Opom032864.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:77657611-77690111[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0054 0.75 11.6 1.6 1 23 190 213 190 213 0.95 2 13 0.057 8 8.4 3.3 1 23 286 308 286 308 0.98 3 13 0.017 2.4 10.0 0.7 1 23 317 340 317 340 0.94 4 13 0.0022 0.31 12.8 1.5 2 23 354 375 353 375 0.97 5 13 0.0058 0.81 11.5 3.1 2 23 385 406 384 406 0.97 6 13 2e-05 0.0029 19.2 1.1 1 23 418 440 418 440 0.97 7 13 0.00053 0.075 14.8 1.3 1 23 450 472 450 472 0.98 8 13 0.002 0.29 12.9 2.1 1 23 477 499 477 499 0.98 9 13 0.0062 0.86 11.4 1.3 1 22 508 529 508 532 0.91 10 13 2.7e-05 0.0038 18.9 0.1 2 23 552 573 551 573 0.92 11 13 0.0013 0.18 13.5 3.3 1 23 582 604 582 604 0.98 12 13 0.00039 0.055 15.2 0.5 1 23 613 635 613 635 0.98 13 13 0.0054 0.76 11.6 3.3 1 23 644 667 644 667 0.98
Sequence Information
- Coding Sequence
- ATGGCAACAATTCCCGAAAGTCCCCGTGCTAAAGAAGCTTTGTTAGGTCTGGAAGAGGGCTTTAAAAACTGGTTGCGACCCCCAGATCACATTCCTGTAGGTGGAGATGGTGTAGTTGCTCAAGACAATAATTCTTCCAATGGGGTTGATGTCAAAAGCGAGTTGAAGGAGGAAAATGTGACTGTAGCAGTGGACATTGAAACTAAAGTACAAAGCAAAGATGACGATGAGAAAAGCAAGGATAAAAATGATGAGGACACTGCCAGTGTAAATTCTGTAAAAGAAGAGGACAATTCAAACAACAAACTCGGCTCCATCAAAAACGACAACAAAACGGACTTCCAGTACAAAACCGTGATGGTCAAGAGCTACTCATCCAGCTCGACAAAAGAAGAACCGATAGAAGACATCAGCACCATGTTCatggaaaacattttaaactacgaaaaacaaaaattccacCAAAACATCTTCAACGAAATGATGGAAGACATTGGTAAAAATAAGTTCGAGGAGCTTCAAAACCAATACATTGAATATTTAAGGAAAGCTACAGATCTAGAAACTTTTACCTGCTTGAAATGCGAATATCAAACAATACATAAAGCCAACCTGAAAAGTCATTTGCTTTTGATTCACAAAAAAGACTTGGAGGTGAAAATGTTTCAGTGTACAGTGTCGAGATgctattttaaagctaaaagtTTGACAGGTCTTAAAAAACATCACACCATGAACCATGAGGAGGATGAAGATGATTATTTCAGCGAGTTGGAAGCTCATAGTGACAATGACTGGGAGGAATTTGaggaaaaacccaaaaaatcgTCGgcgaaaaaaaggaaaaaagtcGGGTTCACCTGCGATCTCTGTAGCTTCGAGTGTAAAGAGAGGAAGTCGCTCAAAACACACGCAGAAACCCATAGATGCCCCGACAACCCTAAGAAATTTTTGTGTTACATGTGTGACTATGGAGTCACGTTCAAGCCCTATCTTCAAAAACATTTGCTTAAAATGCATAAAGTTATCACAAAGGGCGCGCACAAGTTCAAGGAGATGAAGTGTCCTTATTGCGAGTATAAGACGGACACCAAGTCGTGTTTGGATATTCATTTGATCACTCACAAAAGCCCGGATCAGATCAAGTGGTTGAGTTGTacgttttgtaattttaagGCTAAATACAAAACATCTCTAAGGCAACATTTGAGAACTCACCGGCCGCCCGAGGAGCAACAAGAAATGAAAAAATTCATGTGCGACGTGTGCTCAAAAAGATTCAAAAGGAGAGAGGCTCTGGAAACGCACAGTCTTACCCACAAAAGTATTAACGAAGTTAGCAAGATCTACAAGTGTCCGCAATGCAAGTTCCAGAGTAAATTCAAGGGTTCTCTCCGAGCACACATGGTAATGCACGAAGAACCCAGTTTTATATGCGACACTTGCGGTTTCCGCACTCGGAAAAAGTACAACTACGAACTGCACACTCTGACTCACAAGAGCGAGAGCGAAGTCACCCTTTATAGATGTTCTATCTGCTCTTATTACAGTAAATCTAAGgtATACTTTAAAGCCCATATGGCTAGAGGCACCCACCTGGGTCGCACGAAACGGTCGAAAAATTCCACCGAAAAACCCACGCAAGAAGACTGGATTTGCGATATATGCGGCGTGAAATTTTCCACCAAGGGAAATTTGAAAAACCACTCGGTCGTGCACAAGACGTTGGACGAGATTGAGATCTTCAAATGCTCGGAATGTTCCTTTGAGACCAGGCACAAAGGCAACCTCGTAAAACACGAGCGACAACACAAAGAAACCGAACCAAATCCGGCATTTAAGTGCAAAATTTGCGGGCTGCAACTAAAGAAAGAGTGGAACCTCCGCATGCACCTGGTGACTCACAAAAGCGCCCACGAGGTGGAGCTGTTCACCTGCTACGTGTGTTCCTATCAGACCAAGTTCAAAGAGTACCTTAAAGCGCACTTGAGGAAACGGCACGGCATTACGTCGGGCAAGCAGAGGAATCCGATACGCAGGAAAGTGAATTGA
- Protein Sequence
- MATIPESPRAKEALLGLEEGFKNWLRPPDHIPVGGDGVVAQDNNSSNGVDVKSELKEENVTVAVDIETKVQSKDDDEKSKDKNDEDTASVNSVKEEDNSNNKLGSIKNDNKTDFQYKTVMVKSYSSSSTKEEPIEDISTMFMENILNYEKQKFHQNIFNEMMEDIGKNKFEELQNQYIEYLRKATDLETFTCLKCEYQTIHKANLKSHLLLIHKKDLEVKMFQCTVSRCYFKAKSLTGLKKHHTMNHEEDEDDYFSELEAHSDNDWEEFEEKPKKSSAKKRKKVGFTCDLCSFECKERKSLKTHAETHRCPDNPKKFLCYMCDYGVTFKPYLQKHLLKMHKVITKGAHKFKEMKCPYCEYKTDTKSCLDIHLITHKSPDQIKWLSCTFCNFKAKYKTSLRQHLRTHRPPEEQQEMKKFMCDVCSKRFKRREALETHSLTHKSINEVSKIYKCPQCKFQSKFKGSLRAHMVMHEEPSFICDTCGFRTRKKYNYELHTLTHKSESEVTLYRCSICSYYSKSKVYFKAHMARGTHLGRTKRSKNSTEKPTQEDWICDICGVKFSTKGNLKNHSVVHKTLDEIEIFKCSECSFETRHKGNLVKHERQHKETEPNPAFKCKICGLQLKKEWNLRMHLVTHKSAHEVELFTCYVCSYQTKFKEYLKAHLRKRHGITSGKQRNPIRRKVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -