Opom005046.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxystoma pomonae
Gene Symbol
zfpm1
Assembly
GCA_963921995.1
Location
OY998163.1:139491683-139549753[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0024 0.34 12.7 0.7 1 23 163 185 163 185 0.98
2 17 3e-05 0.0041 18.7 0.7 1 23 557 580 557 580 0.98
3 17 0.0071 1 11.2 6.1 1 23 587 609 587 609 0.98
4 17 5.3e-05 0.0075 17.9 1.4 1 23 615 637 615 637 0.99
5 17 1.5e-05 0.0021 19.6 1.8 1 23 643 665 643 665 0.99
6 17 9.3e-05 0.013 17.2 0.3 1 23 671 694 671 694 0.97
7 17 0.1 14 7.6 0.5 1 21 953 973 953 977 0.91
8 17 0.0015 0.21 13.4 3.3 1 23 982 1004 982 1004 0.98
9 17 1.7e-06 0.00023 22.6 4.1 2 23 1011 1032 1010 1032 0.98
10 17 0.001 0.14 13.9 0.7 2 23 1038 1059 1037 1059 0.96
11 17 0.01 1.4 10.8 0.1 1 23 1077 1099 1077 1099 0.96
12 17 0.00028 0.04 15.6 3.1 1 23 1104 1127 1104 1127 0.95
13 17 1.4e-05 0.002 19.7 1.0 1 23 1132 1155 1132 1155 0.97
14 17 5e-07 7e-05 24.3 1.5 1 23 1162 1184 1162 1184 0.99
15 17 3.5e-05 0.0049 18.5 3.4 1 23 1190 1212 1190 1212 0.99
16 17 0.0006 0.084 14.6 3.8 1 23 1218 1240 1218 1240 0.99
17 17 0.0002 0.028 16.1 2.8 3 23 1248 1268 1246 1268 0.96

Sequence Information

Coding Sequence
ATGCCACAACAGATCTGCAAATCCTGTTTGCTACAGATCATCAACATTCAATACTTTCTAACACAAATGCAGAAATCCCAAGAAACCTTAAAGGATGGTTTGTTCCAAGCGATGCCATCTCAATTTATGAGCCTTCCGGAGCCAATTGACAGGGACGCTGTGGTTCTTATTCCAATTAAAAATGAGataATTGAAGTTAGGATAGAGAAAGATCGAGAAAGTGACAGCTATAGTGTTAACAATGACTCATCCTTTAGTGATAATAATCTAGATAATAATTCATACACTGAATTTACTTCAGAAGACCAGAATATACCTAACAAGTCTAGTAGCATAGTTTTACGctcaaaaaataagttaatcaaagaaattaacaaagaaaaattagAAATTGAAGCCCTTAGAAAGGTTGTTACTGAAAATCATAAGCTGTTTTCCAAGACAGAGAAATTGAAAGAACATGAAGCGACCCACGAACACATAAAGTACGTCTGCAGTTTCTGCGGAAAAGATTTTAAGGTTTACCAATACTGGGCCACCCATGAGAGGAGCCACAGAAAAGATGTGATGAGGAAAAAATACGAGTACAAGGACAGTACAGATTGTATTGAGCAACAATGGCTGACTCTTAAGTTAGGCAAGATTACTTTGGGTCTAGGTATCTTTTATCGCCCGCCGCATTTAAATATCTATTCTGCTCTACGCCAACTTGAAAACTCTATCACCAACGTTGTGACCATGACGGACGAATTCATAATAATGGGCGACGTCAATATAAATCTGCTTAGGCACTCTAATATCACTAATCATTTTGAAAACCTGCTTGATACTTTTAATTTTAGGCAGGTTGTTTTGAACCCTACTCGATACTCTCGTGACAAAGAAAGCCTGATAGATGTTATTATTCTTTCGGATGAACGGTTACTGAAAGGTGGCGTAAAACATCACGACATGCATCACCACTCTGATCATCAGCTTATCTACTGCacgataaatattaaaattagccctgtaaaaccaaagtttatcAAATATCGCAACTTCAGACAGTTTGACATATCTGAATTCAGCCGAGACCTTGTGAATCAGCAATGGTGGCAAGTTCTCAAATGTGATAATGTTAACCTTACAGCTGAACTAATGTCAAagaaaattgtagctttgtttGATGTACACGCACCAATTTGTACCCAAAGAGTTACGAAGCCATCATCGCCGTGGTTTACAGAGGCTCTACGCGCTATGAAAAAGCATCGCAATGACATGTTTTCGAAATATAAACGAACTAAAACCTTACGCGACTGGGAAGCTTACAAAGAAGTTAGAAATCTCTTTACCTCTGCAATACGAGCTGAGAAAAAGGGATTTGTGGAGTTTGTCAGTCGCACTAGAAACCCAAAAAAGCTTTGGAAGTTGCGACTGATTCCGAATACCGTTAAGGCAAGTACCATTTCACATTATCTTAGCTCAAAATGTACTAAATCGGAGTTTGAGTTGGAGCCTGTTGGTGATGATGATGTATCCTGGGCGATCTCACAATTAAAATCAAATGCATCTGATGTCGATGACGTGTCCTTGGAGATGCTCAGAACCGACAAGCTGACCATCGTGCGTCGCTTGAAATGGCCCATTTGTGTTTCTAATAGAGGAACTGTTTTAGATGGCAAGTTTACCTGCGACATATGCGGGCacactgtgaaacaaaaacCCAATTTGGACAATCATATCAAAACGGTTCATAAAGGCGAAAAAACCGCATATAAATGCGAGCACTGCGAAAAGgtattttacaataaaaacagCCACAAATTGCACCTAAGAATCCACACCAACGACACCAAATACCAGTGCCAGATATGCTTGCGGATCTGCACCACCAAGAGAAATCTGGAGGCGCACGTGAGGGTGCACACTGGCGAACGACCGTTTCAGTGCTCGCATTGCAGCAAAAGGTTTGCGGCCAAAGAAAATTTGGGAGTGCATATGAGGTCGCACACTGGTCCGCCAACTTTCCAATGCCTCCTATGCCCGAGGGCCTTCTACACCAACGGCGTTCTTCGCAAACACATCCGAAACGTACACAACAAGGATAAAGATAAAAACACTGTCACCAACTATCCTGATTATATAGTTTGTGATAGTCCTGATAAAGAGAGCCCCCCGTCCAATGTGTCAAAACACATGGCACCGTATGACGATTCAAATGGCACAGACGAGTCGGAAAATGGAAACGCATCGAAGCGAACTGGCGAAGGTGCCAAAAAAGGGGTCAAGTTAAATTGGTTCCACCAGGCTTGCCTGGGAACGGAAAACTTGCTGCCCATAAGAGAGATAAAGTGGGAAAATATCAGCttaaaaaatgtgctaaaaGAGTTCTTGAAGACTGAGGATGAAGTGGAACAAAACATGCCCCATGCAATCTGCAAATCCTGTTCAAAACAATTCTATAACTTCTGGTGTTACTTAACCAAAGTAAAAAGGAACAATTCACTTTTAAAACAGTCCTTAAATAAAATAGTCCAGGATTTGTCAGACTTAAAAACTGAAACATTAACCATTgatgttaaaaataaagtggAAAGTGATTCAGATGAAGTTACGCAAGACACATATAATGACATTGGTAGTGATGTTGACAACAAAAGTGACATTGTTGACATGTTTGTTACCAAAGACACAGTTAAAGATGACAAGGCAAAGGATCTTATAAATGAAATTAAGGCGGTCAGAATTGATATTAAGGAAATTAGGAGACACGCTCGAGTTAAAaagaaaaaaatgtccACAACCACAGAGACCACAGGTTCTAATTCAAACAACAAAAACATTCCCAAAACCGATAGCTCATTAGGCCCCTACACCTGTGTGGCATGTGACACTGGCTTTCCAACGCACCAAGATCTCTTGGCTCACAAAAATGAATCGAAACACAAAGGTTCTGTCTTTATTTGTCCGTACTGTCAGAAAAAAACTACCAATCATCCCAGATTCCAGATACATCTCAGAACTCATACCAAAGAGAGGCCAAATAAGTGTCCACAGTGTGGAAAAGGGTTCAAAAGAAAGCACTACCTAACCGATCACCAAAGGAAGCACACCGATACCAAGTTGGTGTGTCACTTTTGTGGGGAGAGCTTTCAGTCGATCTACGCTTTGTACAGACACGAAAAAGTTCACAAGCAGTATGAGGCCCAAAAGAATGGAACTGAGGCAATTCAAAAAGACAAATTTCGTTGTGAAATATGCGACAAGGTCCTCTACTCGGACATCACTCTCAAAGATCACGTGTTATTGCACGGTCCGAAGAATTTCAACTGCGAAATATGCGGGAAATGTTACACCACCGCCAAACGGTTGAAAACGCATAAATCTGTGTCTCATGAAGagGGCAAATACCCTTGCGAACATTGTGATAAAGTCTACAAGCAAAAGTACGTTTTGGCCCAGCACATGGAAAAAGAACATTTTGGATCCAATCCTACCTACAAGTGTGAATATTGCGATAAGgaCTTTGTGTACAAATCGAGCCTTAGAATGCATCTAAGGATCCACACCGGAAACACCCAGTACCAGTGCAAAGAATGCTTTAAAATTTGCATCAGCCAGCGAAATTTGAACATACACATGAGAAATCATACAGgTGAAAAACCCTATTCTTGCACATACTGCGACCGGAAGTTCGCGTGCCCGTCCAACATGAAAAATCACGTAAAAACTCACACCGGCGAACGCATGCATTTGTGCTCGCTGTGTCCGAAAGGTTTTTACACGTCTAACGCTTTGAAGAAGCACACCAAGACGCACGACAGAGATAAAACCGGCGGCGAGGAGATTACACAAAAAAAACCACAAAGGCCCTGA
Protein Sequence
MPQQICKSCLLQIINIQYFLTQMQKSQETLKDGLFQAMPSQFMSLPEPIDRDAVVLIPIKNEIIEVRIEKDRESDSYSVNNDSSFSDNNLDNNSYTEFTSEDQNIPNKSSSIVLRSKNKLIKEINKEKLEIEALRKVVTENHKLFSKTEKLKEHEATHEHIKYVCSFCGKDFKVYQYWATHERSHRKDVMRKKYEYKDSTDCIEQQWLTLKLGKITLGLGIFYRPPHLNIYSALRQLENSITNVVTMTDEFIIMGDVNINLLRHSNITNHFENLLDTFNFRQVVLNPTRYSRDKESLIDVIILSDERLLKGGVKHHDMHHHSDHQLIYCTINIKISPVKPKFIKYRNFRQFDISEFSRDLVNQQWWQVLKCDNVNLTAELMSKKIVALFDVHAPICTQRVTKPSSPWFTEALRAMKKHRNDMFSKYKRTKTLRDWEAYKEVRNLFTSAIRAEKKGFVEFVSRTRNPKKLWKLRLIPNTVKASTISHYLSSKCTKSEFELEPVGDDDVSWAISQLKSNASDVDDVSLEMLRTDKLTIVRRLKWPICVSNRGTVLDGKFTCDICGHTVKQKPNLDNHIKTVHKGEKTAYKCEHCEKVFYNKNSHKLHLRIHTNDTKYQCQICLRICTTKRNLEAHVRVHTGERPFQCSHCSKRFAAKENLGVHMRSHTGPPTFQCLLCPRAFYTNGVLRKHIRNVHNKDKDKNTVTNYPDYIVCDSPDKESPPSNVSKHMAPYDDSNGTDESENGNASKRTGEGAKKGVKLNWFHQACLGTENLLPIREIKWENISLKNVLKEFLKTEDEVEQNMPHAICKSCSKQFYNFWCYLTKVKRNNSLLKQSLNKIVQDLSDLKTETLTIDVKNKVESDSDEVTQDTYNDIGSDVDNKSDIVDMFVTKDTVKDDKAKDLINEIKAVRIDIKEIRRHARVKKKKMSTTTETTGSNSNNKNIPKTDSSLGPYTCVACDTGFPTHQDLLAHKNESKHKGSVFICPYCQKKTTNHPRFQIHLRTHTKERPNKCPQCGKGFKRKHYLTDHQRKHTDTKLVCHFCGESFQSIYALYRHEKVHKQYEAQKNGTEAIQKDKFRCEICDKVLYSDITLKDHVLLHGPKNFNCEICGKCYTTAKRLKTHKSVSHEEGKYPCEHCDKVYKQKYVLAQHMEKEHFGSNPTYKCEYCDKDFVYKSSLRMHLRIHTGNTQYQCKECFKICISQRNLNIHMRNHTGEKPYSCTYCDRKFACPSNMKNHVKTHTGERMHLCSLCPKGFYTSNALKKHTKTHDRDKTGGEEITQKKPQRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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