Opom033368.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998171.1:10633668-10675773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0009 0.13 14.1 1.3 1 23 54 77 54 77 0.94 2 12 0.42 59 5.7 0.1 3 23 129 150 128 150 0.95 3 12 0.093 13 7.7 1.6 1 23 181 203 181 203 0.97 4 12 4.2e-05 0.0059 18.2 1.5 1 23 209 231 209 231 0.97 5 12 2.4e-06 0.00033 22.2 0.6 3 23 340 360 339 360 0.98 6 12 9.6e-05 0.013 17.1 5.1 1 23 366 388 366 388 0.99 7 12 5.6e-06 0.00079 21.0 0.3 1 23 394 416 394 416 0.98 8 12 7.5e-07 0.00011 23.7 4.5 1 23 421 443 421 443 0.98 9 12 9.4e-07 0.00013 23.4 1.9 1 23 449 471 449 471 0.99 10 12 3.1e-05 0.0044 18.6 0.7 1 23 477 499 477 499 0.96 11 12 0.0001 0.014 17.0 7.3 1 23 505 527 505 527 0.99 12 12 0.00079 0.11 14.2 4.2 1 23 538 561 538 561 0.94
Sequence Information
- Coding Sequence
- ATGCTTACCCACAACAGTCAGGAAAAGAAAAAGACTAAAATTGGCAGAAAAATCAAGTTGAAAAGCGACTCCGACAGTGATTTTGACCAACCAGACATTGTAAAAATCGAGAGAGAAAGCTCTGATGATGGTTACCAACCAGAGACacCTGTGGCCTCTTTCAAATGCAACAGGTGCAAGATTACCTTCGAAAATCGGGAATTTCTAAACGAGCACATTTTTAACGCGCACCCGCGGGAAGACGCGCGCCTAGAAAAGGAAATGCGACTAAAAAAGAGGCTGAGAATTGGCCTGTCGAGAGGCGCAAGAATGGCACAGTTTTCACAGCAACAgGTTGACGCGGTGATAAAAAAGGCCCAGATAAAAATGAACGCTGCAGCCGACTGTCCCGTATGTTCCTTTAATGCAGTGAATACAAGGGCTTTGTCCACCCATATGTCCATAGTGcataaGGAAGAGAAACCAAAATGGTGCTATTTTTGCAATAAGCGCAACATTGAACATCTTAAAGAGCACAAAGAACTGATGCATTCGAGGGAATATGCGTGCGATTTTTGCggcaaaaatcacaaaaacgtTACAAATTATGTTGAACACCTTATGAGACACTCAGaatcgAAAAATTTCCCATGCGATCTATGCAAGAAGTCCTTCATAAGcgaaaaatatttggaaaaacacaaaaaattgcaCGAAGAAGTCCAAAACCTCGTGGAAGACGTTAATTCCTCGGACGACGACAAAAAACTGTCGGATTTGATTGAGAGAAAAGTCAAGAGTGACAACGGTGTCGAAGATATCGAGAACGAACCGGAAGGCGGTGATAATATAGCCGCCATCTTGGGCAGTGTGAAGGTGGAAATTGGCGAGGGCAAGATTAATGATGCTACCGATAAAATAGTTGAgaaactgCCAGCAAAAACCAAATATTGCCACGAGTGCAAGCGAACCGTTCAAAACCTGAAAAAACACTTCAAAAAATTCCACACCGCCTCCGACCCGGAGCCCCCCTCGTTGTGTCCGCAATGCGGGAAAATGTTCAAGAGCAGGGGTAAACTAAACATTCACCTCAGGTTGCACAGTGGCGTGCAGCCttacaaatgtcatttttgccCGAAAGCATTCCTTATGAATTCCCATTTGAAGTTGCACATTAGGACGCATACCAAAGAGAAACCGTACATCTGTCAAGTTTGCGCGAAGAGTTTTGCGCAAACTAGTATGCTGAGTACTCACATGAGAATTCACACCGGAAGACcacatcaatgtaacatttGTGAACAACGGTTCTGTAGGCCGTCGGAACTCCGAATTCATATGAGAAAACATACCGGGGAGAAGCCCTACGTTTGCGACCAGTGCGGCAGGGGATTTAAGCAAACCAGCCACCTGGTCGACCACAGACGGACCCACTTCGACGAACGGCCCTACAAATGTTCGTTCTGCGACAAGGCGTTTAAAAACGTGGCTACTTTAAAGGCGCACGAGTTTATTCACACAGGAACAAAACCCTTCAAATGCAGCAAATGCCCGTTTACGTGTAGAGTCTCTTATCACCTGACGAAGCACATGATGACTCACGACAGTGACAGGCCGATGTCCGACAAGCCGTACACTTGCGAAATCTGCACCAAGAATTTCCAGACCAAGGCACATCTGTTTAGCCATTTTGACAGatatcataACAGTTCTCAAAGTCATCAAGAAGAGGTGGTAATCACGGAGACCATTCCAGACGATGAGAAATTGGAAGaaaatgttagtttttatgcttaa
- Protein Sequence
- MLTHNSQEKKKTKIGRKIKLKSDSDSDFDQPDIVKIERESSDDGYQPETPVASFKCNRCKITFENREFLNEHIFNAHPREDARLEKEMRLKKRLRIGLSRGARMAQFSQQQVDAVIKKAQIKMNAAADCPVCSFNAVNTRALSTHMSIVHKEEKPKWCYFCNKRNIEHLKEHKELMHSREYACDFCGKNHKNVTNYVEHLMRHSESKNFPCDLCKKSFISEKYLEKHKKLHEEVQNLVEDVNSSDDDKKLSDLIERKVKSDNGVEDIENEPEGGDNIAAILGSVKVEIGEGKINDATDKIVEKLPAKTKYCHECKRTVQNLKKHFKKFHTASDPEPPSLCPQCGKMFKSRGKLNIHLRLHSGVQPYKCHFCPKAFLMNSHLKLHIRTHTKEKPYICQVCAKSFAQTSMLSTHMRIHTGRPHQCNICEQRFCRPSELRIHMRKHTGEKPYVCDQCGRGFKQTSHLVDHRRTHFDERPYKCSFCDKAFKNVATLKAHEFIHTGTKPFKCSKCPFTCRVSYHLTKHMMTHDSDRPMSDKPYTCEICTKNFQTKAHLFSHFDRYHNSSQSHQEEVVITETIPDDEKLEENVSFYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -