Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998170.1:78122874-78124862[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.2 28 6.7 0.5 1 23 96 119 96 119 0.93

2 16 0.067 9.4 8.2 1.0 2 23 129 150 128 150 0.94

3 16 0.083 12 7.9 1.9 2 22 203 223 203 225 0.89

4 16 0.36 50 5.9 0.4 2 23 233 254 232 254 0.96

5 16 0.046 6.4 8.7 1.2 1 23 263 286 263 286 0.94

6 16 1.2 1.7e+02 4.2 0.3 2 23 300 321 299 321 0.93

7 16 0.26 36 6.3 2.3 1 23 330 352 330 352 0.98

8 16 0.00061 0.086 14.6 5.1 1 23 362 384 362 384 0.98

9 16 2.8e-05 0.0039 18.8 3.5 1 23 394 416 394 416 0.98

10 16 5e-05 0.007 18.0 0.3 1 23 425 447 425 447 0.98

11 16 0.003 0.43 12.4 6.1 1 23 456 479 456 480 0.97

12 16 0.64 90 5.1 6.0 2 23 491 512 490 512 0.97

13 16 0.0061 0.85 11.4 2.7 1 23 523 545 523 545 0.99

14 16 1.6e-05 0.0022 19.6 3.5 1 23 554 576 554 576 0.99

15 16 2.2e-06 0.00031 22.3 0.4 1 23 585 607 585 607 0.98

16 16 0.55 77 5.3 2.0 2 23 617 639 616 639 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.2	28	6.7	0.5	1	23	96	119	96	119	0.93
2	16	0.067	9.4	8.2	1.0	2	23	129	150	128	150	0.94
3	16	0.083	12	7.9	1.9	2	22	203	223	203	225	0.89
4	16	0.36	50	5.9	0.4	2	23	233	254	232	254	0.96
5	16	0.046	6.4	8.7	1.2	1	23	263	286	263	286	0.94
6	16	1.2	1.7e+02	4.2	0.3	2	23	300	321	299	321	0.93
7	16	0.26	36	6.3	2.3	1	23	330	352	330	352	0.98
8	16	0.00061	0.086	14.6	5.1	1	23	362	384	362	384	0.98
9	16	2.8e-05	0.0039	18.8	3.5	1	23	394	416	394	416	0.98
10	16	5e-05	0.007	18.0	0.3	1	23	425	447	425	447	0.98
11	16	0.003	0.43	12.4	6.1	1	23	456	479	456	480	0.97
12	16	0.64	90	5.1	6.0	2	23	491	512	490	512	0.97
13	16	0.0061	0.85	11.4	2.7	1	23	523	545	523	545	0.99
14	16	1.6e-05	0.0022	19.6	3.5	1	23	554	576	554	576	0.99
15	16	2.2e-06	0.00031	22.3	0.4	1	23	585	607	585	607	0.98
16	16	0.55	77	5.3	2.0	2	23	617	639	616	639	0.96

Sequence Information

Coding Sequence: ATGAAATCGGAACCCACAGAAAAATCAACAACAGCAACCCAAGCGGAAAACGAAACTCCACAGTATGAGCAAATCTCTGTGAAAGGCTACACCTCAAATCTTGTGAGAGAAGATCCCGTCAGTGACATCGCCACAATGTATAAAGACAGCTTCATCAGTTTCGAAAAACAAAAGTACCACCAAGAAATCTTTGATAAAATTATAGAAGACTTGAACCAAATTACAATTACAGACCTCGAAAACGAATATATTGACCAAATTCGGAGAGCGGCGAAACTAGAAGTATTTAATTGTTCCTTCTGCGAATACCAGACAATGCAAAAATCGAATATTAGATTACATTTGGTTATAATTCATAAAACAGATACGGAAACCAACATGCTGAAATGCCTGAAATGTTCTTATACCTCTAAGTCGGCTAAATACATGCAAAGGCATGCATTAGGCCATAAAGATGAAGAGTCGGATATGggaaatgatgatgatgattattTATCTGATACTTCTTCTGCCGAcgattttgttgtaaaaaaaatttttcgaaatacTAGGAGCAAGAAAAAAGGTATGACAAGAActaaaaatcgattaaaaagTAGCTTGAATAGGTGTTCGAAATGTGATTTTGAGTCGAACAAAAAGACCGATCTGAAGAAACACGTATTTGCGAGTCATCAAGAAGATATCAAATTGTGGTCGTGCGACCTCTGCAGCTTCGAAACCGGAGATAAAGAGTCGTTTTTCGCGCACAAACAATCACATAAATGTCGCGACAACATGAAAAAATTTGCCTGCTACGAGTGCGAGTATCAAAGTTTCGACAAGgtcaaattgaaaaaacatTTGTTGAAACTGCACAAAATCGTGACCAAAGGCATGGATTCCATAAGAATTTTGAAATGCGAATTTTGCGACTACGAAACCGATCTCGTTCGCTCCCTTCAAGTTCATTCTTTGTCTCACAAAACCGCCGACGAAATTCAGTGGTTTCAGTGCGAAGCGTGCGAATTCAagacgaaatttaagaaatcGTATACCGAACATCTGATCCGTCACAAAAACCCCGAAGAAATCGAAAAGAGTTTTATGTGCGAGTTTTGTAGCTACAAGTGCCGCACCAAAGGGTCGTTAAAGAAACACCTGTTAACGCATCGGCCGCCCGACGAGAACACCGAGTGGTTCAAATGTCCCGAATGCGATCACAAGACCAAGAGCAAAAGCCACCTGAGAGTGCACGCGATGGTACACAAAGATCCGTCGGAGATTAAGATGTTCGTGTGCGAAATATGCGGCTTGCAAAGCAGAAGAAAATGGAACTACGAAATGCACATGTTGACGCACAAGAACGCCGCGGAGGTAGAAGTTTTCAAGTGCACCGTGTGcaattataaaaccaaatttaaggACCGATTAAAGCGACATCTAAAGAAAGGGCACCACGGCGGACGGGGCCGAGAGGGCAAACTGCAAACGTGCTCGATTTGTAATTTCGAGTGTCGGAACCGTAAAGTTTATTGCCGTCACGTGATGAGTCACAAAAGCGAAATTAACCAAGTCGAAGGTGCCTACGTTTGCGACGTGTGCGACTTCAAAACTATGTACAACAGTTCGTTTTCGAAACACAAAAAGACGCACAAAACCATGGATGAAGTGCAGACGTTCAAATGTCCTGAATGCGATTATCGTACCAAGTTTAAAGGCAACTTAAAACATCACGTCAACACGCACAAAGACCCGAGCGAGATCACCATGTACAAATGCGGCACCTGCGGCATTCAGTTTAGGAGAAAGGAGAATCTGAACGTGCATTTGTTGCTTCACAAAAACCCGGATGAAGTGGAAATGATCAAGTGCTCTTTGTGTTCCTATCAAACGAAGTTTAGAGCGTACATAACTACGCACTTAAAAAAGACTCATAAAATCGTCACCAGGAAAAATGAGTATAAAGAGTATACCACCACTATTAATCCTCAAACTGTTGcaatttga
Protein Sequence: MKSEPTEKSTTATQAENETPQYEQISVKGYTSNLVREDPVSDIATMYKDSFISFEKQKYHQEIFDKIIEDLNQITITDLENEYIDQIRRAAKLEVFNCSFCEYQTMQKSNIRLHLVIIHKTDTETNMLKCLKCSYTSKSAKYMQRHALGHKDEESDMGNDDDDYLSDTSSADDFVVKKIFRNTRSKKKGMTRTKNRLKSSLNRCSKCDFESNKKTDLKKHVFASHQEDIKLWSCDLCSFETGDKESFFAHKQSHKCRDNMKKFACYECEYQSFDKVKLKKHLLKLHKIVTKGMDSIRILKCEFCDYETDLVRSLQVHSLSHKTADEIQWFQCEACEFKTKFKKSYTEHLIRHKNPEEIEKSFMCEFCSYKCRTKGSLKKHLLTHRPPDENTEWFKCPECDHKTKSKSHLRVHAMVHKDPSEIKMFVCEICGLQSRRKWNYEMHMLTHKNAAEVEVFKCTVCNYKTKFKDRLKRHLKKGHHGGRGREGKLQTCSICNFECRNRKVYCRHVMSHKSEINQVEGAYVCDVCDFKTMYNSSFSKHKKTHKTMDEVQTFKCPECDYRTKFKGNLKHHVNTHKDPSEITMYKCGTCGIQFRRKENLNVHLLLHKNPDEVEMIKCSLCSYQTKFRAYITTHLKKTHKIVTRKNEYKEYTTTINPQTVAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -