Opom010184.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963921995.1
- Location
- OY998165.1:4907507-4926316[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.5 1.2e+03 1.5 0.1 3 23 8 28 7 28 0.90 2 12 0.00022 0.031 16.0 0.3 2 23 724 746 723 746 0.90 3 12 0.52 73 5.4 0.7 2 23 754 775 753 775 0.96 4 12 8.7e-06 0.0012 20.4 1.7 2 23 778 799 777 799 0.97 5 12 0.00012 0.017 16.8 0.8 1 23 805 827 805 827 0.98 6 12 0.0032 0.44 12.3 6.7 1 23 833 855 833 856 0.96 7 12 0.34 47 6.0 1.1 6 23 870 887 868 887 0.96 8 12 0.00022 0.031 16.0 5.2 2 23 893 915 892 915 0.96 9 12 5.2 7.4e+02 2.2 0.2 3 23 928 947 927 947 0.91 10 12 0.00026 0.037 15.7 0.9 1 20 953 972 953 975 0.91 11 12 0.00015 0.021 16.5 0.7 1 23 983 1005 983 1005 0.99 12 12 0.11 15 7.5 0.1 1 13 1011 1023 1011 1025 0.91
Sequence Information
- Coding Sequence
- ATGGAGTCTCTCAATGCAATGTGCCCAGTGTGCACTCTCTATTTAAGACCAGGCATTACACTAAAGCAGCATTTGACCAGTCACCCCAAGCAGAAAGTAATTGAAGCATTGGTCAAACTTGCAGAAGgAGGTGATGAACCTGAAAAAGCTCACAGCTCTCAAAATGATGGTCGACAAGTGCCCAGCACATCAGCTAGTGTTCCTCATAACCCCCCTACTTCTCAAATACCTCAATTTAATCCATTGCAAATGGGTATGGGCTCCAGTATGGGTATGGGTTCCAGTATGGGTATGAATGCTCCACAGAATATGGCACATTTCCCAGGAAACTTCTTCATCTACCAACAAAGCATGAGCACCACCTCACCTCACCAACCGAACGTGCTTAACATCAACCAGCAACCTTATCTAGTCCCGGCGCCAGCGGCGGCGCACTTCTTCAACCCGGCACAACAGCAACAAATGATGATGCCCTACATCTATCAGCAGCAGCAAGTCATTATGGCAGGCAACACTATGCACCCCCATCTCGGTAGAGCATTGCCTCCGTTTGAGTTGCCTAGTTGTCCCCCacagTCTCAGGTAAACGAAGATGCATATGACTCGTCTCAAATCCACCCCGACCCCGTTGACATCCTGGAAGATATCAAACCAAAGCTTAAACCGCAGAGAAATTCACAAGCAAAAGAAATTCATTTGAGCCACGagcaagaagaagaagaagaggaAATTCAAAGCATTTCAGACAGTGTTAGCATTAAGTCTGTACCTGCTGTGCGGCAAAAAAGTCGCTCAAGGTCACCCGAATCGGTGGTTCCTATGGAACAGTCGGAGGAAGAGGTGGATGAGGTGGATAGCAGTGAAGGTTGTCAGCCTGCAGCAGCCGACGTCAAACATCACAAAGTCGAAATACTGGCGACTGACATCGCTAACAATGAGGAAGCTGAACTGgttgaaaaaaatcattctCTGGCTGGTGAGGACAGTTTGGACCACAGTTTTCATGACGACGACTATGAAAACACCTCGGAGGTAAATCAAAGCGTCGACCACGAGGAGTACGTCGACATTACCCCGCTCTCTCCCGGCAACTCGGACTGGGGCTTGAACGAGGACATCAATCAGGAGTTGGACAAGGCGTGTCAGACTCAAACGCAGACCGCGGTACACGTGTCGCCCAGATTAATACATTCGGTCCACGAGAGCGTTCACGAAGAAGAGGACAACTTGGAGCTTTCGGAACCGCCTGCGGACGCGCCCGACTATTTCTACATCAGCGAAGAGTACCACAACAGTTCAGAATCCGCAGTGGGGATTTCTACTCATGAAGATAGTATCATTCACAACAACTACGAACAATCGGATCCCATCTACACCTCCGCGAATATCCTTCACGGAGGTGAACCGGTCGATTTCGTGACCATGGAGGACTTAGACGGCATGCAAGTTATTATCGGTGACTTCCACACCGGTCCGGCGATTTCTCAGGTGGAGGACTTCGAACACATGGATCCGGACAGGCCTAGGGTTCTGATGACAATCGGCGAAATTTCCCATGGCAAAAGCCAACAGTCCTGTCCTCCCGATCTCGAGGACTACTCCGTTCCTAACCTCAATATGCAGTCCGACGAGAAAATGCCTGCAAGagGAGAATTATCGGGCCAGGAAAGCTTGGGCAGCGCGAGCAACATCTCATGGCACCATGCCACCTATCAGCATCAGCAAGAAGTGACGGTGGTCGACAGCTACGATCACGTGTGGGACGACAGCAACGGCGCGCAGGCGAACCATTTGGGCATCGACGGCGAGAGCGACAATCACACCGACCACATTATCGACATGAAGTTCAAACCTGTCACCGCGGAAGGGGCTGTGCCGGAGGAGCTACGAAAAACCGCCGAAGAAATCCCTGAAGATGGCGAGGACGAGAAACCCAAACTGATCGGCCTCGACATCGACCGGAAGAAGACGAAAAAACTGGTGATCAAGCCTAAGAAACCAAAGAAGCAAACCAATACGTTTATTGATGTGTTCACCAAGGTCAAAGTTGAAAGGTGCGAGACCGAAGTGACAGTGGGCCGAGTTGCAATTTTACCAGGTAATGGACTGAATGCGGAAAACAGGGATCCCAGGCTGGACGCTAAACCTAGCGGGAGCGTGCCAAAAATATCGTGTCAAATGTGCAATGAAACATTCAGGACGAAAAAGTCGTTGAGGATACATGCGATCGAAGCGCACAACGTCTTCGACACGAAACTATCCTGTGCAATATGTCGGCAGACGTTCCTTAACGACTACAAGTTCACCGAGCATTTGAAAGTGCATCCGTTGGAGTGCAAGATGTGCGGGAAGTTGTTTTACAGACGACAGAACCTATCGCTTCACATGCGACGTCACTTGGGCATAAAGCCGTTCCAGTGCGATGTCTGCGACAAATCGTTCATAACCAAGCAGAAAATGGACGAGCATAGGAATATACATTCGGGCAACAGCCCCTTCAAGTGTCACTTGTGCGAAGACTCGTTCAAGCGGTTCTCCAATCTAGTGCAGCATAGGAATAGGCATCATTTTCAgattaagaaaaaactaaaagACTATGTTTGTTTCTGCGGCGAGGTGTtccactctaagaaaaaaatggcGTGGCATCAGGAAATTCACGACCCAAAGCCTAAATCATGTCCTCATTGTAGCGAAAAGTTCATTCATCAAGCCAGTTTAAGTAGACATATGAGACATGCTCATAACGTTGAGCACAATACTCAGaagGCGATCGCAATTTGTCCGATATGCAAAGGCACGTTCCTGAAAACCTCGATAGACGCCCACATCAAGAACCACAGCGGTCAAAAACCGTTCGCCTGTCTGATCTGTAACAAAGAATTTACCACCAAGTGGAACTTGAAACTGCACAAGTGGACTCACTCGTCGCGCACTCAAAAACCGTTCAAGTGCGAACAGTGCAAGAGCGCGTTCATCCGGAATACGGACTATATCGCGCACATGAACTCGCATAAGAACATCCGTCCGTACACGTGTAACTACTGCGGAGCGCAGTTTATTAGaaaggctttgAAGTGCTGTTGTTCCGGAATTGAGCGCCAGTGCTGCACCCCTTTTCTTTCAACAAAGCAGGGCTCGGGCTCTAAGAACACAGATTTCGGTCCTGCCTTAGCAAGagtcggctttttcgtttccttcAATTCCTATGTGGCCCGGGACCCATACAAGAGTGATTTTGTTGGTTCCACAGATCCTTAG
- Protein Sequence
- MESLNAMCPVCTLYLRPGITLKQHLTSHPKQKVIEALVKLAEGGDEPEKAHSSQNDGRQVPSTSASVPHNPPTSQIPQFNPLQMGMGSSMGMGSSMGMNAPQNMAHFPGNFFIYQQSMSTTSPHQPNVLNINQQPYLVPAPAAAHFFNPAQQQQMMMPYIYQQQQVIMAGNTMHPHLGRALPPFELPSCPPQSQVNEDAYDSSQIHPDPVDILEDIKPKLKPQRNSQAKEIHLSHEQEEEEEEIQSISDSVSIKSVPAVRQKSRSRSPESVVPMEQSEEEVDEVDSSEGCQPAAADVKHHKVEILATDIANNEEAELVEKNHSLAGEDSLDHSFHDDDYENTSEVNQSVDHEEYVDITPLSPGNSDWGLNEDINQELDKACQTQTQTAVHVSPRLIHSVHESVHEEEDNLELSEPPADAPDYFYISEEYHNSSESAVGISTHEDSIIHNNYEQSDPIYTSANILHGGEPVDFVTMEDLDGMQVIIGDFHTGPAISQVEDFEHMDPDRPRVLMTIGEISHGKSQQSCPPDLEDYSVPNLNMQSDEKMPARGELSGQESLGSASNISWHHATYQHQQEVTVVDSYDHVWDDSNGAQANHLGIDGESDNHTDHIIDMKFKPVTAEGAVPEELRKTAEEIPEDGEDEKPKLIGLDIDRKKTKKLVIKPKKPKKQTNTFIDVFTKVKVERCETEVTVGRVAILPGNGLNAENRDPRLDAKPSGSVPKISCQMCNETFRTKKSLRIHAIEAHNVFDTKLSCAICRQTFLNDYKFTEHLKVHPLECKMCGKLFYRRQNLSLHMRRHLGIKPFQCDVCDKSFITKQKMDEHRNIHSGNSPFKCHLCEDSFKRFSNLVQHRNRHHFQIKKKLKDYVCFCGEVFHSKKKMAWHQEIHDPKPKSCPHCSEKFIHQASLSRHMRHAHNVEHNTQKAIAICPICKGTFLKTSIDAHIKNHSGQKPFACLICNKEFTTKWNLKLHKWTHSSRTQKPFKCEQCKSAFIRNTDYIAHMNSHKNIRPYTCNYCGAQFIRKALKCCCSGIERQCCTPFLSTKQGSGSKNTDFGPALARVGFFVSFNSYVARDPYKSDFVGSTDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -