Opom017109.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998166.1:66658196-66682616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00019 0.026 16.2 0.2 2 21 176 195 175 196 0.94 2 10 2.1 3e+02 3.4 0.7 2 23 204 226 203 226 0.92 3 10 0.0023 0.32 12.8 2.9 3 23 244 264 243 264 0.97 4 10 3.3e-05 0.0047 18.6 1.0 1 23 270 293 270 293 0.95 5 10 8.6e-06 0.0012 20.4 0.4 2 23 300 321 299 321 0.97 6 10 0.0005 0.07 14.9 0.8 2 23 332 353 332 353 0.97 7 10 0.00018 0.025 16.3 3.8 2 23 360 381 359 381 0.96 8 10 0.02 2.8 9.8 0.4 1 23 387 410 387 410 0.89 9 10 5.1e-05 0.0071 18.0 3.6 1 23 416 438 416 438 0.98 10 10 0.7 98 5.0 0.3 1 23 442 465 442 465 0.90
Sequence Information
- Coding Sequence
- ATGTGCTTAGGTTTACTGAGCTTAGCTTACGACTTAAAAAAGCAGTACCACAAAAGCAAATCAACGCTCTTGACAACGCTGGATGACTCTCAAAGAAAAAGTTTCTATGATAGGCGAACATTTATTTTTCACGATAATGATAATAATGAACAGCCTTTAGAAGCCCAGATAGCGGAAACTATTCCGCAAAAAATAGATAGCAAAAAGAAATCATCAAGTGTGGACTTAATCTCAGGTAAATCCGTATATAACATCCAAGACCTAGTTATCGTGGAAGACCCACCCATAGAAAACAAAGAAGTGTTCAGAGGTTTCATAAATAACTTAGGCTCGGTAATCTCAGGTTCTTTTGTCAAGAAAAACGcgcttattaaaaaagaaacattggAAAATATGAACAAGAAACCGGAAATTGAGATCAAACCTGTGATCAAGAAAAATGATATTGGCGATGTCAACTATGAGCCGCATGAGATTTTATCATTGGAAATCACCTCGGACACGGTTCAAACGTCTGATCCGATGCAATGTCCTCACTGTAAAAGGTCATTTCCGTCTGCGAATTATGTAAAAACGCACATGGCGATTTGtgagaagtttaaaaaattggAGTGCTACATTTGCAATGAAAAAAAAGGAACTCGTAAACGTCTTATATTACACATCAGAAACAAACATTCGATCGGTAAAGGTCTGATTACTTATCCAGAAGAGAAGGAAGCGGCGATATGTCAAATATGTCACAAAATTTGCGTCTCTCTAGATAGTTTAAGAGCTCATAAGCTGAGACATCGAGaaGATCTTAAATACCCATGCGATCAATGCGGCAAAACGTTCGCCTCGCCTTACTATACAAAGACGCATATACTACACGTACACACGAGAAAAACGTTAGATGTATGTCCTATTTGCGCCAAGACGTTTCATTATTCAGGAGGTTTAAGGACCCACATGAGGATTCACCGTCAAAATTATAAAGCAGAAGCGGTCGAAGTGTGTCCCTTCTGTGCCAAGACCTTCCACTATTCAGGAGCCTTAAGCTACCACATCAAGACCCATACCAAGGACTACGATTGTAAATGTTCTTATTGCGATAAAAAGTTCGGTTCTGCTTCTGCGAAAAAAAGGCATGAACGTATGCACACAGGAGAAAAGCCATACCCGTGTCGATTTTGTGGCAGGGCTTTTCGACAAGTTGATCAACGATTGGGCCACGAAAGAGCTTTTCATACTGGAGAGAGGCCGCATAAATGCAAAATTTGCGACGCTGGATttgtcaaaaaagaaaaacttaaaaaacacatGTTTAAACATGAAGGATCTTTTATTTGCCATGTCTGCGAGAAAGGCTTGGTGGAtggggaaattttaaaatatcatttgAAAGTCAAGCATAATCTtacagaagaagaagaagaagacaaGCAGGAAGAAATTATGCAAATAGGTGCAGAAAGTGAAGAAGAATGTTTATATGACGATACTCAAGATTACTAA
- Protein Sequence
- MCLGLLSLAYDLKKQYHKSKSTLLTTLDDSQRKSFYDRRTFIFHDNDNNEQPLEAQIAETIPQKIDSKKKSSSVDLISGKSVYNIQDLVIVEDPPIENKEVFRGFINNLGSVISGSFVKKNALIKKETLENMNKKPEIEIKPVIKKNDIGDVNYEPHEILSLEITSDTVQTSDPMQCPHCKRSFPSANYVKTHMAICEKFKKLECYICNEKKGTRKRLILHIRNKHSIGKGLITYPEEKEAAICQICHKICVSLDSLRAHKLRHREDLKYPCDQCGKTFASPYYTKTHILHVHTRKTLDVCPICAKTFHYSGGLRTHMRIHRQNYKAEAVEVCPFCAKTFHYSGALSYHIKTHTKDYDCKCSYCDKKFGSASAKKRHERMHTGEKPYPCRFCGRAFRQVDQRLGHERAFHTGERPHKCKICDAGFVKKEKLKKHMFKHEGSFICHVCEKGLVDGEILKYHLKVKHNLTEEEEEDKQEEIMQIGAESEEECLYDDTQDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -