Opom032910.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:78212652-78214961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.52 73 5.4 1.1 1 23 52 74 52 74 0.92 2 18 0.0023 0.32 12.8 3.0 1 23 83 105 83 105 0.98 3 18 0.16 23 7.0 0.8 2 23 114 135 113 135 0.93 4 18 0.015 2.1 10.2 3.8 1 23 144 167 144 167 0.96 5 18 0.0037 0.52 12.1 2.1 1 23 194 216 194 216 0.98 6 18 1.2e-05 0.0017 20.0 5.4 1 23 225 247 225 247 0.98 7 18 0.37 52 5.8 2.4 2 23 256 277 255 277 0.94 8 18 0.00083 0.12 14.2 1.1 2 23 287 309 286 309 0.96 9 18 0.0069 0.97 11.3 1.6 1 23 417 439 417 439 0.96 10 18 5.1e-06 0.00071 21.1 4.2 1 23 448 470 448 470 0.98 11 18 0.078 11 8.0 2.2 2 23 479 500 478 500 0.96 12 18 0.0043 0.6 11.9 2.6 1 23 509 532 509 532 0.97 13 18 0.0008 0.11 14.2 1.5 1 23 537 559 537 559 0.97 14 18 1.9 2.7e+02 3.6 0.2 1 23 567 591 567 591 0.93 15 18 0.016 2.2 10.1 8.2 1 21 600 620 600 623 0.90 16 18 0.00017 0.024 16.3 1.4 1 23 632 654 632 654 0.98 17 18 0.0016 0.23 13.3 4.1 3 23 665 685 663 685 0.97 18 18 0.026 3.6 9.5 6.0 1 23 694 717 694 717 0.98
Sequence Information
- Coding Sequence
- aTGAAGAAAGAACCAACAGAAAACCAACAGGACTGTAAAGAGAAACCAATTGTAGAAGGGGATCCACTCATCGTAAATAATGAAGAATCACCCGTCAATCAAGAGGCATCCGCCAATGAAGGACCACCCATCAATCCTAAAACTCCCACCATATATCTATGTGAAGTTTGCTCCTTTCAaactaaatacaaaaaaggccTCAAATCCCATTCCATCCTTCACAAAGACCTAACAGAAATCGAATTATTTCCGTGCACATTTTGTGCGCACGTAAGCAAGAGAAAGACCGATTTAAAACAACACATGCTGAAGCACAAGTTGAACAAAGACACGATTCTAAGGTGTACTCAATGTCCCTTCGAAAcaagttataaaaaaagtttattgatTCACGAGTATAACCACAAGAATGCCTGggagaaagaaaactttaattgtGACTTTTGTCAGTTTACAACGAAATACGAAAGTTACTTGAGAAGACATACTAAGAACATGCACGGCGTACTTAGTCCACCTAAGCCCAAGAAACCGAAACCTCCTGTTCAACACGTTAAAAAGACGGTGAttcctaaaatatataaatgtgaagtTTGCTCCTTTCAGACCAAATACAAAAGCAGCCTGAAGGATCATTCGATCACGCACAAGAACATAATGGAAATCGAAGTGTTTCCTTGCTCACAGTGCCCTCATGTTTGTAAACGAAAGTCCGATCTGAGGCAGCACATGCGCAAGCATGATTCGAACAAGAATAACATCCTAAAATGTTCCAAATGCTCGTTCGAaacgttttataaaaaaagcttgAAAATCCACGAGATGAATCACAAAAACGAAAGCGAGATAGTAATGGTTAGTTGCGAACTATGTGGATTCCAAACAAAGTATAAAGATTCGTTGAGGAAGCATAAGAGAGTCATGCATGGCAATAAGAATCGTCCTGTGAAACGAACGACTAACAAGAAACTGATGCGTTTCTTGTCAAAGAAAAAAGTTGTCAACAATGATGTCTCAAACGATTTCGCGGATGTTCTAGATAGTCCAGTCAAAGAAGAACCTAAAGAAACGCCAGGTTTTGTGTGCGAGGTAAAAATGGAACCAGAAGAAACCAAAGTTGAACCGCAAGGAATTAAATTCGAAGTGAAACCAACCAAAGTTAGGGCCAAGAAGATTATCAAAATTAGGCCTAAAAAGACTACAAAAACTAAACGTGAAGGATCGAAAGACGCTGAAAATCCGATCATGTTCAAATGTGAAATTTGTTCGTTTAAgactaaatacaaaaaaagtctGAAAGACCATGGGATAATACACAAAGATTTGACGGAACTGGATTTATTTCCTTGCACAGTTTGTGGACACGTATGTAAACGAAAGTCCGATCTGAAGCAACACATGTTGAAGCACGATTCAACTGGAGCAACTATTCTAAAATGCGATCAGTGTTCTTTCGAGACGGTGCATAAGAAAAGCCTAAAAATTCACGAGTTAAGTCACCGAAATGACGCCGAGCTGGAACTTTTTACTTGTGAAGTTTGTCAATTTCAGTCAAAATACAAAGATTCGTTgcgaaaacataaaaaagttatgcACGGTAATGAGCTTTTCGCGTGCTCTATTTGTCAGTATCAAACGAGACACAAAAATAATCTTGCCGAACATATTTTGAGACACAGGGTAGTCGAAACGGACTTGTTTTATTGTTCCGAACCCAGCTGTCAATATCAGTCGATAAGAAAAGCAGACATCAAAAAACACGCTTTAATTCATAAAAGTTTCGACCAGATTACTGCTTTTCAATGCCATACTTGCAATTTCAAATGTAAAAGAAAATCTGAGTTGGAAAAACATTTTGCGTTTAAACACAGGCCTCAGGAAGACTTGCCCAAATTCACTTGCGAGGTCTGCTCATTTACCACCAAATACAGGGAAAACCTTCTACGTCATCAGATGATTCACAAAGACGATCAAGATTGTAAGATGTCAATTTGTGAATTTTGCTCTTACACTACCAGACACAAAGACAATTTCAAGCAACACCTAAACACTCATAAAAGTATGGAGGAAGTGAAAAGTTACAAGTGTCAAATGTGCAAGTTAGAAAGCAAGCACAAGCACAGTATCAAAAGGCATATGCTTAAGGTACACAAGAGAGAGTGGAAAGAGGAGGGGGCTACCGAAGTCTTGAGTCAAAATGATGAAACTAACGTGGAGTCAGATGATGGTAAAGGTGAAAATTATATGATGAAATTTTGTGAGATGTTAAATAGAATGGATTATGAACGTGCAGAAAAGGATCAGGAATGA
- Protein Sequence
- MKKEPTENQQDCKEKPIVEGDPLIVNNEESPVNQEASANEGPPINPKTPTIYLCEVCSFQTKYKKGLKSHSILHKDLTEIELFPCTFCAHVSKRKTDLKQHMLKHKLNKDTILRCTQCPFETSYKKSLLIHEYNHKNAWEKENFNCDFCQFTTKYESYLRRHTKNMHGVLSPPKPKKPKPPVQHVKKTVIPKIYKCEVCSFQTKYKSSLKDHSITHKNIMEIEVFPCSQCPHVCKRKSDLRQHMRKHDSNKNNILKCSKCSFETFYKKSLKIHEMNHKNESEIVMVSCELCGFQTKYKDSLRKHKRVMHGNKNRPVKRTTNKKLMRFLSKKKVVNNDVSNDFADVLDSPVKEEPKETPGFVCEVKMEPEETKVEPQGIKFEVKPTKVRAKKIIKIRPKKTTKTKREGSKDAENPIMFKCEICSFKTKYKKSLKDHGIIHKDLTELDLFPCTVCGHVCKRKSDLKQHMLKHDSTGATILKCDQCSFETVHKKSLKIHELSHRNDAELELFTCEVCQFQSKYKDSLRKHKKVMHGNELFACSICQYQTRHKNNLAEHILRHRVVETDLFYCSEPSCQYQSIRKADIKKHALIHKSFDQITAFQCHTCNFKCKRKSELEKHFAFKHRPQEDLPKFTCEVCSFTTKYRENLLRHQMIHKDDQDCKMSICEFCSYTTRHKDNFKQHLNTHKSMEEVKSYKCQMCKLESKHKHSIKRHMLKVHKREWKEEGATEVLSQNDETNVESDDGKGENYMMKFCEMLNRMDYERAEKDQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -