Opom029915.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxystoma pomonae
Gene Symbol
-
Assembly
GCA_963921995.1
Location
OY998170.1:7594280-7617266[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.8e-06 0.00054 21.5 1.6 1 23 186 208 186 208 0.99
2 18 0.11 16 7.4 1.0 1 23 286 310 286 310 0.86
3 18 0.023 3.3 9.6 0.8 1 23 348 372 348 372 0.96
4 18 0.1 15 7.6 8.8 1 23 381 403 381 403 0.99
5 18 1.5 2e+02 4.0 0.6 1 23 551 575 551 575 0.87
6 18 0.007 0.99 11.2 3.9 1 23 584 606 584 606 0.99
7 18 0.3 42 6.1 0.2 1 23 656 680 656 680 0.87
8 18 0.074 10 8.0 3.0 1 23 689 711 689 711 0.98
9 18 0.056 7.9 8.4 1.0 1 23 778 802 778 802 0.87
10 18 0.13 18 7.3 4.8 1 23 811 833 811 833 0.98
11 18 0.056 7.9 8.4 1.0 1 23 1203 1227 1203 1227 0.87
12 18 0.22 31 6.5 2.1 1 23 1236 1258 1236 1258 0.96
13 18 0.02 2.8 9.8 0.8 1 23 1401 1425 1401 1425 0.94
14 18 0.033 4.6 9.1 3.5 1 23 1434 1456 1434 1456 0.98
15 18 0.056 7.9 8.4 1.0 1 23 1537 1561 1537 1561 0.87
16 18 0.0043 0.61 11.9 3.8 1 23 1570 1592 1570 1592 0.98
17 18 0.28 40 6.2 0.4 1 23 1669 1693 1669 1693 0.80
18 18 0.0025 0.35 12.7 2.5 1 23 1702 1724 1702 1724 0.98

Sequence Information

Coding Sequence
ATGGAAACTTTAAGTCGGGTCAAAAATCCTAGTACCCAAGGGAAAGATCTTGAAGTTAAAGAGTCAAATATTTTAACTGAACATTGTGACAAGGATATGGTGAAGACAGAAGAAGCTTTGGATATTAgcattattcaaGAAGaactaattaaattaaatgattATTCTAAAGACCAAAATAATCAAGAAACAGAGGTAAAACTGGAAACCATTATTGTCAAAACAGAATTATGTGACAATGATTTTGATAATCCAGATATAACAGATAGAAGTAATGCGTCTGTTTTGACAGGCCATAATTCTGATAGCCAGATTGCTGAAATTAAGCAAGAAAACCATAAAGAAGATATTATCAATGAAGAAGTTCCAAGTGCACCTTATAACAATGATGCGTCTCATTTAACTTTCCATAATTCTGATAGTTCTAGCCACATTGATGAGCAACAAAACTGTAGAAAACGTATTAGAAAAAACATAGaaagtattaaaattataagTAGCGAAAGGCTGATTACACCTGATTGTAATAGCTGTTTTAAAAAAGATCTGAATTGGTATCAATGTCCTGTGTGCCCTTATCACACTAAACGGAAATCTGATCTCACCAGGCATTTGGCCACACACCAAAGTTTAGATATTGGCCAAACCGATGATAACGAGCAACAAAACCATAAACATATTGAAATCATAAAAGAAATTCCACCTACACTTGATTTAAGCGATACGTCTGACGTGACATTCTGCAAATCCGATATTCGAAACCAGAAAAAAGATATCGAAAAAAACATAGAAATAAGTAGGGAAGGTTCAATTACAATTGATTTTAATGACTGTTTCAACAAAGAACTGAATGCGTACCAATGTCCTGTTTGCCCATATTATACCAAACGGAAGATGAAATCTGATCTGAAAACTCACTTACTCAGTCACTACCGTAGAAACGGTATTAAAGTAAACATAGATTccctaaaattaattataagCGAAGAAGTTTCAAGtagaattaattttaatgacTGTTTTAATAAAGAACTGAATGGGTACCAATGTCCTGTTTGCCCATTTTATACTAAACGGAAGAATAAATCTGATCTAAGGACTCACTTATTAATACATCAAGATCCAGATGCTGTCAGCAAATACAAATGCACGATTTGTCATTTCAAAACCAAGTACAgagattgttttaaaaagcatttgGCCACACACCAAAGTTCAGATGCTAGtttatctgAAAATGAAAACGCCCAAGAACAAAAACTGACCCCTGAGGAATCAGCTAGTTTACTAACGGATATGTCTGGCAATAATCTTGTTTCACATCCAAAAATAGATAACGACGACTCCTGGTTAGTTAATTTTGATGGATTTAgccaaattaataaaattgagcaacaaaaccataaaaaagacATTAAAGAGGACAATAGAATTAAAATTATAAGGATAAAAGTTCCAAGTGCAGTCGATAGAAGCGACGCATCTTTTGTGACTTTTGACAACTCCGATAATTTTAGACAAATGGGTGAAATTAAGCAACAAAACCGTAGAAAACGCATTAGAGAAAACATAGAAAGTATTGATATTATAAGCGGAGAAGGCTCAATTACAGTAGTATTAAATGACTgttttaaagaagaactgaaTGGGTACCAATGTCCTGCTTGCCCATTTTACACTAAACGTAAGATGAAATCTGATCTAAAAACTCACTTATTAATACATCAAGATCCAGATGCTGCATGCAAATACAAATGCTCATTTTGCAAGTTTAAAACCAAGTACAGGGATGGTCTTAGAAGGCATTTGGACACACATCAAAGTTCAGATATcagtcAAATTGATGAAAGTGAGCTACGAAATTATAGAAAAGACATTAAAGAATATAATAGTATTGAAATTATGAGTAGAGAAGGCCCAGTCACAGTTGATGTTGGTaactgttttaaaaaagaagtgaACGGCTACCAATGTCCTGTTTGCCCATTTTATACTAAACGGAAGATGAAAGCTGATCTCCGGGCTCACTTACTAGTACATCAAGATCCAGATGCTGTAAGCAAATATAAATGCACTGTTTGTAATTTCAAAACCAAGTGGAGATTTAGTCTTAGAAAGCATTTGATCACACACCAAAGTTCAGATAttagttCATCTGAAGATGAAAATGCACAAAAGCAAGAATGGGGCCCTGAGGAATTAGATCAAATGGATGAGCAACAAAATCGtagaaaacgttttaaaaaaaacatggacaattttaatgttataagtAGAGAAGGTCCAATTACAGTTGATTTAAATAACTgttttaaagaagaactgaaTGGGTATCAATGTCCTGTTTGCCCATATTATACCAAACGGAAGATGAAATCTGATTTAAGGACTCACTTATTAACACATCAAGATCCAGACGCTGGTAGCAAGTACAAATGCAGATTTTGTAATTTCCAAACCAAGTACAGGGATGGTCTTAGAAGGCATTTTTCCACACACCAAAGCTCAGATAttagCTTATCTGAAAATGAAAACACACAAGAACAAAAATTGGACCCTGAGGAACCAGCTATTTTAACAACGGATATGTCTGGAATTAATTTTGTTTCACATCCAAAAATCGATAATGAGGAGTCGTTAGTTAATTTTCATGGTTTTAGCCAAATTAATGAAACTGAGCAACAAAACCCTGAAAAAGATATTAAAGAAAACATAGATAAAATCATAAGCAAAGAAGTTCCAACTTTCCACAATTCAGATATTTTTAGACAAATAGATGAGCAACAAAACCATGAAATAGACATTAAAGAAAACATAGatagaattaaaattttaaatgaagacGTTCCAAGTACAGTCGATAGAAGCGATGCTTCTGTTGTGACTTTTGACAACTCAGATATTTTTAGCCAAATAGATGAGCAACAAAACCATGAAACAGACAGCGATGCATCTGGTGTGAATTTCCACAATTCAGATATTTTTAGACAAATAGATGAGCAACAAAACCATGAAACAGACATTCAAGAAAACATagatagaattaaatttaaaaacgaaGATGTTCCAGGTGCAGTCGATAGAAACGATGCTTCTTTTGTAACTTTCGACAACTCAGATATTTTTAGTCAAATAGATGAGCAACAAAACCGTGGAACAGACATTCAAGAAAGTATAGatagaattaaaattaaaaacgaagaTTTTTCAGGTGCAGTCGGTAGAAGCGATGCTTCTGTTGTAACTTTCGACAACTCAGATATTTTTAGTCAAATAGATGAGCAACAAAACCATGGAACAGACATTCAAGAAAATATAGatagaattaaaattaaaaacgaagaTGTTCCAGATATGTCTGACATGCATGTTGTTTCACATCCAAAAAACGATAATGAGGAGGCGTTAGTTTATATCGAAATTAATGAAACTGAGCAGCAAAACTATGAAAAAggcataaaagaaaaaatagataaaattatCAGTAAAGAGTTTTCAAGTAACCGTAGAAAACGTGTTAGAAAAAAAGATAGTTTCAAAGTTATAGGTAGAGGAGGTCCAATTACAGTTGATTTAAGTAACTgttttaaagaagaactgaaTGTGTACCAATGTCCTGTTTGCCCATATTATACTAAACGAAAGATGAAATCGGATCTAAGGACTCACTTATTAACACATCAAGATCCAAACGTTATTACCAAATTTAAATGCAGATTTTGCAATTTCCAAACCAAGTACAGGGATGTTCTTAGAAGACATCTGGCCGCACACCCATGTTCAGATAtgagctcatCTGAAAACGAAAACTCGGGCCCCGAGGAATCAGATATTTTAATAACGGATATGTCTGACAATAATATTGTTTTACATACAAAAATCCTTAACGAGGAGTCCttaattaattttgatggtTCGTGTCAAATTAATGAAACTGAGCaacaaaaccataaaaaagatATTAAAGAGAACATAGGTAGTACTAAAATTATAAGTAATGATTTACCAAGTACAGTCCATAAAATCGATGCGTCTAGTGTGAGTTTCCACAACTCCGATAGTTTTGGCCAAATCGGTAAAATTAAGCAACAAAAACGTAGAAAACGTGTTAAAGAAAACATAGAAAGTATTAATATTGTAAGCGGAGAAGGTTCAATTACACTGGATTTTGATGACTGTTTTAAGAAAGAACTCAATGGGTACCAATGTCCTGTTTGTCCCTACTATACTAAGCGGAAGACCAAATCTGATCTGAGGACTCACTTATTAATACATCAAGATCAGGAAACTGTTAGCAAATATAAGTGCGAATTTTGCAATTTCAAAACCAAGTACAAAGATAGTATTAAAAAGCATTTGGTGACACACCTAAGTTTAGATataagttcatcTGAAGATGAAAAGAGACAAGAACCCGAATTGGGCCCTGAGGAACCAGCTGTTTTAATAACGGATATGTCTGGCATGAATGTTGTTTCACATCCAAAAACCGATAATGAGGAGTCATTAGATAATTTTGACGGTTTTAGCCAAATTAATGAAACTGAGCAACAAAACCGTGAAAAAGACATTACAGAAAACATAGATGAAATTATAAaactgAATGGATACCAATGTCCTGTTTGCCCATATTATACCAAGCGGAAGATGAAATCTGATCTGAGGACTCACTTATTAACCCATCAAGATCCAAATGCCGTTAGCAAATTTAAATGCACATCTTGTAATTTCAAAACCAAGTACAGAGATAGTCTTAAAAAGCATTTGGCCACACACCAATGTCCAGATATAAGtctatcTGACAACATCCAAGAACAAGAATTGGATCCTGAGGATCCAGCCGTTTTTATAACGAATACGTCCGATTCGTTGGTTAATTTTCACAATTTCGATGGTTTCAGCCAAGTTGTCGATTTTGAccgacaaaatcaaattttaaccGACGTCGAAAAATATGTCGAAAACCTCGATTTCgatttgttgtttaaaaaagacCTGAACGGTTACCAGTGTCCCGTTTGCCCGTATTATACGAAACGGAAGATGAAAGGCGACCTGCGGACTCACTTGCTGGTTCATCAAGATCCCAAGACGGCTAGCAAATATGAATGCGCGCACTGCCCTTTTAAAACGAAATATAAAGATGGCCTTAAAAGGCATGTGACTACACACGAAAAATTATGTACCGGGTAA
Protein Sequence
METLSRVKNPSTQGKDLEVKESNILTEHCDKDMVKTEEALDISIIQEELIKLNDYSKDQNNQETEVKLETIIVKTELCDNDFDNPDITDRSNASVLTGHNSDSQIAEIKQENHKEDIINEEVPSAPYNNDASHLTFHNSDSSSHIDEQQNCRKRIRKNIESIKIISSERLITPDCNSCFKKDLNWYQCPVCPYHTKRKSDLTRHLATHQSLDIGQTDDNEQQNHKHIEIIKEIPPTLDLSDTSDVTFCKSDIRNQKKDIEKNIEISREGSITIDFNDCFNKELNAYQCPVCPYYTKRKMKSDLKTHLLSHYRRNGIKVNIDSLKLIISEEVSSRINFNDCFNKELNGYQCPVCPFYTKRKNKSDLRTHLLIHQDPDAVSKYKCTICHFKTKYRDCFKKHLATHQSSDASLSENENAQEQKLTPEESASLLTDMSGNNLVSHPKIDNDDSWLVNFDGFSQINKIEQQNHKKDIKEDNRIKIIRIKVPSAVDRSDASFVTFDNSDNFRQMGEIKQQNRRKRIRENIESIDIISGEGSITVVLNDCFKEELNGYQCPACPFYTKRKMKSDLKTHLLIHQDPDAACKYKCSFCKFKTKYRDGLRRHLDTHQSSDISQIDESELRNYRKDIKEYNSIEIMSREGPVTVDVGNCFKKEVNGYQCPVCPFYTKRKMKADLRAHLLVHQDPDAVSKYKCTVCNFKTKWRFSLRKHLITHQSSDISSSEDENAQKQEWGPEELDQMDEQQNRRKRFKKNMDNFNVISREGPITVDLNNCFKEELNGYQCPVCPYYTKRKMKSDLRTHLLTHQDPDAGSKYKCRFCNFQTKYRDGLRRHFSTHQSSDISLSENENTQEQKLDPEEPAILTTDMSGINFVSHPKIDNEESLVNFHGFSQINETEQQNPEKDIKENIDKIISKEVPTFHNSDIFRQIDEQQNHEIDIKENIDRIKILNEDVPSTVDRSDASVVTFDNSDIFSQIDEQQNHETDSDASGVNFHNSDIFRQIDEQQNHETDIQENIDRIKFKNEDVPGAVDRNDASFVTFDNSDIFSQIDEQQNRGTDIQESIDRIKIKNEDFSGAVGRSDASVVTFDNSDIFSQIDEQQNHGTDIQENIDRIKIKNEDVPDMSDMHVVSHPKNDNEEALVYIEINETEQQNYEKGIKEKIDKIISKEFSSNRRKRVRKKDSFKVIGRGGPITVDLSNCFKEELNVYQCPVCPYYTKRKMKSDLRTHLLTHQDPNVITKFKCRFCNFQTKYRDVLRRHLAAHPCSDMSSSENENSGPEESDILITDMSDNNIVLHTKILNEESLINFDGSCQINETEQQNHKKDIKENIGSTKIISNDLPSTVHKIDASSVSFHNSDSFGQIGKIKQQKRRKRVKENIESINIVSGEGSITLDFDDCFKKELNGYQCPVCPYYTKRKTKSDLRTHLLIHQDQETVSKYKCEFCNFKTKYKDSIKKHLVTHLSLDISSSEDEKRQEPELGPEEPAVLITDMSGMNVVSHPKTDNEESLDNFDGFSQINETEQQNREKDITENIDEIIKLNGYQCPVCPYYTKRKMKSDLRTHLLTHQDPNAVSKFKCTSCNFKTKYRDSLKKHLATHQCPDISLSDNIQEQELDPEDPAVFITNTSDSLVNFHNFDGFSQVVDFDRQNQILTDVEKYVENLDFDLLFKKDLNGYQCPVCPYYTKRKMKGDLRTHLLVHQDPKTASKYECAHCPFKTKYKDGLKRHVTTHEKLCTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-