Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998166.1:81598594-81673064[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0033 0.47 12.3 1.7 2 23 140 161 139 161 0.96

2 15 0.049 6.9 8.6 2.9 3 23 169 189 168 189 0.97

3 15 0.048 6.7 8.6 0.2 1 23 196 218 196 218 0.98

4 15 0.0012 0.17 13.7 0.3 1 23 326 348 326 348 0.98

5 15 0.00012 0.017 16.8 1.7 2 23 358 380 357 380 0.96

6 15 2.5e-05 0.0035 19.0 0.8 2 23 475 496 474 496 0.96

7 15 0.00093 0.13 14.0 2.5 1 23 502 525 502 525 0.94

8 15 0.00029 0.041 15.6 1.4 1 23 530 552 530 552 0.97

9 15 8.9e-07 0.00013 23.5 2.3 2 23 561 582 560 582 0.98

10 15 6.1e-07 8.6e-05 24.0 1.2 1 23 589 611 589 611 0.97

11 15 2e-06 0.00028 22.4 1.6 3 23 623 643 621 643 0.96

12 15 0.00031 0.044 15.5 4.6 1 23 649 671 649 671 0.99

13 15 3.8e-05 0.0054 18.4 1.7 1 23 677 699 677 699 0.96

14 15 8.4e-08 1.2e-05 26.7 0.4 1 23 705 727 705 727 0.99

15 15 0.0001 0.015 17.0 0.1 1 23 733 757 733 757 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0033	0.47	12.3	1.7	2	23	140	161	139	161	0.96
2	15	0.049	6.9	8.6	2.9	3	23	169	189	168	189	0.97
3	15	0.048	6.7	8.6	0.2	1	23	196	218	196	218	0.98
4	15	0.0012	0.17	13.7	0.3	1	23	326	348	326	348	0.98
5	15	0.00012	0.017	16.8	1.7	2	23	358	380	357	380	0.96
6	15	2.5e-05	0.0035	19.0	0.8	2	23	475	496	474	496	0.96
7	15	0.00093	0.13	14.0	2.5	1	23	502	525	502	525	0.94
8	15	0.00029	0.041	15.6	1.4	1	23	530	552	530	552	0.97
9	15	8.9e-07	0.00013	23.5	2.3	2	23	561	582	560	582	0.98
10	15	6.1e-07	8.6e-05	24.0	1.2	1	23	589	611	589	611	0.97
11	15	2e-06	0.00028	22.4	1.6	3	23	623	643	621	643	0.96
12	15	0.00031	0.044	15.5	4.6	1	23	649	671	649	671	0.99
13	15	3.8e-05	0.0054	18.4	1.7	1	23	677	699	677	699	0.96
14	15	8.4e-08	1.2e-05	26.7	0.4	1	23	705	727	705	727	0.99
15	15	0.0001	0.015	17.0	0.1	1	23	733	757	733	757	0.93

Sequence Information

Coding Sequence: atgatTCCACCGGACGTTCAACTAATGATCGACAAGATATGTCGCTCTTGCATGTGTGAAAGTGCCGATATGACCAATGTCTTCGAAAAGGAACCTGGGGGTGAAGAAGAAAGCGTTTTGTTGTCGGATATGCTAATGGCCTGTGCTCAAATTGAGgtGTCACCTGGTGATGGCCTGCCATACCTCTTGTGCTCAATTTGTGAATCAAAACTCAATACTGCCTTTGAGTTTAAAACACAATGTGAAAAGTCAGATACAGCACTCAGGGAGCTGACCAATATAccaaataaaacacaaaaaaaagaacCGATTGTTGTAAAATCAGATATATCTAGAGttATAAGCGATAGTGAAGATGACAATCTACCACTTATAAATAGAAAGAGGCCGGAAGCGGTGAGGGAAGCCGGTAGTTTGACATGTGAACACTGTCAGAAAACTTTGCCCGGTAAAAAGGCTTTGAAATTACATACTAGACTTCATAACGATGATGGAACCAGGCATTGTCCAGTGTGTTCCTCACAATACTACAGAGTCAATTCTCTTTTTAAACACATGAAAAAGCACAATAAAATCGGGAAAGTATTTACTTGTGTCATTTGTTTAGTTAAATATGATTCTACTGAAGATTTGTATAACCATATAGATACACATAAGGAGGAATTGACTGTAGCCCGGGACGCGGAAAAAGTGAagccaataaaagtaaaaattgaagtGAAAGAAGAGAACGACGACGTGAAATATCATTTAGCAGAATTAGAGGCAGTCAAATCTACCGAAGAAATTAGGATAGAAGTTGAAGCTTGCAAAAAAGTAAGGGACGATGACTTGGATAGTATGGACATTCCTCTTAATCAAATTTCATTTAGTGACAACGATGACACTGTCGGTGCGTTGAGCGAAagcgaaaataatatttttaaaaagagaaaaagagGCCGACCCAGAACTTCAGACGCTTCTAAAAACCACTTCCCTTGTTCTGAATGCGGTAAAGTGTTACGGACCAATTTGGGCCGTAGGATACATTTGAAGACACATGGTATTACTCTCGAACCAAGGgttgtAGAGTGTGAATTCTGtgatagaaagtttaaatataagaaaagtTACTCTCAACACATGCGACTGGAACACGGGATGTCCGATGACGAACAGAGTGACGTGGTGGAAGTTGATAAGCAAGAGGACGGAACCGATCCTAGCACTACCTCAAATAATAATGAAGTTGGTGGAGAAAATGCAGTTTTAAAGCCGGAAAAAGGCGAACTGATAGAAATACCAAACGGAACTGATGAAGAACTTAAAGACCAAAACGCCGCAGCCAAATCGCAACTTGTAGATTGTAATATTAACGGTGAAAATGTTCCGAACGAAAACGTCGAACTGCTGGTTacaaccaaagcgaaaaaaatcCTCAAATGTGAAGTGTGCGGGGCACAGTTTGAGAGGGCCAACCATCTGACCAGGCATATGACTCTGCACCGGGCCCTTTTGACGCATAAATGTGATATGTGCGACCAAGCGTTCCACAACGAACAACTGCTGAAGAAGCACATAGAAGAACAGCACACCAACAAACCATACAACTGTACAATATGTATCAAATCGTTCACTAGAGGGGAGCATCTGATAAGGCATTTGAAAGCACATAAGGCCGACGTGGGGCTAAATGTGAAGTGCTCGATATGTGATCTAACGTTTAGCAGATCGGACCACTTAGCTAGACACACAAAAACTCACCTGATGCTAGACAAACGTCATGTTTGTTTAGAGTGCGGTAAAGCTTTTAACCGGCTGGACAATCTTAAAACTCACCAAAAAGTGCATACAGGACTTAGAGAAAATTCCAAGTTGCATTTGTGTGTCTATTGCGGCAAGGAGTTTAACAATTCCAGTAATATGATAGTTCATATGAGAAGACATACAGGAGAGAGGCCTTATAAATGCAGCGTATGTGACAAAGGATTTCCCAGATCGCATGACCTCAAGTGTCACGAAAGAACGCATTCCGGAGAGAAGCCTTATTTGTGTACACTGTGTGGGAAGTCGTTtaataaaagcaacaaactgTTGCGCCACAGCCGGGTTCACACCGGCGAACGTCCATACGTCTGCAACATATGCGGCCGAGCCTTCACCCAATCAAACGACTTGTCGCTGCACATGCGAAGACACACGGGCGCCCGACCTTACGCCTGCGGCGTTTGCCCCGCCCGTTTCATCCAGTCGGGTCAGCTCAAGAACCATAGAAGGACCACCGGGCACTGGATGGAGACGCAGCCTGATTTGAAAGGAGgACACAGAGTGGAACAGATTCCCGGCCCGGTAGAATCAGTGCCAatcaaatttaagaaatatagtTTCCCCCCAAAAAAAGAAGTGGAAGAAGATATAAGTGACACTGTTCAAATTGTAATAGAGGATCAAgAGCAAGAAAACCATCAAAATGAGCAACAGACAATAGCTAAACCGCCCCACAAGGTACTGATGGGAATTATGGGAAACCTTAAACTATCCGAGAGCGAAATGCAGTCTTTTCTTATCGACAGCAGCAAAATTGTAGAGTTGCAAGGAGGAGGCTATGGCATAATGACCCTTCCATCGACTGTAATCCAAGGCGCCAACGGCGAAGAAATCAAACTGAAAACGGAGCTGAGCACCTTTAACATGGAAAATGTCGAAAACGATATAGACAAAGAGGAAATTGTTACCACCAGCGACACCTATCCGGACAGAAGTACGTCATTTTCCGGAGTGTCCACTTCGACTACCTTTACTGCCGCAGAGGGTTTCGGTTTTCAGACTTTCAATTAG
Protein Sequence: MIPPDVQLMIDKICRSCMCESADMTNVFEKEPGGEEESVLLSDMLMACAQIEVSPGDGLPYLLCSICESKLNTAFEFKTQCEKSDTALRELTNIPNKTQKKEPIVVKSDISRVISDSEDDNLPLINRKRPEAVREAGSLTCEHCQKTLPGKKALKLHTRLHNDDGTRHCPVCSSQYYRVNSLFKHMKKHNKIGKVFTCVICLVKYDSTEDLYNHIDTHKEELTVARDAEKVKPIKVKIEVKEENDDVKYHLAELEAVKSTEEIRIEVEACKKVRDDDLDSMDIPLNQISFSDNDDTVGALSESENNIFKKRKRGRPRTSDASKNHFPCSECGKVLRTNLGRRIHLKTHGITLEPRVVECEFCDRKFKYKKSYSQHMRLEHGMSDDEQSDVVEVDKQEDGTDPSTTSNNNEVGGENAVLKPEKGELIEIPNGTDEELKDQNAAAKSQLVDCNINGENVPNENVELLVTTKAKKILKCEVCGAQFERANHLTRHMTLHRALLTHKCDMCDQAFHNEQLLKKHIEEQHTNKPYNCTICIKSFTRGEHLIRHLKAHKADVGLNVKCSICDLTFSRSDHLARHTKTHLMLDKRHVCLECGKAFNRLDNLKTHQKVHTGLRENSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCSVCDKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLSLHMRRHTGARPYACGVCPARFIQSGQLKNHRRTTGHWMETQPDLKGGHRVEQIPGPVESVPIKFKKYSFPPKKEVEEDISDTVQIVIEDQEQENHQNEQQTIAKPPHKVLMGIMGNLKLSESEMQSFLIDSSKIVELQGGGYGIMTLPSTVIQGANGEEIKLKTELSTFNMENVENDIDKEEIVTTSDTYPDRSTSFSGVSTSTTFTAAEGFGFQTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -