Opom010308.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxystoma pomonae
Gene Symbol
-
Assembly
GCA_963921995.1
Location
OY998165.1:9362858-9390038[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 6 8.5e+02 2.0 0.1 1 19 612 630 612 631 0.86
2 8 0.19 26 6.8 0.4 1 23 644 667 644 667 0.85
3 8 0.00083 0.12 14.2 0.9 3 23 724 745 723 745 0.96
4 8 0.0036 0.5 12.2 0.2 1 23 762 784 762 784 0.96
5 8 0.00087 0.12 14.1 3.8 1 23 856 878 856 878 0.99
6 8 0.00014 0.02 16.6 3.3 1 23 885 907 885 907 0.99
7 8 7e-06 0.00098 20.7 0.5 1 23 913 935 913 935 0.98
8 8 0.00035 0.048 15.4 3.4 3 23 943 965 941 965 0.90

Sequence Information

Coding Sequence
atggTAAACCACTGCGCTATTCACGGTTGTATATCCAAATCCGGTAATACAAGACACCAAGGTCACGTTAGCACTTTTGCTTTGCCAAGAGATCCTGAGCTAAGacaAGAAGATGTTATCAAAATTGACCGAGTCATAGTTGACAATGAATTTAGGGAATTCCCcagaaaaaactacaaattgAAACCACATGCCATCCCAGTTTTTTTTGGCAGCCATGCTGCTCTAGAACCATCACTTATTTGCACCAGCAAAGATCTCAGTAAAAAGTATGGCAAGAAAATCGTTGGAGCTGTGAGAAAAGACTCCAGTAGTGATGGGTTTGAAGACTGTGACGGAAGtactttcaacaaaaaaaaagatgcatccCAGGTGGCACATGATATCCTTTTTACCAAGATACAAGATATTTCTGAGCGTGTAGAAGACATCCCGAACTCTAATGTTGACAATCCGGCCATTTTCAGCTATGATAATGAAGAAATAGAACATCTTAATCACATTGCCGACTTTTACCAGCAATGTGAAGATTTACAGAAGAACTGGGTATTTTTGCAAGAACGAAATAAAGCTTTTTTGTGTCATATTTCACTTGACACTGATGTTGCCATGATGGATGGATCGGTCTGTTTTAAAGATGATTTGAGAGTTGTTCTTGGCATTGGACAAGaaaaaatccaAGAAGACTACattccaagatattttaaaaagatcaaCACAACtgacaaacttcaagatctaatggatTTCGTCATGAGAATAATATCCAaagcaaaaaaactaaagacaGATAGGacacaaaataaagaaaatagtcCAAGAAATAATATCATGAGTACTAAAGAATTTATTAATGACAGTATTATTGAAATGCCGAATAAACCAAACCATCCAGAAAATATGGTAAAGGATAATGAGGTAATTACTCAGTCTAaaattcataataataataacaaaagcATCATACTCAACTATACTCAAAGTGCTCCTAAAAGCTACCCTGCAGAGGTCATCGACCGAAACCGTAGcaaccaagaaaaaaatttgtttaacaaTTTAAATGAAACTGATGATGAATTTAATAAATGCCAAGAAGGGGATTATATTAAAGACAACAAGGAAGTCACATTTGGAGAGGATGATGAAATCAatccaaataaagaaaaagaagttGAAGAAAATAATGAAAGAATCAATCAAAATGAAGAAGAAGTGGAAGAAAACAATGAAGAAGTTGCCTACGAAACAGATCTAATTAATAACCAAAGTGAGGGGGAAAGTGTCTGTTATGAATACATCTCTGAATATCTGGATGACAATAAAGATACTCCTATTGAAGATAAAACCGATAATTTGAAAGGTGAACACAACCATGAAGAACATTTAGATAAGCTTGATGGCAATGAAGATGATTGTTACTTTGATAAGGCTGActatattgaaattaaaatggAAACAGATTCGGAAGGAGAAACTTGTGAGGATGAACAGCAAATTGATGACTTAATGGGTGTAATGAAGGAGGTAAATGAATGGAAACTGAAACAATCGAAAGATAATAATTACTTTTACACAGCTGAAGAAGGCAAAATAGTTCATGAGCGAGCAATACAGCTCGAATCAGATTTAAGGAACGAATCAGAAATGCAAGAAGACTTTCAAGTACAGGAAGAATCAGAAGTACAAGGAGAATCAGAAATTCAAGAAGAATTGGAAATGCAATGCCACTCAGAAATTCCACACGGAGCAGAATTAGATACTGAATTAGAATTGCCGTATGATGATGCGATTCAAAACGACTCAGAATTAGATGAAGAAAATTCCAAAGATACATTTTATTGCGCACAATGCAATATCGTTTATGGCGATCAACAAGTATTTGTGGAACACCTTCCCCAATGTCAGGATGGCAGTGTAGAAACGATGGTTTTTGTTTGCGAACTTTGCAATAAAGagTTCCAGTCAGACTTCGAACTGGGCGACCATTTCACGATCAGCCACAACGTCGAAAAGTCATACGAAACCCAAACCGACCACATCAGGCAACACGCCGCGGCCGACACAAATCTTAGCCAGCCCGCAGAAACAGATCTTAGCCAGTCCCAAGAAATAGATTTTATCCAGCGCCAAGAAATAATAGATCTCCAGCACAGAGAAGTTTACAGGGACTGTGCCCTTTGCGACAAGCAGTTTACCAGTAGAAGTGGCTATTTGAATCATCTGAAGAGCAAACACCCCGCTTTCGGGGGCGGTAGGGGGAGTACGACGGCATCAGCGAAACTCTACTCCTGTACGTTGTGTAGTAAAAGTTATCGTTCGGCGATTGAATTGGACGGACATCTTAACGGACATAGAGATTTGTCCAAAGCTTTTGACAGTATAGACCATAAAATATTGTGTCAGAAGCTTAATGGTTATGGTGTTCGGGGAGTAGAGTTGATGTCGTTTGAGTCTTATTTGAGTGATAGAAGTCAATACACCATAGAAAGACATAATGGTGAACTTCTTAAGTCAATGTCTGTACAAAAAGGTGTCCCTCAGGGGTCCATTCTAGGAGAAAAGCCCTACACCTGCGAAGTGTGCCACCGAAGCTACCAATCGAAAAACTCGCTTTACACGCACGCGAAAACGCACACCGGCGAAAGCAAGATGTACCAATGCGACCACTGCGAACAGGTTTTCACGCAAAAGGTGAACTGCATAGCGCACATGCGCCTTCACACCGGCGAGAAACCTTTCACCTGCGAGGAATGTGGGAAGAGCTTTACTTTTGTCGGATTGTGGAAGACTCACCAGCGAATTCACCAAGGCATCATGCCCTACGGATGCCCGGTGTGTCACAAGAAGTACCACGACAAAAGTTCTCTTAAAAAGCACCAATTGCGACAAGGTCACAAAGGTGAAGCGATAATAGACGAGAATCACATCAAGATATCCATGTACAGAAAGAAACGCTTGCAGCGTAAATCGAAACAAGAAGAGATCGAATGCTAG
Protein Sequence
MVNHCAIHGCISKSGNTRHQGHVSTFALPRDPELRQEDVIKIDRVIVDNEFREFPRKNYKLKPHAIPVFFGSHAALEPSLICTSKDLSKKYGKKIVGAVRKDSSSDGFEDCDGSTFNKKKDASQVAHDILFTKIQDISERVEDIPNSNVDNPAIFSYDNEEIEHLNHIADFYQQCEDLQKNWVFLQERNKAFLCHISLDTDVAMMDGSVCFKDDLRVVLGIGQEKIQEDYIPRYFKKINTTDKLQDLMDFVMRIISKAKKLKTDRTQNKENSPRNNIMSTKEFINDSIIEMPNKPNHPENMVKDNEVITQSKIHNNNNKSIILNYTQSAPKSYPAEVIDRNRSNQEKNLFNNLNETDDEFNKCQEGDYIKDNKEVTFGEDDEINPNKEKEVEENNERINQNEEEVEENNEEVAYETDLINNQSEGESVCYEYISEYLDDNKDTPIEDKTDNLKGEHNHEEHLDKLDGNEDDCYFDKADYIEIKMETDSEGETCEDEQQIDDLMGVMKEVNEWKLKQSKDNNYFYTAEEGKIVHERAIQLESDLRNESEMQEDFQVQEESEVQGESEIQEELEMQCHSEIPHGAELDTELELPYDDAIQNDSELDEENSKDTFYCAQCNIVYGDQQVFVEHLPQCQDGSVETMVFVCELCNKEFQSDFELGDHFTISHNVEKSYETQTDHIRQHAAADTNLSQPAETDLSQSQEIDFIQRQEIIDLQHREVYRDCALCDKQFTSRSGYLNHLKSKHPAFGGGRGSTTASAKLYSCTLCSKSYRSAIELDGHLNGHRDLSKAFDSIDHKILCQKLNGYGVRGVELMSFESYLSDRSQYTIERHNGELLKSMSVQKGVPQGSILGEKPYTCEVCHRSYQSKNSLYTHAKTHTGESKMYQCDHCEQVFTQKVNCIAHMRLHTGEKPFTCEECGKSFTFVGLWKTHQRIHQGIMPYGCPVCHKKYHDKSSLKKHQLRQGHKGEAIIDENHIKISMYRKKRLQRKSKQEEIEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-