Basic Information

Insect: Oxystoma pomonae
Gene Symbol: RREB1
Assembly: GCA_963921995.1
Location: OY998163.1:108585493-108592065[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0002 0.028 16.1 0.5 1 23 70 92 70 92 0.98

2 16 0.0001 0.014 17.0 1.3 1 23 105 127 105 127 0.98

3 16 0.00033 0.046 15.4 6.6 1 23 133 155 133 155 0.98

4 16 1.4 2e+02 4.0 0.2 1 23 215 239 215 239 0.84

5 16 0.027 3.7 9.4 0.2 2 23 245 267 245 267 0.95

6 16 0.35 49 5.9 1.6 1 21 313 333 313 334 0.92

7 16 0.077 11 8.0 0.1 1 23 462 484 462 484 0.96

8 16 2.9e-05 0.0041 18.7 0.8 1 23 493 515 493 515 0.98

9 16 0.00043 0.06 15.1 2.0 1 23 521 544 521 544 0.97

10 16 0.00064 0.09 14.5 3.1 1 23 924 947 924 947 0.97

11 16 0.00053 0.074 14.8 0.4 2 23 1151 1172 1150 1172 0.97

12 16 0.13 19 7.2 6.3 1 23 1178 1201 1178 1201 0.97

13 16 0.0063 0.89 11.4 1.8 1 23 1231 1255 1231 1255 0.94

14 16 0.71 99 4.9 2.8 1 23 1319 1342 1319 1342 0.95

15 16 0.013 1.9 10.4 0.2 3 23 1388 1408 1386 1408 0.94

16 16 0.008 1.1 11.1 5.9 1 23 1414 1436 1414 1436 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0002	0.028	16.1	0.5	1	23	70	92	70	92	0.98
2	16	0.0001	0.014	17.0	1.3	1	23	105	127	105	127	0.98
3	16	0.00033	0.046	15.4	6.6	1	23	133	155	133	155	0.98
4	16	1.4	2e+02	4.0	0.2	1	23	215	239	215	239	0.84
5	16	0.027	3.7	9.4	0.2	2	23	245	267	245	267	0.95
6	16	0.35	49	5.9	1.6	1	21	313	333	313	334	0.92
7	16	0.077	11	8.0	0.1	1	23	462	484	462	484	0.96
8	16	2.9e-05	0.0041	18.7	0.8	1	23	493	515	493	515	0.98
9	16	0.00043	0.06	15.1	2.0	1	23	521	544	521	544	0.97
10	16	0.00064	0.09	14.5	3.1	1	23	924	947	924	947	0.97
11	16	0.00053	0.074	14.8	0.4	2	23	1151	1172	1150	1172	0.97
12	16	0.13	19	7.2	6.3	1	23	1178	1201	1178	1201	0.97
13	16	0.0063	0.89	11.4	1.8	1	23	1231	1255	1231	1255	0.94
14	16	0.71	99	4.9	2.8	1	23	1319	1342	1319	1342	0.95
15	16	0.013	1.9	10.4	0.2	3	23	1388	1408	1386	1408	0.94
16	16	0.008	1.1	11.1	5.9	1	23	1414	1436	1414	1436	0.98

Sequence Information

Coding Sequence: ATGCAAGGGACAGTATGCGTTCCCAAAAATCCGCAGCAAGGCTCATCCCCACCACAGACTAGAGAATTGACGAGTATGGATGAGTccaaagaaattgaaaattccAACAGAAGCCAACAAAGCGACTCTGGCTTTTTTTCCACGACAGCCAACACCACCAACTGTGACTCTGACAATCGTAGTGACTGCAGCTCTCCcgaaagaaaatatatttgcCCCATTTGTGACATGACGCTAACGGTCTCTCATGACTTTACTCTGCACATAAGATCTCATAACAATGCCTCCGAGGAGCACAGCAACGAAAATGGatttacctgtaaaatttgCCATAAAATACTAAGTTCAAGCTCAAGTTTAGATCGTCATGTATTAGTGCATAGTGGGGAGCGGCCATTCCATTGCAAATTTTGCGGTGACACTTTTACTACTAATGGAAATATGCATAGGCATATGAGAACACACTCTAATAAAGCCGATAGCTATGAATCGGATGGTAGCACTGAAAGTGGCAGTTCTAAAAGTACtgagtttaataataataaagttgaCGGAGAGCTAAACAACAACAAGAGAAAGTTAAACTTGGAAGATCCGCCTAgtaaaagacaaaaatttattgaaaagtCTGACacgcaaaattttaaatgtgcAGTATGTGAAAGAGATGATTTTACTTCAGTCCCAAATTTAAACAGTCATATGAAAGACAATCACCCAGAATATCCAGCAACCTGTGGCGTTTGCAAACAAGTGTTTATCAACAATAAACTTTTAGGTATCCACGAAAATATGTCCCATGACATTACTCCACACAAAAATACCGTTCCTGGTTTTAAGGATTTAACTTTTGTGGATTTCACTAGCAATAAATTTCCTGTTATTGCTCAGTATGAATGTGAGGCTAACATGCATACAGTTTCCAATGGTTTAAAGTTCCAGTGTAACAATTGCTCAAGAGCTTTTCCTTGCTCAAGTTCCTTGGACATACATAAGAAAAATTGCATTGAAAAATCCAGTGAAATCTACACGACACAAATTAAACATGTTTCTGAAGATGAACTAAGACGGCGTGATTTTTTTTCTCGACTTAATTTACAGAACAACCATTCAGAAGAATATAATTCTCCACTCCAATTACCGGATACTCCGAAAAAGTTAAAAGAGCAACTTGTGAAAGCAATGGATAACACTAAGGACTTAGCTGACATTCAATCAATTTTGTCAAacattaatttacaaaaaatgcaaaataaaccTAATGAACCAAAAGAAGATAGCGAAAAATCGAATTTGGATCTTGACATGAGCAAAAATGAAGGAGAAGAAGAAGCGCAAGATTCATTTGCTattgaatttagaaaaatgaaGTTGCGAGGAGAATTTCCATGTAGATTGTGCACAGCAGTATTTCCTAACTTACGTGCTTTAAAAGGCCACAACAGAGCTCATCTTAATGGTAACTCGAGTGGAacttatttttgcaatatgtgtCCCCATTCTTCAGTTGATAAGGCTGCTTTAATTCGACATATGAGAACCCATAATGGTGATAGACCTTACGAGTGCGCAATTTGTAATTACGCATTTACTACAAAAGCAAATTGTGAAAGACATTTAAGAAATCGACACTCCAAAACAACAAGGGAGGAGGTTAAGAAATCTATTATCTACCATCCTTCCGAAGATCCTACTAATGAAGATCTCAATAAACTAAACCTTAAGATGGATCACAAAAATTCAAGTTTTAATTCTTCGACAGAAAAAGAAACAAGTCCAGTTAAAATACATTGCTCTACTCCAAAATCCCAAAAACCTGATGTAGCCGTAAAGCCAACAGGCATTCATTTAATTCCTGACCTTCAAAAATTACAACCTTCGGGACTTTCCAACTTGGACTTTTTAAGAAACGTCAATATCAAACAATTTAGAGAACAAAATGTATATCAAAGTCCTATTTCCAATATTTTACCCCAATCTATTGAAATATTTCCTACCAAATATGCCAACAACAATTTGTCTGCAGAAATCATTACGCCACCCAGACTTCCCACAAAAATATTCGTGCCACAACGAGGAGAGTACTATGATAATAATTCTGAAGATGTAGCTCTCGACCTAAGTACCAAAAAACTCGAAACTTCGGAAGATGACACACCTGAAGATCTTTCAAAGAAAGAATCCGATCATTCACCAGAAATTCCTaaattttcaagaaatattACAGAAATATTACATCATCAGTTATTAAATGCACAACCAAAAATCGATCCAGCAGCTTTATATGCAACTCAATTGGCACAGATCTATCGCAATGGATTTCCAACATGGCCAGGATTCCCTGTAAATCCTTTATTATTTTCGGCACTTCCAGGAAATCTGGCTCAAAACCAAcaggaaattataaaagaacgaATGCAAAGATTTCAGTTATATGGTGGATCTCTTATCTCAGACGAATTTAAATCTTCGCTAAATCATACACCTCCTCAGACAAGGGCGCCTCTTAATTTAGAGCCTCTAAAAATTCGCACTGATCTTACCACCGATGTTATGACCGAAAGTAAGTCCAAAGAATTTATCAATACCAAAGATCTGACACCAACAAGTTTGACTCCGGATATTGAACACACTGTCAAAGTTAATAGTCCAGTTCCAAGCTTATCCAACTCGGACATAATGCATTCACCAAACTCTGTCAAAATGGTGATTAAAAATGGTGTTCTAAtgccaaaacaaaaacaacgaAGATACAGAACTGAGCGTCCATTTACATGTGAACATTGTTCTGCTAAGTTTACATTACGCTCCAATATGGAAAGGCATATCAAGCAACAGCATCCACAATATTGGTCCCAGCGTCATAGAAACAACACAATTCCTAGTaacagcaaaaaaattattggaatGCCACTGAAACCCTATGAGCTAagtgtaccaaattttgaaatgtCAAAGTTATATGATTATGCAGAATCTAAAGATCATATTAGCGAAAAACTCAAATATGCGGTTCTCACTCAACAACTGAAAATGAACgcaaaagaaaacaaagaaataaagaaaGAGGATGATGAGGATTGTGCACTAGTGATTGACGAAAACGAAGAAAAACTACACGACTTGAGCATTCGTAATCCCAAAGAAAACTTACCCATTAAATCTGAAAGAATATATGAAAACTTTAAACACGAAGAAGATCTAGTACCAGTGTCAAGACTTTTGGATAATGCTTCTCAACAAcaatttaaacagttttttaagCGAGATCCAGAAGAGTCAGAGGTTGGTGGTGTAagcgaagaagatgaagaaggtTTGGTTGCAGCCGGCAGTACCAGCGAGGAAAATATCTCTGGAACTGATGAAAACAGatCTGAATCAGAAACAGCCGCACCTCCCGCTCCAGTTAAGAAGCAATCCGCCTATTCACTGGCCCCTAACCGCGTCAGCTGCCCCTATTGCAGTCGCAAATTTCCATGGACATCCTCTTTGCGCCGTCACATCTTAACCCACACTGGACAGAAGCCTTTTAAGTGCAGTCACTGTCCTCTTCTGTTTACGACAAAATCAAACTGTGACCGGCATTTACTACGGAAACATGGGAACTCAGCTACGACCATATGCAGCAATGAATCAACAGCAAATGGTAGTCTTAACCATTTGCTTAGGAACGTTCCCGAACGCCCGTTTAAATGTTCACTTTGTCCCAGTAGCACTTTTTCAACATATTCAAACCTAAAGAAACATATCAGTGAAAAACATTCCTTAGGTGCTCAAAGCGATGAAATTAAAGCTCAAGGTTACGAAGCAGGTAGCTCAGAAGACGAAAAAGTTAACCAACCTGAAGCAAAAAATGAATGGTCTCATTCAGCGTCTTTTCCTAAATTTATCGTTCGTACTGAAATTGAGTCGAGTAGCGCAAACAATCAAGTGCCGAACTCAGACCTGCCTTTCAAATGTCATTTGTGTGAAGGTTCTTTCTGTGAACGACAAGAGGCTCTGGATCATATTCGTGACAAACATGCATCCGAGTATGaccttttaatgtcaaaaaatgctttagaAGCAAACGCCACTGTACCCGATGATCCCACGCACAACGAAGATGATGAAGATATCCGCGGGAAATTTCCCGATTACTCTAACCGCAAAGTAATTTGTGCCTGGTGCATGCGCAGATTCTGGTCAGCTGAAGACTTGCGCCGCCATATGCGTACCCATACTGGCGAAAGGCCTTTCAGCTGTGACATCTGTCGCAGACGATTTACTTTGAAGCACAGCATGTTACGCCATAGGAAAAAACACACACTAAATCCAACCGACAACGACGCTACTATCAGTGACGAAGATGGAAACATTCTCACTTCTGCTGAAAAACTATTAGTGGAAAAGAAtgaaaaaaacaacgaaaaaacTGATGAGTCTGATGGAAACGAAGGAGACCTGATTAGTAACTTATTAGGGATAAGAGATAGGTCTATCATAGACCGTGTTTTAGATGCTTCCGCTGATGATGCAGCTAAGCTTTTAGGGGTTAAAAACAATGctaaataa
Protein Sequence: MQGTVCVPKNPQQGSSPPQTRELTSMDESKEIENSNRSQQSDSGFFSTTANTTNCDSDNRSDCSSPERKYICPICDMTLTVSHDFTLHIRSHNNASEEHSNENGFTCKICHKILSSSSSLDRHVLVHSGERPFHCKFCGDTFTTNGNMHRHMRTHSNKADSYESDGSTESGSSKSTEFNNNKVDGELNNNKRKLNLEDPPSKRQKFIEKSDTQNFKCAVCERDDFTSVPNLNSHMKDNHPEYPATCGVCKQVFINNKLLGIHENMSHDITPHKNTVPGFKDLTFVDFTSNKFPVIAQYECEANMHTVSNGLKFQCNNCSRAFPCSSSLDIHKKNCIEKSSEIYTTQIKHVSEDELRRRDFFSRLNLQNNHSEEYNSPLQLPDTPKKLKEQLVKAMDNTKDLADIQSILSNINLQKMQNKPNEPKEDSEKSNLDLDMSKNEGEEEAQDSFAIEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNSSGTYFCNMCPHSSVDKAALIRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHSKTTREEVKKSIIYHPSEDPTNEDLNKLNLKMDHKNSSFNSSTEKETSPVKIHCSTPKSQKPDVAVKPTGIHLIPDLQKLQPSGLSNLDFLRNVNIKQFREQNVYQSPISNILPQSIEIFPTKYANNNLSAEIITPPRLPTKIFVPQRGEYYDNNSEDVALDLSTKKLETSEDDTPEDLSKKESDHSPEIPKFSRNITEILHHQLLNAQPKIDPAALYATQLAQIYRNGFPTWPGFPVNPLLFSALPGNLAQNQQEIIKERMQRFQLYGGSLISDEFKSSLNHTPPQTRAPLNLEPLKIRTDLTTDVMTESKSKEFINTKDLTPTSLTPDIEHTVKVNSPVPSLSNSDIMHSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSAKFTLRSNMERHIKQQHPQYWSQRHRNNTIPSNSKKIIGMPLKPYELSVPNFEMSKLYDYAESKDHISEKLKYAVLTQQLKMNAKENKEIKKEDDEDCALVIDENEEKLHDLSIRNPKENLPIKSERIYENFKHEEDLVPVSRLLDNASQQQFKQFFKRDPEESEVGGVSEEDEEGLVAAGSTSEENISGTDENRSESETAAPPAPVKKQSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTICSNESTANGSLNHLLRNVPERPFKCSLCPSSTFSTYSNLKKHISEKHSLGAQSDEIKAQGYEAGSSEDEKVNQPEAKNEWSHSASFPKFIVRTEIESSSANNQVPNSDLPFKCHLCEGSFCERQEALDHIRDKHASEYDLLMSKNALEANATVPDDPTHNEDDEDIRGKFPDYSNRKVICAWCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHTLNPTDNDATISDEDGNILTSAEKLLVEKNEKNNEKTDESDGNEGDLISNLLGIRDRSIIDRVLDASADDAAKLLGVKNNAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -