Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998168.1:93878251-93909542[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.039 5.4 8.9 2.8 2 21 164 183 163 184 0.92

2 12 0.0002 0.028 16.1 1.2 1 23 215 237 215 237 0.99

3 12 0.00027 0.038 15.7 2.7 1 23 256 278 256 278 0.98

4 12 0.17 23 6.9 1.4 1 23 314 335 314 335 0.91

5 12 1.8e-06 0.00025 22.6 2.5 1 23 341 363 341 363 0.97

6 12 6.4e-05 0.009 17.7 0.8 1 22 369 390 369 390 0.96

7 12 6.9e-05 0.0096 17.6 2.4 1 23 397 419 397 419 0.98

8 12 6e-06 0.00084 20.9 4.6 1 23 425 447 425 447 0.98

9 12 3.6e-05 0.0051 18.4 3.0 1 23 453 475 453 475 0.98

10 12 4.9e-06 0.00069 21.2 1.2 1 23 481 503 481 503 0.98

11 12 2.3e-05 0.0032 19.1 0.1 1 23 507 529 507 529 0.98

12 12 0.0001 0.014 17.1 0.1 1 23 537 560 537 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.039	5.4	8.9	2.8	2	21	164	183	163	184	0.92
2	12	0.0002	0.028	16.1	1.2	1	23	215	237	215	237	0.99
3	12	0.00027	0.038	15.7	2.7	1	23	256	278	256	278	0.98
4	12	0.17	23	6.9	1.4	1	23	314	335	314	335	0.91
5	12	1.8e-06	0.00025	22.6	2.5	1	23	341	363	341	363	0.97
6	12	6.4e-05	0.009	17.7	0.8	1	22	369	390	369	390	0.96
7	12	6.9e-05	0.0096	17.6	2.4	1	23	397	419	397	419	0.98
8	12	6e-06	0.00084	20.9	4.6	1	23	425	447	425	447	0.98
9	12	3.6e-05	0.0051	18.4	3.0	1	23	453	475	453	475	0.98
10	12	4.9e-06	0.00069	21.2	1.2	1	23	481	503	481	503	0.98
11	12	2.3e-05	0.0032	19.1	0.1	1	23	507	529	507	529	0.98
12	12	0.0001	0.014	17.1	0.1	1	23	537	560	537	560	0.97

Sequence Information

Coding Sequence: ATGGATTTACACGGCAATCATAGGACCTATGCTAGCATACAGCGCTGTCGTTTGGGGTCCAAAAGCACAACAAACAACAGTAGTCCGAAAATTGGAACAAATCCAAAGAATAGCATGTCTCTATACAACGGGAGTGCTATGAAAACCACGCCAACCAGAGCTATGGAGGTGATTCTTGGTCTCACCCCTCTTGACATTCACATCAAGGAGGTTGTTTTGATGACTATGTACCGTTTTCGCATGGTTGGCATAGAACCAGAAGTAGAAGCCGGTGAAACGAAACGACGTTTGTGGCGCGAAGGGCTTAACTTGCTCCCAATGCTACAGGCGAATACGGACTGCATTGCACCTCGCTTTGTTTTTCACAAGCCCTACAAAATAAGCATATCCAACACAGCAGAAGAACCGGTCATGGGAGgtgaAGTAAGACTTCTGGACGATAATGAATTTGAGGCGATCAAAGACAGATCCTTAGTCAGCGAAATATTGAGGTGTCCAGGTTGCActttaaaatttccaaatttgGCGCACTACCATAAACACAAATGTGTCAAGAAGAACGTGAGCGCTATGCTTAAGCCGAAACCAAAAAAACCAGCGGTCGTAAGTGAAAACCTACGGCAAGGCATTAAGGAAGGCAAATACACGTGCACCTTTTGTCAGATGAGATATCCGAGTTTGAAAGCTTTAAAAATGCACATGAAAATACATTTGGTTGAGGATGAATCAGGAAATATTGTGCCCAACACTGTAACATTGTCGCTCCATCAATGCGATATTTGCAACACGAAATTCCCGACTTTGAAGTCGCTCCGTCTGCATTCTAAAATGCACAAGCCGGTTCCGGAAAAGGAGGTCGAACCTCCGGTGGACTATAACATCATGGGCGAAACCGAAGTTAACGAAGAAGGCGACGCTATGAATGTTAAGCACGAGATGTTCCAATGCCAAGAGTGTTTCAAGGAGTTTGACGTCAAGTACAAAGAGGCTCACTTACAGTCGCACAACGACGAGTCGGAGTACGACTGCTCGATTTGCAATAAGAAGTTTCACTCGCAGTCCAATTTGGAGATGCACATGAAAGCTCATTCGGATGTGAAGAAGTTCTCATGTTCGTATTGTAAAAAGCCTTTCAACACCTACGAAGCCTTGGAGAATCACACGAAGACCGATTGTTTGCAGAAATCGTACGAATGTCAATATTGCGGCAGGCGGTTCTCCAAACCCCATGAAAAGgTCAAACATGAACGCATCCACACCGGAGAAAAACCGCACGTATGCCAAGTTTGTGGAAAATCCTTTCGAGTTAGCTTTTGTCTCACTCTTCATATGCGAACTCACACTGGCTCAAGGCCTTACATGTGCAACCAATGTGGTAAAAGGTTTAAGTCCAACGGTGTCTATGTCCACCATTTGAAGACTCATTCGGACGTGAGAAATTACAAGTGTCCCTATTGCGCCAAGGCTTTTAAGACGTCTGTGCAACTGTCGAGCCATAAAAACAGTCACACAAAACCCTTCTCTTGTACCGAGTGCAACCGACCGTTTGCCTCTCTCTACGCTGTCAGAGCACACATGGCGACTCACAAAAAGGAAAACAATCTGAAATACGATTGCTGGCTCTGCGGCGCCACTTACGCTAGATCGTTCGCTTTGAAGGATCACATGAATTCGGTGCATATGGACTACAGTATCACAGGCGAGACACAAAACGGAGAAGCTGTAACGATCCATGGCGAGCCAGAAGAGGTAGAATATGAGCAAGTTGAAGAAGACGAAGAAAGGATGCAAGGCGAAGAGAACGAAGTGACTGAAATAGTGACAGAGGAGATAACTAATGTTGAAATGGTCGAGTCTTAA
Protein Sequence: MDLHGNHRTYASIQRCRLGSKSTTNNSSPKIGTNPKNSMSLYNGSAMKTTPTRAMEVILGLTPLDIHIKEVVLMTMYRFRMVGIEPEVEAGETKRRLWREGLNLLPMLQANTDCIAPRFVFHKPYKISISNTAEEPVMGGEVRLLDDNEFEAIKDRSLVSEILRCPGCTLKFPNLAHYHKHKCVKKNVSAMLKPKPKKPAVVSENLRQGIKEGKYTCTFCQMRYPSLKALKMHMKIHLVEDESGNIVPNTVTLSLHQCDICNTKFPTLKSLRLHSKMHKPVPEKEVEPPVDYNIMGETEVNEEGDAMNVKHEMFQCQECFKEFDVKYKEAHLQSHNDESEYDCSICNKKFHSQSNLEMHMKAHSDVKKFSCSYCKKPFNTYEALENHTKTDCLQKSYECQYCGRRFSKPHEKVKHERIHTGEKPHVCQVCGKSFRVSFCLTLHMRTHTGSRPYMCNQCGKRFKSNGVYVHHLKTHSDVRNYKCPYCAKAFKTSVQLSSHKNSHTKPFSCTECNRPFASLYAVRAHMATHKKENNLKYDCWLCGATYARSFALKDHMNSVHMDYSITGETQNGEAVTIHGEPEEVEYEQVEEDEERMQGEENEVTEIVTEEITNVEMVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -