Opom010516.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- cah-5
- Assembly
- GCA_963921995.1
- Location
- OY998165.1:17185090-17233620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.19 26 6.8 0.2 2 20 395 413 394 415 0.94 2 10 0.9 1.3e+02 4.6 6.3 1 19 423 441 423 445 0.91 3 10 7e-06 0.00099 20.7 1.2 1 23 451 474 451 474 0.98 4 10 1.6e-06 0.00023 22.7 0.3 1 23 480 502 480 502 0.98 5 10 6.8e-05 0.0095 17.6 0.2 1 23 510 532 510 532 0.98 6 10 7.9e-07 0.00011 23.7 1.0 1 23 538 560 538 560 0.97 7 10 0.00011 0.016 16.9 3.2 1 23 566 588 566 588 0.94 8 10 0.00053 0.074 14.8 3.5 1 23 594 616 594 616 0.97 9 10 0.0048 0.67 11.8 0.7 1 23 622 644 622 644 0.98 10 10 2.4e-05 0.0034 19.0 3.3 1 23 650 673 650 673 0.98
Sequence Information
- Coding Sequence
- ATGGTTCACTATGCCAAAGAATCAGGAAATCTGAATGAAGCTCTCAAAACTCCTCAAAATGTTGCTGTGTTGGGATTTCTTTTTGAGATAAGCCCAGATGATGACGACGACTTCGCCCCCCTTATGGAGATCCTGGGCGCTCTTAAAGATTCGGTGGGAAAGGTTCAAACTTTGACGAAATTTAGCGCCAAAAACTTTATGCCCAGAGATAGAGCTGGTTTTTTTAGATACGACGGTTCCCTGACTACTCCCAACTGCACAGAGGGAATTGTATGGACGGTGTTTACCAATACTTTGAGGATATCCAGACGTCAGGTGAAAGAGTTCGAACAGCTGAGATCAGGTAATAATGAGCTACTGACGTTCAACTACCGAAATCTGCAGGCCACAAATGGAAGGACCGTCTACTTGAGGGAAAGTCCGATTGGCCAGTTCTTGAATAGCGGAGCGAGTAATCAAAGAACCTTGGCTGTGCTCATTCTACCGCTCATAATCCTAGTCCTtgCTAACCTGATTTCCACATTACAACAAATGGAAAGCCATTCAATGGAAATTTCCCACCACATCAAATTAAAGCCAACATGGTTGGAAACATTTGCGGACATGAAAGAAGTTGATATAGCTCCAAGTCTAATGCATGAATTTGATTCAAACTCTGAGAACTTTGATACACTTCAAATGCATAACCCAGATGATTTAAAACATGATAGTGATGATTTTTCTCAAAACTCCACGAACTTATCACACCTGGACcattttggtttaaattcagATCGTTTTGAACAAAACTCAGAGGATTcagatcatattttaaaaagtgacacTAAAAAGCATAGAAGGAAGGCTTCTGCACCTCAAAGAGCTGTACCAAAAGAGGCTTTGATCAACGCAAATCATAGTGAAGTCAATCATTCTTCAGAGTCTTCCCAAGATGAGTTAAGATGCCAAAAACTGTCAAATCTAGAGAAACTGCTGGATTCAGAAGACCTAAATGACAATTGTTTGATGGATGATCAACTTGACCAGTTGATGAGTTTAGAAAATGGAGATTGGAAAAAGTTTCTGAATGAGTTTGAAACGCAGGATATTTTCAAAGATCTGCAGGAAGAGGGTGATGGTGAGTCTCTCGAGGGGGAAATCTTCTCGAACGTAAAAGAGGAATTCAAAGCCCACTGGGGCGTCAAGTGCAACATGTGCGAATCGGTGTTTCCGTATAAAACCGAGTTCGACAAGCACTACGTGTCGAGCTACAAGTCTAGACCAGTGTACACTTGCACTTTCTGCGATAAGTCCGTCGATAAGTACTCGACGTTTCGGTCGCATTGTTACAGGCACATTACGGAAGGCAGGTACAAATGCAAACAGTGCTCAAAGGGTTTCAGTCTTCAGTCGATGCTACAGGTGCACATCTTGACGAAACACACCGAGTGCAAACCGTTTATGTGCGAAGAATGCGGCCGAAGTTTTGTCACCAAACCTGGCTTAAGAATCCACCTGAAGAAGCACAAGATTGAGGTTAAGGAGGATTATCCATGCGTCGAATGTGGAAAAGTattacacACAAGAGGTGGCCTGACCTCGCACATGAACGTGCACCGGCTAGGTCGCAGGTTTATGTGCGATATCTGCGGGAAAACCTTCACGCAGAAAGTCAACATGCAACAACACGTAAAACAGCATACAGGAAACAAACCGCACGCGTGCAAAATGTGTGGGAAAGGTTTTGCCGAGAGATCCCACTTGTCGAGGCACTTGAGTTTTCACAGCGAAGAACGGCCGTTCAAATGCTCCATTTGCAACAAAATGTACAAAACCGAGCGGTGTTTAAAAGTTCACAGCCTAGTTCACGCCGATGCAAGGCCGTACACTTGCGAGGTTTGCAGGAAAGGTTTTTTGAGCAGCACAAAGCTAAAaCAACATGCCAACATTCACACGGGAGAACGGCCATATAAATGCAAGTACTGCGAAAGAAGTTTTACAAACTATCCAAACTGGTTAAAACATACAAGAAGAAGGCACAAAGTGGACCACAAAACAGGACAAGAATTATCAAACCTCCGACCCCAAACTGATGTAATCCCAGAACTAATCGAAAATAACTTCAAACAAGATGCGGATGAAGTACCTCAAAAGAACGTTATTTTACCTTCTAATGTActtaaaatcgaaaaagaagAATTAGACCCGGGTTCCAAAATTGATGGTGGAGGAGCCAGTGCAGAAGTAAAGAGTAAAGTTTCAAATTTAAGTGAAGTCTTACTGGAAGCTAAGATTGTCAAACAACCTCTTTTGAGCGAAGTATTTTCGGAAAACGAAGATACGCTTGATAGGACTCACTTAGACATCGAAACCAATCTCATGTTGGATAAAAACTTGGATTTAGACGGGAAGAGTCTGGTTTTAAACCACAAAAGTATGATTTTCGATGAAATACGACCCACTCTGAAAACCATCGATAAACTAGTTTCCGAGAAACTGATTGAAAATATGCATTTGCAAAACAATATTAGTGAGAGTTTGATGTTGAATGACATGAATTTTGACATAGTTTGGTGA
- Protein Sequence
- MVHYAKESGNLNEALKTPQNVAVLGFLFEISPDDDDDFAPLMEILGALKDSVGKVQTLTKFSAKNFMPRDRAGFFRYDGSLTTPNCTEGIVWTVFTNTLRISRRQVKEFEQLRSGNNELLTFNYRNLQATNGRTVYLRESPIGQFLNSGASNQRTLAVLILPLIILVLANLISTLQQMESHSMEISHHIKLKPTWLETFADMKEVDIAPSLMHEFDSNSENFDTLQMHNPDDLKHDSDDFSQNSTNLSHLDHFGLNSDRFEQNSEDSDHILKSDTKKHRRKASAPQRAVPKEALINANHSEVNHSSESSQDELRCQKLSNLEKLLDSEDLNDNCLMDDQLDQLMSLENGDWKKFLNEFETQDIFKDLQEEGDGESLEGEIFSNVKEEFKAHWGVKCNMCESVFPYKTEFDKHYVSSYKSRPVYTCTFCDKSVDKYSTFRSHCYRHITEGRYKCKQCSKGFSLQSMLQVHILTKHTECKPFMCEECGRSFVTKPGLRIHLKKHKIEVKEDYPCVECGKVLHTRGGLTSHMNVHRLGRRFMCDICGKTFTQKVNMQQHVKQHTGNKPHACKMCGKGFAERSHLSRHLSFHSEERPFKCSICNKMYKTERCLKVHSLVHADARPYTCEVCRKGFLSSTKLKQHANIHTGERPYKCKYCERSFTNYPNWLKHTRRRHKVDHKTGQELSNLRPQTDVIPELIENNFKQDADEVPQKNVILPSNVLKIEKEELDPGSKIDGGGASAEVKSKVSNLSEVLLEAKIVKQPLLSEVFSENEDTLDRTHLDIETNLMLDKNLDLDGKSLVLNHKSMIFDEIRPTLKTIDKLVSEKLIENMHLQNNISESLMLNDMNFDIVW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -