Opom027269.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998169.1:27160132-27169099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00029 0.041 15.6 1.5 1 20 217 236 217 238 0.95 2 12 0.03 4.1 9.3 1.0 2 23 266 287 265 287 0.96 3 12 0.00035 0.048 15.4 4.2 2 23 845 866 844 866 0.97 4 12 5.3e-06 0.00075 21.1 1.5 1 23 872 894 872 894 0.97 5 12 1.6e-05 0.0023 19.5 4.3 2 23 900 921 899 921 0.97 6 12 0.0017 0.23 13.2 0.2 2 23 928 950 927 950 0.94 7 12 2.7e-05 0.0038 18.9 0.2 2 23 954 975 953 975 0.96 8 12 3e-06 0.00042 21.9 1.8 1 23 985 1007 985 1007 0.96 9 12 8.8e-05 0.012 17.2 0.1 1 23 1013 1035 1013 1035 0.98 10 12 6.3e-06 0.00088 20.8 2.0 1 23 1041 1063 1041 1063 0.97 11 12 6.7e-06 0.00094 20.7 2.3 1 23 1069 1091 1069 1091 0.97 12 12 0.00017 0.023 16.4 3.5 5 23 1100 1118 1097 1118 0.95
Sequence Information
- Coding Sequence
- atgGATACTTTTAAACCAGATCTAGATGAGTTCTATaatcaaaatgttttattaagacCTGACGTAGATCCGTTTATGGTATTTTCTGAAGAAGTAGATATGAAAAGTATTTCAGTGcctttaaatgttaatatagAACCAAGTCAAGTCAAACCAGTAGGTAACCCGGTGCCAGTAAATAAAActgcatttttgaattataatgTTTTGGGAGCAATACATCCTACTTGCAACGATTTAGGTTTTGCTGGGGAAACTGCACCACCAAATTACATTCAAAATAGTGCTACCATTGACATGAACTTTAATATAGCAACTTCTAACTTTATTGATACCGATCATATGGAATATATGGATCACTTTTTAGCTATTCCAAATACATCAAGTGATAATGTAAGCTTCTCAAATCCAGAACAGTCTACTTGTCTAAAAACGGGCCCCAATAATGCCGTTCGAGTTGACCATTTTATATGCAATCGCTGTGATAACATCTTCCTATCTATTGAGGCTTTCAGTCTTCATATGGTGCAGAAGAAATGTTCTATAATTGGAAAGTGCAATTTGTGCCGTGCGATTTTTCCAAGGAACGGCTTCATAATCCACGTGGTCCAACACGAAGTTGACAGTGCTATCGATCGTAAATTAGGATACATCTGTGATCAGTgtggtaaaatatttaaagattgTTTTCAGTTAAAAACACATACAGACCTAGAGACAGGCTGTGGAAAAGTAGTTGAATGCCAATTAAGTAAAAGTATTGATCAGAAACCAAATACTACTGGAAAGACATCAAGTTGTGAAATTTGCTACGATAATTTTTCGAGTCACAAAGATCTTGAGGACCATATAAAACTTCATAGTCAAATCGAAAATATAACAGCACCGGAAACCATCATTATAGACGATGATGACGAAACTGATTCTGAGAGAGATAAACTTGATATTTTTCAGGAAGAGTCAACAACTCAATTAGCAGCTATACAGAATCAAGATACTAAAGAAGAAGGAAGAGTTTTAAATCCCTTCGTATCAATTAATAGGACAGCGCAACCAATTTCTATAGagaaaaacgataaaaatttaATCAATCAGCAGCtaagtaaaaattgtaaaataatgaattcaTCGTCACAGTTTGCCCATAAAGATATCATAGATAATACTGCAATTGTCAATAAAGGTTTAATCAAGCCCAAGTCCTTTGCCAGACTTTTGGGTACCCCAAATTCGTTAATTAAACCATTAGTGTCAGTACCTGTTCAGTCATCCTTTCCTTGTTCTAAATCTACGTCTCTTACCGAGCAAATACAGAATATGTTGTGTGGAATTCCTGCCCCAACTTTATCAGTAAAACAGACAGATACTCCGTTAACTCTTGACGAGTCGTTGCTAAAGGAAAAGCTTAATTCGTCCAAAACTAATATAGTGAATACTAGTTTACCTGTTATTCCTGGTATGCCAGAAAAATCTGGAAATTTTGTTACGCTGTCAAATGATACAGACAAAAACATTCTACTTTTTGATCAGTCTTTTTTGCAAGCACCACAAGGAAGAGACAACGTTGGAAATTATGTTATTTACCAACCAACTGCTCAAACTGTAGCTAATTCTCCATCACCTGAAGGATCATTTAATTCAATCGTTATTAATCAAAACATTAATAGTGAACAAATCGTAGTTAAATCATCAAACACATTTGGAGGTATCGTTTTGAATGCAAATCCTGGGTCACTGCAATCTCCAATACCTAACGCGAGAACCAAATTGATACAAACTGGGAATGCTCAACAGATACCCCAAAATAATGGAAAACAATTCAAGATAAATATTTACCTAAACTTTATCTATTTTAGATCGTACGATATGTTTTTTAGGTCTACAGACACAACTTTATATACAAACTATAATATCGGCTTAGTTAACACAAGCAAAGAGTTCGCAGATTGTAGATATTTACTAGAAACTCTAGAGTCTTCGAAAGAAAGAATGGGTGCCAGTAATTTAACTAATTCTGTAGTTGAAAAGTGTCATTCCTCAAGTTATAGAAAAACCAATACACAAAGTAATCCAATTGAAACTAACTATATAGTTAAAGAAGAGTACGATATAAGTAGCCAAAAGAGTTCAGAAAGTATACCGGTTGATCAATGTTACTCAGATTCAGTTATTGAAGATTTTAACAACATAAActatcaaaaaatcagtttaCAAGTACAACAACTTCAAGTTCACTCAGTTGTTGAACATTTTGATACTCTGAATTGTCGAAAAATAATTACTGAATCAGATCATCTCCAGACAACTGATGCAGATTTGCTAAATTTATTATCAAGTGAACAGGGATGCAGTTCCATTTTTAACAACATTGTTATAAATGACCAAATTGATCGGCTTATTAGCCATGAAACTGCAGCTATTCAACATTcaaaagcaaattattttatagaaaatacgAATActggagatttaaaaaaagtaactaacaattttaaagataaagttTTTAACCAGCCTGATAATGGTTGTTTAAAATGTAATCACTGTGATAGTATTTTTTCCTCTAGAAAGACTTTAAGAAAACATGTTAATAGACATACCCAGGAACGAAAACATCCTTGTGATATTTGTGGTAAGAGTTTTAAATATAACTATGAGGTGACAGCTCATAAAAGATCACATCAAAACCCATCACTACAATGCGAAGTTTGTTCGAAAATGTTTATTCATAAATCTCATCTTAATGTTCACCTTAAGAAGCATAAAAATTGTTACAGTGTGAAATGTAATATTTGTAATATTGACTTTAGTTCACAAGCAGCATATGCAAAACATAAATCCATATACCATTTCTCATTGGTTTGTGATATATGTGGTTTAAAGTTTAGCTCTTTATCTGCTctaaaagaacataaaaaaattcatgaaATTAATTATGGCCATGAAAGGAATCACATTTGTAATGTATGTGGAAAAACCTATATCCGAAAGAGAAATCTAAAGACTCATATTACGGTACATATGCGTTCAAAACCGTATGTTTGTAAAATCTGTGGTAAATCAGTCAGCAGTAAAGTCATACTTGAAACTCATATTAAAATGCACACTGGTGTAAAAGactttttttgcaatatatgTAATAAAGCATTTGCATCAAAGGAGTACCTAACTATTCACCACAGGATTCACGACGGAAATAAACCTTATGAATGTAGTATTTGCCAAAAGACGTTTAGTCAAAAAACTTCGTTAACAGTACATTCAAGATTTCACACTGGACAAAGGCCGTACAAGTGTGAATGTGGAAGGAACTTTGCTACCAAGAGTCACTTAATGAAACATTATAAAACGCATGAATTAAACGTTGATATTTCATATCCACTGCATACTTCTTTGCAATccttataa
- Protein Sequence
- MDTFKPDLDEFYNQNVLLRPDVDPFMVFSEEVDMKSISVPLNVNIEPSQVKPVGNPVPVNKTAFLNYNVLGAIHPTCNDLGFAGETAPPNYIQNSATIDMNFNIATSNFIDTDHMEYMDHFLAIPNTSSDNVSFSNPEQSTCLKTGPNNAVRVDHFICNRCDNIFLSIEAFSLHMVQKKCSIIGKCNLCRAIFPRNGFIIHVVQHEVDSAIDRKLGYICDQCGKIFKDCFQLKTHTDLETGCGKVVECQLSKSIDQKPNTTGKTSSCEICYDNFSSHKDLEDHIKLHSQIENITAPETIIIDDDDETDSERDKLDIFQEESTTQLAAIQNQDTKEEGRVLNPFVSINRTAQPISIEKNDKNLINQQLSKNCKIMNSSSQFAHKDIIDNTAIVNKGLIKPKSFARLLGTPNSLIKPLVSVPVQSSFPCSKSTSLTEQIQNMLCGIPAPTLSVKQTDTPLTLDESLLKEKLNSSKTNIVNTSLPVIPGMPEKSGNFVTLSNDTDKNILLFDQSFLQAPQGRDNVGNYVIYQPTAQTVANSPSPEGSFNSIVINQNINSEQIVVKSSNTFGGIVLNANPGSLQSPIPNARTKLIQTGNAQQIPQNNGKQFKINIYLNFIYFRSYDMFFRSTDTTLYTNYNIGLVNTSKEFADCRYLLETLESSKERMGASNLTNSVVEKCHSSSYRKTNTQSNPIETNYIVKEEYDISSQKSSESIPVDQCYSDSVIEDFNNINYQKISLQVQQLQVHSVVEHFDTLNCRKIITESDHLQTTDADLLNLLSSEQGCSSIFNNIVINDQIDRLISHETAAIQHSKANYFIENTNTGDLKKVTNNFKDKVFNQPDNGCLKCNHCDSIFSSRKTLRKHVNRHTQERKHPCDICGKSFKYNYEVTAHKRSHQNPSLQCEVCSKMFIHKSHLNVHLKKHKNCYSVKCNICNIDFSSQAAYAKHKSIYHFSLVCDICGLKFSSLSALKEHKKIHEINYGHERNHICNVCGKTYIRKRNLKTHITVHMRSKPYVCKICGKSVSSKVILETHIKMHTGVKDFFCNICNKAFASKEYLTIHHRIHDGNKPYECSICQKTFSQKTSLTVHSRFHTGQRPYKCECGRNFATKSHLMKHYKTHELNVDISYPLHTSLQSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -