Basic Information

Insect: Oxystoma pomonae
Gene Symbol: PRDM1
Assembly: GCA_963921995.1
Location: OY998166.1:13406905-13445277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.5e-05 0.0035 19.0 2.5 1 23 609 631 609 631 0.99

2 5 7.4e-06 0.001 20.6 5.1 1 23 637 659 637 659 0.98

3 5 2.5e-06 0.00035 22.1 4.1 1 23 665 687 665 687 0.97

4 5 0.0018 0.26 13.1 2.2 1 23 693 715 693 715 0.97

5 5 0.0001 0.014 17.1 0.1 1 22 721 742 721 742 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.5e-05	0.0035	19.0	2.5	1	23	609	631	609	631	0.99
2	5	7.4e-06	0.001	20.6	5.1	1	23	637	659	637	659	0.98
3	5	2.5e-06	0.00035	22.1	4.1	1	23	665	687	665	687	0.97
4	5	0.0018	0.26	13.1	2.2	1	23	693	715	693	715	0.97
5	5	0.0001	0.014	17.1	0.1	1	22	721	742	721	742	0.95

Sequence Information

Coding Sequence: ATGTTTGTTATCATTTTCCCCGAAGgtctTAAATGCCTTGAACAGAAACTGAAATTGGCCAAGGAGGACAAGATGAGGGAGGAGGCGAGGGAGGAGACTGCAGCAACCTCGAGTTCTGACGACTTTAAAATCGGCAACATTGGAGAGGAGGAATTCGAAGAGCATACCACGTATATTGTTCCTGACCTCCCAGCCGAGCATGGCACTCCTAACAGAGCCGAAGCCACTCTCCCCAGAAATTTGGTGCTCAAACCTGTTCAGGCATTGTCAGATGCACAAGGAGTATGGAGCACGGGATACATCCCACGAGGAACCCGATTTGGCCCCCTCGTGGGAGAGATTTATGCCAAAGACGCCGTGCCTAGTTCAGCCAATAGGAAGTACTTTTGGAGGATCTACAAGGATAATGAACTTTACTATTACATAGATGGTTCAGATACTACAAAAGCCAACTGGATGCGATATGTCAACCCTGCTTACTCCAGCGAATCACAAAATTTAATTGCTTGCCAGTACAAAATGAATATTTACTTCTATACGATAAGGGACATATTGCCCAACCAAGAGCTTCTAGTATGGTATTGCAAGGAGTTCGCTGAAAGACTAAACTACCCTCTCACTGGAGAACAAATGCTTCAAAGAATAAggcAACAAGTGCAACAATCATCAGAAGCAATCAGTGTTAGTACCTCAGATTCACCCCCCAAAGATCCTTCGTACGATCATCAGCTAACCCCCACTGGAGGATCGGTCCGATCAGATGAAGGatACCACAGTAACGGCTATCACGACGAGGCAGTATTTACTCCCCCAGAGGATTCTAGCGATTCCGACAGTGAAAATAACTACGttttagattttagtaaaaaggCAAATGCTAAAGAATCCACAGTTATTAAACCCGTTGCGCAGGAAGTTCAAAAGAACGAGTACAGAAAAGTGAAAATTAAGATCTCAAAGGCTTATACTaattacaaaaaaggtgaaagcGATCATGAAACGGGCAAAGAGACTCCTCCCCCTGATACTTCAGTACCTGAAATAACCACAGTTCTCCCGGCTAGGGTTATTACCCCTCCGAATGGGAGCGTTATTGTCACAGAGTCTTCTCACGAAGTTCCTATCCAAATCTATGAGGCAGATAATGTGAAAAATAACAATGTAATATCTAGgtACTCACCTCCCGCTTCTAGTATCCTTGAAAATATATTGCTTCGAAACCGaattgacaacaacaataaCAACAATGAAAATCACCAAAGATCGCATTCAAATGCCACTCCTCCTCCTCATTCTCCCACCGAAATGGCTTACTCATACAAGAAAAGTCACAGATATACAGTACCTTGCAGCCCCGACTCAAGCTCCAATATCCAAGTGAATAATAACGGGCTCTCTCCAAATAGGCATTCCTGTACAAGTCCATCTTTACAGCCCGGTTTTAGTTTGAACGACACAATTGCCTTCCATGTTAATAACAATATAAATCAAAGTGGAAACTACTACGACGTATATCCCGCGTCGAATGGTATAATCCATAGTACCGTGGTTTCTTCTCCTAATCGCAGCAATTACTCGCCACCTTTGAATACGGGCTACACAACGAGTCACTCCCCAAATGGTCTGGTCATTCCAACAAGTCATATTGGAACTATCTCACACCACCTTCTACAGCCTTTAGCTCCGCTGCAGAATCCAATGGAATCGAGATCGCCGAATTCAAGATCTCCCGACCTGCTAAGTGAACCAATGAGTCCTGGTGGCACAACGAGAGGCTACAGATCTCTACCCTATCCGTTGAAGAAGAAAGACGGAAAAATGCATTACGAATGCAACGTATGCTGCAAAACTTTTGGACAGCTATCCAATCTGAAAGTTCATCTGAGGACACACAGTGGTGAAAGGCCATTTAAGTGCAACGTGTGTACGAAGAGTTTTACACAGCTAGCTCACTTGCAGAAGCATCACTTAGTACATACAGgtGAACGTCCACACGAATGCAGTATCTGCAAGAAACGATTTTCCTCAACGTCAAACCTTAAGACTCACTTGCGACTGCACAGTGGCCAAAAACCGTACGCTTGTGACTTCTGTCCAGCCAAATTCACACAGTTTGTTCATTTAAAACTCCACAAAAGATTGCACACAAACGAACGGCCTTATATTTGTCAGGAGTGTGGAAAGAACTACATCAGTGCGTCTGGACTGAGAACGCATTGGAAAACTACCAACTGCAGGCCGAATAACATTGAGGAAGAGTTGGGCGGGGGTGATACCTCGCCTCACGGATATTATACCGAATACGCTGGATCGGAAGGCAGTTTAGGCTCGGCTGAACTTCGAGACGCTCAGGAAGATCACAAAGAATTTGAGGTTCATTCGAGCCACCACCTGTCACCTCCGCACACTTTGAGTCACAGTGTGTTACAAACCGCCGCGTTAAGCAGGCATCAAATTAACGGAGGGTTAATTCAGAATACTATTCAGAACAGTATACATAATAGTATTCAGAACACCATTCAAAATACAATTCAGAATTCGGGCATACACGGTAAAGAAACCAGGCCCAGCGTGATCGAGTCCTCCCAGCCTCATATTATCGAGTGCACCTAG
Protein Sequence: MFVIIFPEGLKCLEQKLKLAKEDKMREEAREETAATSSSDDFKIGNIGEEEFEEHTTYIVPDLPAEHGTPNRAEATLPRNLVLKPVQALSDAQGVWSTGYIPRGTRFGPLVGEIYAKDAVPSSANRKYFWRIYKDNELYYYIDGSDTTKANWMRYVNPAYSSESQNLIACQYKMNIYFYTIRDILPNQELLVWYCKEFAERLNYPLTGEQMLQRIRQQVQQSSEAISVSTSDSPPKDPSYDHQLTPTGGSVRSDEGYHSNGYHDEAVFTPPEDSSDSDSENNYVLDFSKKANAKESTVIKPVAQEVQKNEYRKVKIKISKAYTNYKKGESDHETGKETPPPDTSVPEITTVLPARVITPPNGSVIVTESSHEVPIQIYEADNVKNNNVISRYSPPASSILENILLRNRIDNNNNNNENHQRSHSNATPPPHSPTEMAYSYKKSHRYTVPCSPDSSSNIQVNNNGLSPNRHSCTSPSLQPGFSLNDTIAFHVNNNINQSGNYYDVYPASNGIIHSTVVSSPNRSNYSPPLNTGYTTSHSPNGLVIPTSHIGTISHHLLQPLAPLQNPMESRSPNSRSPDLLSEPMSPGGTTRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGERPHECSICKKRFSSTSNLKTHLRLHSGQKPYACDFCPAKFTQFVHLKLHKRLHTNERPYICQECGKNYISASGLRTHWKTTNCRPNNIEEELGGGDTSPHGYYTEYAGSEGSLGSAELRDAQEDHKEFEVHSSHHLSPPHTLSHSVLQTAALSRHQINGGLIQNTIQNSIHNSIQNTIQNTIQNSGIHGKETRPSVIESSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00169954;
90% Identity: -
80% Identity: -