Opom033388.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998171.1:11151267-11191367[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00047 0.066 15.0 0.2 1 19 201 219 201 221 0.96 2 12 0.0055 0.77 11.6 1.5 2 21 233 251 232 254 0.87 3 12 1.7e-05 0.0024 19.5 0.1 1 23 257 280 257 280 0.97 4 12 0.017 2.4 10.1 1.4 1 23 285 308 285 308 0.96 5 12 0.0023 0.32 12.8 4.3 1 23 319 341 319 341 0.97 6 12 0.0008 0.11 14.2 4.1 1 23 347 370 347 370 0.96 7 12 3.3e-06 0.00046 21.7 0.8 1 23 376 398 376 398 0.94 8 12 0.00091 0.13 14.0 0.5 2 23 405 427 404 427 0.94 9 12 0.00097 0.14 14.0 0.9 2 23 462 483 461 483 0.96 10 12 0.057 8 8.4 0.1 1 23 489 511 489 511 0.95 11 12 0.51 72 5.4 0.4 1 23 518 541 518 541 0.95 12 12 0.00026 0.036 15.8 1.1 1 23 546 569 546 569 0.98
Sequence Information
- Coding Sequence
- ATGAGCGCCCCTGATTATGGAGCCCCGTTGGGAGCTCCAAAGGCAGCCCTGTTCAAATGTTGGACCTGCTGGAAAAGCAAGAGTCCCGCTGGGTGTCTTAAGGCCACTGATAGCATCGACGGCGGCGCCAGCATCCGCCCCGTGAAGGTCGTGCTCAACATGTGCGTGCCTCAAGTGACTATGCCAGATGAAAGCAgtatttgcaaaaagtgctcCAGACAACTTGCCATTGCCAGTGAATTCATTGAAAAAGTCAACTACACTGAGCAGGTTTTAAGAAAAGAAGACATGGAGGCGAAAAGAGTCACAGAAATTGGTGAATTGATATTGAAAGAAGATGACAATAtcgaaaaaattattgatatgACCTCGGATATGACTAATGATCCTTTGGAGGACATGTCTGAAGATTATGATGATTCCTTTCTTTTTGATGATGACTCTGAAAAATCCTGGCAGGGATGGGACACTTCAGAGACTCAACAGAACAAATCCACTGAAGAACATGATTATTCTGTTGAAAATGAGAATCATAAAGAAAatGTAAAACTGTTCTCCATAAATAAATCTATCCAATGGAAAAATCTAAAGCCGCTCAACTTTAAGTGTGGGAAATGTGGAAGAGTATTTGCATCTCTAATTGAATATCAAAGACATGAATCAGCTGTTTTTGATGCGCCTTGCTGTGATTTTGTGAAATGTAAGGTTTGTAACAAAAAGTTTACCAAGGAAGATTACCAAAAACATTCAACAGAAGTACACAGCGGCTTTGTCTGCGAAGAATGTGGAAAGTCCCTGGGCTCCCAGATTGCTCTAAGGTCTCACATGAGAAACGTCCACCCGAAAGTGACCTACATGTGTCAGTATTGCAACGAGCCGATGAAAACGTTGAATTCCTTGCAGAATCATGTTAAACATGCACATCCTGATAAGCTAAATAAGGAACTTCAGAAATTCCACTGCGATAGATGTCCAAAAAGATACGAAAAGAAGACATCGTTAGAAAGGCACAAAAAATGGCACGACAACATACGAGACTTTCATTGCGAATACTGCTATAAGAGTTTTTTCACTAGCAATGAGTTGCTCTCCCATACTAGGTTAATGCATTCAACCGAGGAAACGTTCTTCTGTAAAATTTGCGGAAAAGGTTTCGTAAGATCGGACTATTTGAGAAGGCACGAAGCGTACCatgtaaaatatgaaaattctTCTTGTACCATTTGCAAAAAACTGTTCAGATCAGAGGCCAAGTTGATGTATCATATGCAGgcagGTCACTCAGAAGATGGCACTTCTTTAGAACAGCCCAAAGACGCAATTACTacggaattaaaaataaaaaactctgGAAAAATGCCCGGTCAATACAAAACCAAGTGCGTTtgcaaaatctgcaaaaaagtCATCGCCAACCCGTTCGGTTTAAGAGTTCACTACAAATCCCATCTGAAACTGAAATCGTTCAAATGTTCCGTGTGCGGGGTCCTGCTTCAGTCACCCATTTCGTTGAAGAGACACGAGGAGCTTCACAAGGACCCTAACTATAAGTTTGCGTGTAAAATATGTCATGCCCGTAAAAATTCCGCGGCTGAGTTAGAGTACCACGAGAACACCGTCCACAAGACGAAACGATACAAGTGTCATTTGTGCTCGGAAGCCTTCGGCAGGAGGTACTTGTTGGACAGTCATCAAGCCACAGAACATGCGGACGAAATTCTAAAAAGGGAGATTATCCTCGAGGAGCTGAGCAAAGAAACGATGTACTTGGATCCCAGCGACGATCATAATGTCCTTTATAGaGGGCCCAAAAACAACAAAGGGACCAAGGTCGGCGTAGACGACTCGGAAATTAACGAAATTTGCGAAAAAGTACAACACAACGAGTACAGTTATGATGACATGCTTGAGGATGAGGAAGAAGCGGCTGTAGTCACTCAGGTCATCGAAGACAACGAAGAAGCTCAGATGGTAGCCGACAATTTACAAATCACCCCGGAGGAGCTGAAAGGTCACACGCTGCAAGAGGTACGCCCCGGCGAGTTTATCGCGTTCAAACAAGAACCCGACGCTGATGAGGTCCAAATGGTCCAAGACTTGGGAGACGGCGAGTACGCCATCATCGATTCCGACGAACATCTGGCCCAGTTGAAAACCGAATCAGGTACAATAAAACTAACTTTATTTAACGGTtag
- Protein Sequence
- MSAPDYGAPLGAPKAALFKCWTCWKSKSPAGCLKATDSIDGGASIRPVKVVLNMCVPQVTMPDESSICKKCSRQLAIASEFIEKVNYTEQVLRKEDMEAKRVTEIGELILKEDDNIEKIIDMTSDMTNDPLEDMSEDYDDSFLFDDDSEKSWQGWDTSETQQNKSTEEHDYSVENENHKENVKLFSINKSIQWKNLKPLNFKCGKCGRVFASLIEYQRHESAVFDAPCCDFVKCKVCNKKFTKEDYQKHSTEVHSGFVCEECGKSLGSQIALRSHMRNVHPKVTYMCQYCNEPMKTLNSLQNHVKHAHPDKLNKELQKFHCDRCPKRYEKKTSLERHKKWHDNIRDFHCEYCYKSFFTSNELLSHTRLMHSTEETFFCKICGKGFVRSDYLRRHEAYHVKYENSSCTICKKLFRSEAKLMYHMQAGHSEDGTSLEQPKDAITTELKIKNSGKMPGQYKTKCVCKICKKVIANPFGLRVHYKSHLKLKSFKCSVCGVLLQSPISLKRHEELHKDPNYKFACKICHARKNSAAELEYHENTVHKTKRYKCHLCSEAFGRRYLLDSHQATEHADEILKREIILEELSKETMYLDPSDDHNVLYRGPKNNKGTKVGVDDSEINEICEKVQHNEYSYDDMLEDEEEAAVVTQVIEDNEEAQMVADNLQITPEELKGHTLQEVRPGEFIAFKQEPDADEVQMVQDLGDGEYAIIDSDEHLAQLKTESGTIKLTLFNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -