97 3 13 0.24 34 6.4 2.3 1 23 309 332 309 332 0.94 4 13 0.0094 1.3 10.8 0.5 2 23 346 367 345 367 0.97 5 13 0.0073 1 11.2 1.3 1 23 376 398 376 398 0.95 6 13 0.00063 0.088 14.6 2.0 1 23 408 430 408 430 0.98 7 13 0.00089 0.13 14.1 1.5 1 23 439 461 439 461 0.97 8 13 0.083 12 7.9 1.3 1 23 466 488 466 488 0.98 9 13 0.12 17 7.4 1.1 1 22 497 518 497 521 0.91 10 13 0.00016 0.022 16.4 1.3 1 23 552 574 552 574 0.96 11 13 0.00031 0.044 15.5 1.4 1 23 583 605 583 605 0.98 12 13 0.075 11 8.0 1.9 1 23 614 636 614 636 0.98 13 13 0.0074 1 11.2 2.7 1 23 645 668 645 668 0.98
Sequence Information
- Coding Sequence
- ATGGAGGGTCTTCAGGAATCCAAAGAGGATCCTCTGTTGGGCCTCGATGACGGTTGGAAAAATTGGTTGAGGCCCGTTGATGAACAAGGTGTGCAGGGCCCCTACCCCGTTAACAGCATGGAGGCAGTTAGTGAAGAGGGTGTTAAGAATGAGGAATCAAAAGAGGAGATTGTTGTGTCTGTAGATGCTGCAGATATTACTGGTATTAGAACTGCCATTAAAGAAGACCCCTCCTACTCAGAAGACTCCAAGGATGGCGAATTTAAAGAAGAAATTAATCCAATTAAAaaagatctttttaaaaataattcagcTCTGAACAGTCAAAAATATGGAAGCGTATTTGTGAAATCATACAGCTCAGTTACTGTAAAAGAAGAACCAGTAGatgaaatatcaaaaatttttgaagagacCCCTTTGGACgtggaaaaaagaaaatttcacCAACAGATCTTCAACGAAGTCATGGAAGATTGTAACGAAAAAACTTTCGATTCACTTCAGCAAGAATACATCGTTCGGTTACGCGAAGTAGCcaacattgaaatttttaaatgtgccTCTTGCAACTATCAAACAATGaacatagcaaatttaaaaagtcatTTGTTTTTGATCCACAAACGCGGTTCCTTAAAAGTGAAAATGTACAAGTGCTTTGCTTGTACATATAAAACCAAAAGTTTAGCTTGTATCAAACGACATGAATGTGAACCTTTGAGTGACAATTATAGTGATTTCGACGCGCCATATTCACCAGACAGTGCTCCTTTAAGTACtctgattaaaaataaaaaaacatttagcaaAGTAGACACAGAAAAGCAGAAACTTTGTGATTTGTGTACGTTTCAAGCCAAGGACCGAAAAACTTTGGAAGAACACTACATAAGTCATAAAGATCCTGAAGATTTTCGAACTTTTTTATGTTACGTTTGTCACTACGAAAgtaagtataaaataaatatcaaaaaacacttGTTAAAAGCGCACCAAATAACTACCGTGGGCATGGATaagtataaaaaactaaaatgcgaATCTTGCGATTTTAGAACGGACCAAAAGAAGTCGTTAGAAGTACACGCCTTGACTCACAAAAATCCCGACGAACtcgaattatttttttgtaacgttTGCGACTTTAAAACGAAAAACAAACCATATTTAAAGATTCACTCTTTAGTACACAAGAATCCCGACgagatcgaaaaaaaatacatgtgcGAAATATGTAGCAAAAAATTCCGAGTCAGAAGTAAGCTTCAGTTTCACTTGTTAACCCACAAAACAAATGACGAGGTAGAGCTATTCTCTTGCAGCGAGTGCGACTACAAGACCAAACTCAAGTACAATCTTAGAATTCACAAGGAAATACATCAAGAACCCTCCTTCGTTTGCGACACTTGCGGTCTTCAAAGTAGAAGAAAATGGAACCACGAAATGCACCTTTTAACCCACAAAAATGACGACGAGGTTCAGATATTTAAATGCGCGGTGTGCGCTTATCAAACCAAGTTCAAAGACAGATTGAAACGTCATTTGGCCAAGGGAACTCACTTTGGCAACAAGAAGATGACAGTAAAAAGACAAAGAAGAAGTAAAATAACATCGGGACCGAGCGATCCGGTGGTGAAAGTGAAGAAAAAGTTTATTTGTGATGTGTGTGGCATAAAATGTTCACAAAAAAGTGCCTTAAACACTCACtcgttaaaacacaaaaaacccgacgaaataaaaatgcacaGGTGCGATCAATGCGGCTACGAAACGCGGATAAAAGGCAACCTGACAAACCACCTCAAAATCCACAAGGATCCCTCGGAATTTCCCACATTTAAATGTGACACGTGTGGGCTTATTAGCAAAAACAAGTGGAACCACAAGATGCACGTGTTGACGCATAAAAATTCGGCAGAATGTGAGCTCTACAGCTGCACCATTTGCAGTTATCAGACCAAGTTTAGGGCGTATCTTAGAGAACATTTGAAAAAGAGGCACAATATTAATACTGCAGGAAAACCGGGTAGGCCGCCAGTAAACTCGGATTAA
- Protein Sequence
- MEGLQESKEDPLLGLDDGWKNWLRPVDEQGVQGPYPVNSMEAVSEEGVKNEESKEEIVVSVDAADITGIRTAIKEDPSYSEDSKDGEFKEEINPIKKDLFKNNSALNSQKYGSVFVKSYSSVTVKEEPVDEISKIFEETPLDVEKRKFHQQIFNEVMEDCNEKTFDSLQQEYIVRLREVANIEIFKCASCNYQTMNIANLKSHLFLIHKRGSLKVKMYKCFACTYKTKSLACIKRHECEPLSDNYSDFDAPYSPDSAPLSTLIKNKKTFSKVDTEKQKLCDLCTFQAKDRKTLEEHYISHKDPEDFRTFLCYVCHYESKYKINIKKHLLKAHQITTVGMDKYKKLKCESCDFRTDQKKSLEVHALTHKNPDELELFFCNVCDFKTKNKPYLKIHSLVHKNPDEIEKKYMCEICSKKFRVRSKLQFHLLTHKTNDEVELFSCSECDYKTKLKYNLRIHKEIHQEPSFVCDTCGLQSRRKWNHEMHLLTHKNDDEVQIFKCAVCAYQTKFKDRLKRHLAKGTHFGNKKMTVKRQRRSKITSGPSDPVVKVKKKFICDVCGIKCSQKSALNTHSLKHKKPDEIKMHRCDQCGYETRIKGNLTNHLKIHKDPSEFPTFKCDTCGLISKNKWNHKMHVLTHKNSAECELYSCTICSYQTKFRAYLREHLKKRHNINTAGKPGRPPVNSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -