Opom030124.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:15308284-15310737[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00038 0.054 15.2 0.9 1 23 157 180 157 180 0.97 2 12 0.13 18 7.3 1.9 2 23 202 223 201 223 0.96 3 12 0.039 5.5 8.9 3.6 1 23 232 255 232 255 0.93 4 12 0.0003 0.043 15.5 2.5 1 23 264 286 264 286 0.95 5 12 5e-05 0.0071 18.0 1.3 1 23 296 318 296 318 0.98 6 12 0.0046 0.64 11.8 0.7 1 23 327 349 327 349 0.97 7 12 0.014 1.9 10.3 5.0 1 23 358 382 358 382 0.90 8 12 0.0033 0.46 12.3 1.9 1 23 394 416 394 416 0.99 9 12 0.0011 0.15 13.8 1.6 2 23 428 449 427 449 0.96 10 12 0.035 4.9 9.1 0.7 1 23 458 482 458 482 0.98 11 12 0.024 3.3 9.6 2.0 1 23 492 514 492 514 0.97 12 12 0.025 3.5 9.5 3.5 1 23 523 546 523 546 0.96
Sequence Information
- Coding Sequence
- ATGAACTCTTCAGCATATGAAAACAAATTCAAAGAAGATTCAAACTTTGGAGACCTCTTGTCCATGGAAGAAGAGCTATGTCTTCGTAATATTAAGGCAGGTGGAGAGGGCGTCGATCGTTTACAAGATAATATTAAAGATGAGATGAAAGAAGAGGCGCTAATTGCTATGGATGTAAAAACTCGTCAAAGAGTGGGTATTACTACAGAAGACCCAGAAGCAAACTCTACTGAATTAAACAATCAAAACTTTGAAAGTCATCTAGAAAAAAACTACACATCTAGCACCGAAAAAGACCACATTGAAgacataaaaaatctttttaaagaaaatgccttagattttgaaaaacaaaaattttatcaacaaatttttaatgatattttggaaaaaactaaCCAGAAGAAATTGGAAGATTTACAAAAACAGTATTTAGAGCATTTACATCAAATTTCTGATGTAGAAACTTTCAAATGCTCATCTTGTGACTACCAAACCATAAACAAAACCAATCTTAAAAGTCACTTGTTAATAATTCATAAAAGCGAATTAGACTTTAAAGTTTTTCGTTGCTTGACTTGTTTGGATAATATTAAGACACTAAAATGTGAATCTTGTGATTACACCACCGAAGCAAAAGAGTGCTTGAGAGTGCACCAATTTTCTCATAAAGATCCTAATGAAATCGAATGGTTTTCATGCACAGAATGCCAATTTAAAACCAAGTTCAAGAGAAATTTACACAACCATGTCCTCGCCTTGCACAAACCAGAACAGattgttaaaaaattcttgTGCGAAATCTGCAGTCACTCATTCAGCACCCGCGCTAAACTAACCAATCATTCATTAACTCACAAAAGTATAAACGAAGTGGCAGAAGTCTTTCAGTGTGACCAGTGTCCTTACAAAACTAAGAAGCGATACAACCTTAAAATACACATGGTAGTTCATAATAGCGCCAGTGAGTTAAAGACGTTCATTTGCGATACGTGCGGTTTTCAAACTAAGCGGAAGTGGAATTACGATAGCCATTTGTTAATACACAAAGATGCCTCAGAAGTGGACTTGCATTGTTGTGAAGTTTGTGGATATACAACCAAATTTAAAGAACGTCTTACACGCCATTTAAAAAGGGGAACACATCAAGCTGGCAGAAATCAGTTTAAATCTGCAAACTATAGTTGTTCTGTGTGTAACTTCGAAACAGTAAACAGAAAAACTTACTTCAATCACATACAAACCCACGACAATCCAGACGAGATCGCGAAAGGCTGCGTCAGTTGTCATGTTTGCGGGTTTAGAACCAACGACAAACGGAATCTAGCCCAGCACTCGTTAACCCACAAAAGCATAGACGAAGTGCGAATGTTTAAGTGTCCCGAACTAAACTGCGAGTTTCAAACGAAATACAGGGCCAGTTTATACACTCACATTAAAGGTCACAAAGGCGCGCCAGCTCAAACTACATTCTATAAGTGTGATGTTTGCGGACTTCAAAGTAGGAGGAAGTACGACCATAATATGCACTTGATAACGCATAAGAGCGCGAGCGAAGTGGAGGTTTTTAATTGCACAATTTGCAGTTATCAGACAAAATTTAAGGCTTACCTAAAGGCGCACTTTAAGAAGAGACACGGTATTGTGACTGCTACACGGGGTAGAGTAAAATAA
- Protein Sequence
- MNSSAYENKFKEDSNFGDLLSMEEELCLRNIKAGGEGVDRLQDNIKDEMKEEALIAMDVKTRQRVGITTEDPEANSTELNNQNFESHLEKNYTSSTEKDHIEDIKNLFKENALDFEKQKFYQQIFNDILEKTNQKKLEDLQKQYLEHLHQISDVETFKCSSCDYQTINKTNLKSHLLIIHKSELDFKVFRCLTCLDNIKTLKCESCDYTTEAKECLRVHQFSHKDPNEIEWFSCTECQFKTKFKRNLHNHVLALHKPEQIVKKFLCEICSHSFSTRAKLTNHSLTHKSINEVAEVFQCDQCPYKTKKRYNLKIHMVVHNSASELKTFICDTCGFQTKRKWNYDSHLLIHKDASEVDLHCCEVCGYTTKFKERLTRHLKRGTHQAGRNQFKSANYSCSVCNFETVNRKTYFNHIQTHDNPDEIAKGCVSCHVCGFRTNDKRNLAQHSLTHKSIDEVRMFKCPELNCEFQTKYRASLYTHIKGHKGAPAQTTFYKCDVCGLQSRRKYDHNMHLITHKSASEVEVFNCTICSYQTKFKAYLKAHFKKRHGIVTATRGRVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -