Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998170.1:78074752-78088798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.24 33 6.4 0.4 1 23 159 182 159 182 0.95

2 14 2.7 3.8e+02 3.1 3.8 2 23 192 213 191 213 0.96

3 14 2.4 3.3e+02 3.3 0.6 5 23 252 271 251 271 0.88

4 14 0.079 11 7.9 0.3 3 23 279 299 279 299 0.99

5 14 0.01 1.4 10.8 2.5 1 23 308 331 308 331 0.97

6 14 2.1 3e+02 3.4 0.2 2 23 344 365 343 365 0.92

7 14 0.0042 0.58 12.0 2.2 1 23 374 396 374 396 0.98

8 14 0.00032 0.045 15.5 3.7 1 23 406 428 406 428 0.98

9 14 9.5e-05 0.013 17.1 0.7 1 23 438 460 438 460 0.98

10 14 2 2.9e+02 3.5 4.1 1 23 469 491 469 491 0.97

11 14 0.013 1.9 10.4 3.2 1 23 500 524 500 524 0.92

12 14 9.9e-06 0.0014 20.2 2.5 1 23 554 576 554 576 0.99

13 14 6.5e-05 0.0091 17.6 1.4 1 23 585 607 585 607 0.97

14 14 0.19 27 6.7 1.0 2 23 617 639 616 639 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.24	33	6.4	0.4	1	23	159	182	159	182	0.95
2	14	2.7	3.8e+02	3.1	3.8	2	23	192	213	191	213	0.96
3	14	2.4	3.3e+02	3.3	0.6	5	23	252	271	251	271	0.88
4	14	0.079	11	7.9	0.3	3	23	279	299	279	299	0.99
5	14	0.01	1.4	10.8	2.5	1	23	308	331	308	331	0.97
6	14	2.1	3e+02	3.4	0.2	2	23	344	365	343	365	0.92
7	14	0.0042	0.58	12.0	2.2	1	23	374	396	374	396	0.98
8	14	0.00032	0.045	15.5	3.7	1	23	406	428	406	428	0.98
9	14	9.5e-05	0.013	17.1	0.7	1	23	438	460	438	460	0.98
10	14	2	2.9e+02	3.5	4.1	1	23	469	491	469	491	0.97
11	14	0.013	1.9	10.4	3.2	1	23	500	524	500	524	0.92
12	14	9.9e-06	0.0014	20.2	2.5	1	23	554	576	554	576	0.99
13	14	6.5e-05	0.0091	17.6	1.4	1	23	585	607	585	607	0.97
14	14	0.19	27	6.7	1.0	2	23	617	639	616	639	0.96

Sequence Information

Coding Sequence: ATGTGGGACCATCCTGAGGCTTCTATCCTGTCTCGAAATGAAACTGGAACCGAGATACACTTTAAAAGTGATTTTAGAGGAAACGAAGATGAGAGTGCAGAGACCAAAGAACACATTAATTTGCCAGCCATGAGCATTAAAGAGGATATCAAACAGGAACCTTTGGATCAAGATTCCTTCTCCAATAGTTCCACGGAATCAGAACCCGAAGAGAAATCAACAACAGCCCAACCGGAAACTCTTAGTCAACACTACGAGGAAATTTCAATAAAGAGCTTCACGTCAAATTTCGTAAAGGAGGATCCTATGAATGACATCACCACTATATACAAAGAAAACgttctaaattttgaaaaacaaaagtaccaCCAACAGATTTTTGATAACATTGTAGGAGATCTGAACCAAATTAAAATGGCAGACATCGAAAACAAATATATTGACCATATTAGGCAAGCGGCCAAACTAGAAGTTTTTAATTGTTCTTCGTGTGAATACCAAACCATGCAAAAATCGAACATTAGACTACATTTGGCCATAATTCACAAGACAGATATGGAATCTAACATGCTGAAATGCCTAAAATGTTCTTATACTTGTAAGTTAGCCAAATTCATGCAAAATCATGTGTCAAGTCATCAGGATGAAGAACCAGATTTTGAGAATGACAACAATTACTCTTATGATGATAACGAAGATGTTGCTAGCGAGGAAAAAAGCAAGAAAACTCGAAATCTCGCGCATAGGTTTTCAAAATGTGactttaaatcgaacaaaaaggtcgaattaaaaaaacatgcgTCGTTGAGTCATcgagagaaaaataaaatgtggtgtGACCTTTGCACCTTTGAAACTGAGGACAAAGAAACATTGATCGCGCACAAACAGACTCACAAATGTCCCGACAATGTGAAAAAGTATAGCTGCTACAGGTGCCAATACGAATCTTACAGCAAAGATTCCttgaaaaaacatttattaaagttgCACGATATTGTTACAAAATATTACTCaattaagattttaaaatgtgaattttgcgATTATAAAACCGACTTAATTGAGTCAATGCGCGTGCATGCTTTATCTCACAAAAGTGCGGATGAAATTCAGTGGTTCCAGTGCGATCTTTGCGATTTTAAGACCAAATTCAGAAGTTCGTATACCATTCACCTTATCCGCCACAAAAATCCGGAAGAAATTGTAAAGAAATTTATGTGCGAGTTTTGCAGCTTCAAATTCCGTTTCAAAGGAACGCTAAAGCGTCATCTGTTAACCCATCAATCTTCAGACAAGATCACCCAGTGGTTTAAATGTTCCGATTGTGATTACAAGGGCAAAACTAGATCGGGTTTAAGGGTTCATTTAACAGTGCATAAGGGTCCCTCGGAAATGAAAATGCACGTTTGCGATATATGTGGCTTGCACAATCGAAGAAAATGGAATCACGAAATGCACATGTTAACTCACAAAAACGCCGAAGACGTGGAAATGTTCAAATGTACATTTTGCAATTATAAAACGAAATTTAAGAACGGACTGAGAATACACTTAAAAAGGGGAAGTCATCGTTGTGGGACAGAGAAGGGGGTAAGCCTCGGAGTAGTCTTGTCCAGCAAAGGGGAAAGATCTAAGGAAACAAAGCTGACTCAAACATTTAAGTGTCCAGAATGCGATTATCGAACTAAATATAAAGGTGGTTTAAAACATCACATCAACACTCACAAAGACCCCAGCGAAATTAGCATGTTTAAATGCAATTCCTGCACCGTTCAATTTAGGAGAAAGGAAAACCTAACTGTTCACTTGTTACTGCATAAGAGCTCGGACGAAGTGGAGATGATTACCTGCTCTTTGTGTTCCTACCAAACCAAGTTTAGGGCGTATATGATTGCCCATTTGAAAAAACGGCATAAAATTGTGGCACGGAAGGATGAATATAAGAAGTATTCGATATCCAGCAATTCACATGTAAATTCAAAAGAATAA
Protein Sequence: MWDHPEASILSRNETGTEIHFKSDFRGNEDESAETKEHINLPAMSIKEDIKQEPLDQDSFSNSSTESEPEEKSTTAQPETLSQHYEEISIKSFTSNFVKEDPMNDITTIYKENVLNFEKQKYHQQIFDNIVGDLNQIKMADIENKYIDHIRQAAKLEVFNCSSCEYQTMQKSNIRLHLAIIHKTDMESNMLKCLKCSYTCKLAKFMQNHVSSHQDEEPDFENDNNYSYDDNEDVASEEKSKKTRNLAHRFSKCDFKSNKKVELKKHASLSHREKNKMWCDLCTFETEDKETLIAHKQTHKCPDNVKKYSCYRCQYESYSKDSLKKHLLKLHDIVTKYYSIKILKCEFCDYKTDLIESMRVHALSHKSADEIQWFQCDLCDFKTKFRSSYTIHLIRHKNPEEIVKKFMCEFCSFKFRFKGTLKRHLLTHQSSDKITQWFKCSDCDYKGKTRSGLRVHLTVHKGPSEMKMHVCDICGLHNRRKWNHEMHMLTHKNAEDVEMFKCTFCNYKTKFKNGLRIHLKRGSHRCGTEKGVSLGVVLSSKGERSKETKLTQTFKCPECDYRTKYKGGLKHHINTHKDPSEISMFKCNSCTVQFRRKENLTVHLLLHKSSDEVEMITCSLCSYQTKFRAYMIAHLKKRHKIVARKDEYKKYSISSNSHVNSKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -