Opom006773.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998164.1:44597178-44646236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.9 1.4e+03 1.3 0.0 8 22 96 110 95 113 0.85 2 21 0.053 7.4 8.5 0.7 2 23 116 137 115 137 0.95 3 21 0.0038 0.53 12.1 0.3 2 23 150 172 149 172 0.97 4 21 7.2e-05 0.01 17.5 0.2 1 22 178 199 178 199 0.93 5 21 0.014 2 10.3 0.7 1 23 212 234 212 234 0.98 6 21 0.017 2.4 10.0 0.1 1 20 237 256 237 261 0.92 7 21 1.1 1.5e+02 4.4 1.8 1 23 264 288 264 288 0.94 8 21 0.0032 0.44 12.3 1.6 1 23 332 354 332 354 0.97 9 21 0.039 5.5 8.9 2.4 5 23 363 381 360 381 0.94 10 21 0.0043 0.6 11.9 7.5 1 23 387 409 387 409 0.97 11 21 1 1.4e+02 4.4 0.8 6 23 517 535 515 535 0.94 12 21 0.31 44 6.1 1.1 2 20 540 558 539 560 0.93 13 21 3.1 4.4e+02 2.9 1.5 1 23 582 605 582 605 0.92 14 21 0.013 1.8 10.4 1.1 5 23 613 631 610 631 0.93 15 21 0.0013 0.18 13.6 1.2 1 23 703 726 703 726 0.97 16 21 9.1e-05 0.013 17.2 0.2 1 23 731 754 731 754 0.94 17 21 0.12 16 7.4 4.4 1 23 765 787 765 787 0.98 18 21 0.038 5.3 8.9 1.8 2 22 820 840 819 842 0.88 19 21 2e-05 0.0028 19.3 4.7 1 23 878 900 878 900 0.98 20 21 0.00023 0.032 15.9 0.5 5 23 909 927 906 927 0.95 21 21 1.3e-05 0.0019 19.8 5.0 1 23 933 955 933 955 0.97
Sequence Information
- Coding Sequence
- ATGGAATACAGCGGCCAAACTGGTCTGGATCGGCACTTGAAGTTGTCATCTTGTAAATCCTTGATGCCTAGACAAGTAAACCGTATGGTTAAAGAACCAAAAACGTATATTTGCAATGTTTGTACTTTCGATAGCACCAGCTTTAAACAGATGTTCTGCCATATGGAAAAAGTGCACTCAGACACTGTCAATTGCATATTTTGCGAGAAGAAATTCCTCAACAAGTTCCGTTTActttgtcatattaaaaatcacgGACATCACGTGTATTGCGCCaatcattttaaagctttcgACACTCCTGAGGAACTTTCAGCACATTTCAAAGTGCCCGGACACGATTTGGAATGCGGAGCATGTTTTCAAGTGTTTAAAAGCAAAGCGGCAAAGTATCGTCATAGAAGATCTCATGCAGGGCGTAATAAAAATAAGCCAGTAATGTCGATTAAATGCCCGCAGTGTCCATTATTATACAGCTCTCGTGTTGCCGTCAGGAGGCATCTGAAAACTTTTCACGAAAAAAGTGTACAGTTTCTATGCGAGGACTGTGGGGCCTcgTATTCCACAAACTACGCTTTGCAGAATCACCGGCGGAAATGTCAAGGGAAACCTACTGCACGAAGTGAACAGTTATATCAGTGTGAGCTTTGTGGCTTTGATGTCAATGATAAGAAGACATTTATGTTACATAGGGCTAGACACTACGAGTTCTCTTGTGAATACTGTCTAGAGCCTTTTAACGATGCTGAAAAACTGAAGGAGCACGAAGAGgctGCCAATCACCAATGGTTTTATTGTGAGAAATGTCCTGAAATGAAATACAGAATGAAATCGGCACTACACATGCATACTTTGAGAGTCCACGACAAAATATTCgATGAAATTCCTGGGAAACGTCCAAGGAGCAATGTTCGAAAGCCGACCGGGGCCAGTAGAAAACAGAGAAAGTGGCGAAGAGAAAAAGTAAAGTGGCCTAAATTGGAAAATGGCAATTACTATTGCAAGATCTGTCAAAAAGAGTTTCAAAGAATGACCAGTATTAGCAAGCATATGGATCTTCATTCCgGCACTCCAAAATACAAATGCCACTGCGGCAAACAATTTTTTCAGGAGCAAACGCTTAAAGCTCACTATTCAGTACACAGCAACGACAGACCCCACGTTTGCCAAACTTGCGGAAAGTCCTTTAAGGAAAGATGTTCATTTTATAAGCACAGGAAAGTGCACGGCTACGTACCCAAATTCAAAGGCGGTAGACCGAAAGAACATGTCACATACCATCCCAGTTTCCGCAATTCGAATACTTCAAACGAAAGCAAAGACGGGGCTCCAGGTCCTCGTAGAAAGAATCTCGAACCAAGCAAAACTAAAATAGAGATCGCCAGAAAATTTGTCGTCGTTAAAGTACCAAAGAAAATCGCCGTTCAGAGTTCTGCTGCTGCTAACGAGCATACAAATGAAGACTTAATCGCccttgaaaatttaaataatgaagAGCTATTACCGACTGGATCAAACCATCGAGAAAACGAATCGTTTTACAGGAGATGCGATTATATCTTCCTCGACAACCACGCGCTCTTCAAACATTTAAAATCTGAACACAAACCGAAGAAAAAATGTCACGGGTGCCAAGAGGAATGCGACACCGAGAGCGCTCTGGACCAGCATGTAACAAACTGCGTAAAaatgatttccataaaaaaagAGCGCACAATTTCCGACGCCCAGAAAGACGGCCACTTTACTTGCAACGTGTGTCAATTCGAGAGTGTTACCTTCAAAGAAATACATGCTCATCTACAGGACAAGCACAGCGAGACTGTCAACTGCATTATCTGCGATttgaaattcaaaaacaaatatcaAGTGCTGTCCCACCTTAAAAGACACGGCAAAGGGCTGTATTGCGCTCAGCATTTCATGGCTTTCGAGACCAGGAAGAAATGCATGGCTCATTTTAAAACTCCCGGACACGACCTCGAATGCGGTGTGTGctttaaaagATGCTTGACGAAAAAAGCCAAAAGAAGTCATATGAGTAATGTCCATTTGAAAACCCATTTCAAAGCCCACCCGTTCCGCAAACATTACAAAGAGAAGTACTACAAGTGTAGCCAGTGTCCCAGGGTGTATGACTACTACATGAGTTTATACAAACATGTCAAATCTATTCACGAAAAGAGAGTTTTTCTCTGCGAAGACTGTGGAGCTTctTATACTACAAATTTAGCCTTGAGACGCCACATCTCCAAAGGTCACCAAGGCGGCACTAAGGTGGGCAAGGTGTCGTATCAGTGCGAATTTTGTGGATTCACTGTGAATCATTTAACCAGGTTCAGAAGACATAAGGCTAAACATTATGATAAAAATCACGTGTGCGGATTCTGTTTGGAACCGTTTGAATGCGCAGAAAAACTCAAGGAACACGAGGAGcgTGTGAAGCATGAATGGCTTTATTGTGAGAAGTGTCCAGAGAAATATAAAACCCATCGAACTCTAACATTGCACAAAGGCAATGTTCATGAAAATAATGGAGCTGTGGTCAAAAAGCCCAATAATACCGGTGGTAGAGGCAAACCAAGAAAACGACCAGGAGAATACAAATGGCCAAGATTGGAAAATGGCAATTACTATTGTCAAATATGTCATAAGGAGTTTAAACATCTGTCTAATGTCCAGAAGCATATGGACATCCATTCCGATGCTCCAAAGTACAAGTGCGATTGTGGCAAGGAATTCAGGCAAAAACAAGCTCTCAAAGCCCATTACGCCACGCACAGCGAACTAAGACCACACGTTTGCCAAATGTGTGGGAAGAGCTTTAAGGACAAGAGCTCCTTTTACAAACACAGAAAACTCCACGGATGGATACCCATAATCAAAGGCGGCGGAAGACCGAAAGAAGAGAGTTTTCACAACTAG
- Protein Sequence
- MEYSGQTGLDRHLKLSSCKSLMPRQVNRMVKEPKTYICNVCTFDSTSFKQMFCHMEKVHSDTVNCIFCEKKFLNKFRLLCHIKNHGHHVYCANHFKAFDTPEELSAHFKVPGHDLECGACFQVFKSKAAKYRHRRSHAGRNKNKPVMSIKCPQCPLLYSSRVAVRRHLKTFHEKSVQFLCEDCGASYSTNYALQNHRRKCQGKPTARSEQLYQCELCGFDVNDKKTFMLHRARHYEFSCEYCLEPFNDAEKLKEHEEAANHQWFYCEKCPEMKYRMKSALHMHTLRVHDKIFDEIPGKRPRSNVRKPTGASRKQRKWRREKVKWPKLENGNYYCKICQKEFQRMTSISKHMDLHSGTPKYKCHCGKQFFQEQTLKAHYSVHSNDRPHVCQTCGKSFKERCSFYKHRKVHGYVPKFKGGRPKEHVTYHPSFRNSNTSNESKDGAPGPRRKNLEPSKTKIEIARKFVVVKVPKKIAVQSSAAANEHTNEDLIALENLNNEELLPTGSNHRENESFYRRCDYIFLDNHALFKHLKSEHKPKKKCHGCQEECDTESALDQHVTNCVKMISIKKERTISDAQKDGHFTCNVCQFESVTFKEIHAHLQDKHSETVNCIICDLKFKNKYQVLSHLKRHGKGLYCAQHFMAFETRKKCMAHFKTPGHDLECGVCFKRCLTKKAKRSHMSNVHLKTHFKAHPFRKHYKEKYYKCSQCPRVYDYYMSLYKHVKSIHEKRVFLCEDCGASYTTNLALRRHISKGHQGGTKVGKVSYQCEFCGFTVNHLTRFRRHKAKHYDKNHVCGFCLEPFECAEKLKEHEERVKHEWLYCEKCPEKYKTHRTLTLHKGNVHENNGAVVKKPNNTGGRGKPRKRPGEYKWPRLENGNYYCQICHKEFKHLSNVQKHMDIHSDAPKYKCDCGKEFRQKQALKAHYATHSELRPHVCQMCGKSFKDKSSFYKHRKLHGWIPIIKGGGRPKEESFHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -