Opom011709.2
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- prdm10
- Assembly
- GCA_963921995.1
- Location
- OY998165.1:59611546-59615328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0024 0.33 12.7 2.2 2 21 396 415 395 416 0.95 2 12 0.006 0.84 11.5 1.6 1 23 452 475 452 475 0.95 3 12 0.11 16 7.5 1.0 1 23 567 589 567 589 0.89 4 12 0.00052 0.073 14.8 5.3 1 21 593 613 593 614 0.94 5 12 0.00029 0.041 15.6 0.6 2 23 620 642 619 642 0.94 6 12 0.46 65 5.5 7.5 1 19 646 664 646 667 0.94 7 12 0.00045 0.063 15.0 5.4 1 23 677 699 677 699 0.99 8 12 1.4e-05 0.002 19.7 0.1 2 23 710 732 709 732 0.95 9 12 0.00055 0.077 14.7 0.4 1 23 737 760 737 760 0.94 10 12 0.00028 0.039 15.7 2.7 2 23 768 790 767 790 0.97 11 12 0.00025 0.035 15.8 0.5 2 23 814 836 813 836 0.94 12 12 0.0005 0.07 14.9 0.7 1 23 872 895 872 895 0.97
Sequence Information
- Coding Sequence
- ATGTCGCGATTCTTCAGGAACATCACTTATGATCAAGGCAGCCATCAATCCGTCATTATATCTAGAAGGGAACAAataattCCTATTAATATCGAAGTTGTAAATGCTTCCGAAGCAACTTTAAATCCTTTAATTGAAGATCCCGAGAAAATTGTACATAAGTCGGTGGGTTCCACGGAAAAGtttgaatttgaaaattctGATTTGTTACCACTTACCAATAACTCATTAGAAAGGCTAACACTATGCTCTTTAGAAGCAGCAAAACTAGAAGAAAGTCTTCAAGTTATACAACCACAAGTAGCGGCAGCAAAACTACAAGAATGTCTTCAAGGTATACAACCACAAGTAGCGATTTTAAATGCTTCAAATTCACTTACATCCTCGACGTCAGCCCCAGTGTTATCCGAAGTCAAGTTGAACCTAAAAAGAAAATCGAGAGCTGACAAAATCTTCAAAGATAAAAGAGATTTTGTTTCAAATTCCCATATTAAAGAAAGAAGTTCTGTTCCCTTAGAAGAATGCTGTATTTGTGGAGATACAGGACATTCTGCTAAAAGCTGCTCCTATGTACCTTTAACAAGTCATaTTGCAGATAAAGCAGTTCCTACTCGAGCAAGAGCATCTCTACCAGattctttagaattaaaaaagttaGCAGATAATACCGATAGTGTCTATGTCAAGCAGTTCATTTCAGCGGGTACAGAATTTGGCCCATTTCATGCTGAAAAGCAGTCAACTTTAAACCCTTTAATACATTttcctattaaaattttttcagaagataaaattttatattatttagatACGGTTGATGAAGATAAATGTAATTGGATGATATTTGTGAATCCGGCAAACTATGTAGAAGAACAAAATTTGATCTGTTACCAGAAAAATCTGGACATTTATTTTGCTACAGTTAAAGACATTAACCCAGGCGAATCCTTGAAAATATGGTATGCTCCTTTCTATGCATTAAAAATGGGCAAAGAACTTTTAGGTTTTGAGAGTTtagcaaaacaacaaaaacaagaaaCCGAACTATTAAACGAGCTtgttaaaaaacatcaaaacgtTGTTCCTCGAAGCACATGGAattgtaaattttgttatagATTAGAAAATAGTATTTCATCTTTTGCTAGTCATTTATTAGAGCACTATCAACACATGAGACAAAAACGGTGTGAGACttgtaacaaaaaatttaaggataatacaaaatatttaaatcatttAAGATATTCACAGtgttctaaaaataaagatatcaGTAAACAAAGTACGTTTTGCATAAACCAAattgaaaaacccaaaaaagacaaatttacTAAGATGGATAATCCTGTCTATACTTGTTATGTATgtgataaaatattttccaagaAAACTGTTTTAGTTGGTCACCTAGCTAAATGCCATGGGTTAATAAtgattgaaaataaaaaaaataaagaatttaaaaatgattcaaTCGGAGGACCATTACTACAATTTGATCCCGGACCAGAGATTTTGGATCAACCAAAtttaattcttgaaaaatctAACTTAAGTACCAACATCTTGGACATAGGTGAAAATTATAATGTTGGAAACGAAAATTTGATTTTAAGTGTTGATCTAATGTTAAATCAGAATGCGGATTGTAACGTAACTAGTAAACTTACCACTCCGCAAGATACTGAAGAACTTCACACCTGTGATATTTGCTTGAAAAAATTTAGGACATTTAGAGCAATTTCAGAGCATTTAGTTGCTCATACTGGTAGATATTTCTGTAATGACTGTAAAAAAGTGTTCACAAGAAAAGAATCCTTAAGTTCCCACAGATGCCACAGACAATATGTTCTTAAATGTAAAACTTGCGGGTTAATTTTTTATCAGGCAAAGTATCTTAAACAGCATATTGAATTAAGGcacaaaaacaaatttcggTGTAAAAAGTGTcttaaatgttttattactcATCGTAAATTAGAAGAACACAATTGCTCAGAGATTccaacagaaaataaaataaaatttacatgtGCGCACTGTGCTAAATATTTCTTTACAGAAAAATACCTAAGGCGTCATATGAAAACCCATATAAAAGATACTAATTCCAAGGATTTAACTTCTTGTCCTATATGTGGACAAATATTTGTAAGTCAAGAAGCTTACCGACGACATTTAAGGCTTCAACATAAAGAGGCCTCATTTGACTGCGATATTTGCTATAAAAAGTTTACAAGAAGGGATACTGTGATAGAACATTTAATGGAACTTCACGGAATAGGATCTGAACGAAGTCAATGTGatatatgttttaaattttattcgtcgaaaaaaaaattgactaagCACGTCAAAAAAGTTCATAATAAATCAGATAGCAAACATTTAAAACTTCAGAACAAAATTCTAAATCGTAAAATAGATAACGGTCTTATTTGTCCcatatgtaagaaaaaaattaaacttaaaagtTCATTACGTAGGCACATTAAAGATATCCATAGCTTAGATATAActgtaaaaacaaataaaagcaaaCCAAATGATTCGACACCTAAAAGATTTTATACACGTCCAGAAAACgaatttatcaaaaaagatGAGGGATATGCTTGTCCATTTTGCCCTACTGTTACTAAGCTGCGAAATTCTTTAAGAAGACATATTAGAAACAAACATCCACAACAAAAACTTGTAAATTCCAAAGAAACAATAGGACAAGCTAATGACACAACTGATAAAATAAACGCAGAACTTGATGAAATGATTGCAGATGATctatttaaagatttaaaagaaTCCATTGATGATCTAGATTTTACAACAGAAGTAGCACATACTATGGACAATCTAATTGAAAGTAGTGAAATTATAGATGcccttttaaaagaaaaaactgcaaatttggATACTAGTGCTTTTAATCTATCAGATGATATTTCTATAATTCCCGTAAATTGTAAAAAGTTCACCCAAAAAGATGTATTTTTATCCATGCCAgatttataa
- Protein Sequence
- MSRFFRNITYDQGSHQSVIISRREQIIPINIEVVNASEATLNPLIEDPEKIVHKSVGSTEKFEFENSDLLPLTNNSLERLTLCSLEAAKLEESLQVIQPQVAAAKLQECLQGIQPQVAILNASNSLTSSTSAPVLSEVKLNLKRKSRADKIFKDKRDFVSNSHIKERSSVPLEECCICGDTGHSAKSCSYVPLTSHIADKAVPTRARASLPDSLELKKLADNTDSVYVKQFISAGTEFGPFHAEKQSTLNPLIHFPIKIFSEDKILYYLDTVDEDKCNWMIFVNPANYVEEQNLICYQKNLDIYFATVKDINPGESLKIWYAPFYALKMGKELLGFESLAKQQKQETELLNELVKKHQNVVPRSTWNCKFCYRLENSISSFASHLLEHYQHMRQKRCETCNKKFKDNTKYLNHLRYSQCSKNKDISKQSTFCINQIEKPKKDKFTKMDNPVYTCYVCDKIFSKKTVLVGHLAKCHGLIMIENKKNKEFKNDSIGGPLLQFDPGPEILDQPNLILEKSNLSTNILDIGENYNVGNENLILSVDLMLNQNADCNVTSKLTTPQDTEELHTCDICLKKFRTFRAISEHLVAHTGRYFCNDCKKVFTRKESLSSHRCHRQYVLKCKTCGLIFYQAKYLKQHIELRHKNKFRCKKCLKCFITHRKLEEHNCSEIPTENKIKFTCAHCAKYFFTEKYLRRHMKTHIKDTNSKDLTSCPICGQIFVSQEAYRRHLRLQHKEASFDCDICYKKFTRRDTVIEHLMELHGIGSERSQCDICFKFYSSKKKLTKHVKKVHNKSDSKHLKLQNKILNRKIDNGLICPICKKKIKLKSSLRRHIKDIHSLDITVKTNKSKPNDSTPKRFYTRPENEFIKKDEGYACPFCPTVTKLRNSLRRHIRNKHPQQKLVNSKETIGQANDTTDKINAELDEMIADDLFKDLKESIDDLDFTTEVAHTMDNLIESSEIIDALLKEKTANLDTSAFNLSDDISIIPVNCKKFTQKDVFLSMPDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01129015;
- 90% Identity
- iTF_01129015;
- 80% Identity
- iTF_01129015;