Opom000518.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998163.1:17515231-17527328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 3.6 5e+02 2.7 1.2 2 23 73 94 72 94 0.78 2 28 0.00029 0.04 15.6 3.5 2 23 101 122 101 122 0.97 3 28 0.0048 0.67 11.8 1.0 2 23 130 151 129 151 0.93 4 28 0.0015 0.21 13.4 1.0 1 23 157 179 157 179 0.97 5 28 0.0017 0.24 13.2 1.5 1 23 185 207 185 207 0.98 6 28 0.013 1.8 10.4 0.2 3 23 217 237 216 237 0.96 7 28 4.6e-05 0.0065 18.1 2.3 1 23 243 265 243 265 0.98 8 28 0.0014 0.2 13.4 3.6 1 23 274 297 274 297 0.92 9 28 3.2e-05 0.0045 18.6 2.0 1 23 304 326 304 326 0.96 10 28 3.4e-05 0.0048 18.5 2.2 2 23 333 354 332 354 0.97 11 28 0.0042 0.58 12.0 0.1 1 23 360 382 360 382 0.94 12 28 3.7e-05 0.0051 18.4 1.0 1 22 388 409 388 409 0.95 13 28 0.0061 0.85 11.4 2.9 1 23 493 515 493 515 0.96 14 28 3.4e-05 0.0048 18.5 2.2 2 23 521 542 520 542 0.97 15 28 0.0042 0.58 12.0 0.1 1 23 548 570 548 570 0.94 16 28 3.7e-05 0.0051 18.4 1.0 1 22 576 597 576 597 0.95 17 28 0.0061 0.85 11.4 2.9 1 23 681 703 681 703 0.96 18 28 3.4e-05 0.0048 18.5 2.2 2 23 709 730 708 730 0.97 19 28 0.0042 0.58 12.0 0.1 1 23 736 758 736 758 0.94 20 28 3.7e-05 0.0051 18.4 1.0 1 22 764 785 764 785 0.95 21 28 0.0061 0.85 11.4 2.9 1 23 869 891 869 891 0.96 22 28 3.4e-05 0.0048 18.5 2.2 2 23 897 918 896 918 0.97 23 28 0.0042 0.58 12.0 0.1 1 23 924 946 924 946 0.94 24 28 3.7e-05 0.0051 18.4 1.0 1 22 952 973 952 973 0.95 25 28 0.00039 0.055 15.2 0.4 1 23 1057 1079 1057 1079 0.96 26 28 0.0008 0.11 14.2 1.1 2 21 1085 1104 1084 1106 0.94 27 28 0.0042 0.58 12.0 0.1 1 23 1112 1134 1112 1134 0.94 28 28 3.7e-05 0.0051 18.4 1.0 1 22 1140 1161 1140 1161 0.95
Sequence Information
- Coding Sequence
- ATGCAAAAATACAAGCGAAAAAAAAAGGATAAGTTTGACGCCTGTCAAAATCAGCACCACTGTCAACTAGCGTTCAATCGATACACGGGCATCGACAGAAATGTCGAGTTTATAAATAGAGGgtCCGACGATGAAGACAGTTCTGAGTCTGAAAATGAGAAAAAGGAAAAGAAGAGAAGAAGACAGAGAATCATTCAAAAGGCCTTCAAAAAATCACCCTGCGACATATGCAAAGAAATATTCGCCACCAAGCAAAGAATGCTGTGTCATCGGGTAACCCACTTTGGAGAACAGGCACCGACCTGTTATCATTGCGGTCAGCAATTCCCCCAGAAGACACACCTAATGATTCACCTAAAAATTCACGATAAGAACAGGGTAAGGTCCAGCTGTAAAGTCTGTAACAAGACGTTCGCCAGGGAATACACCAACAAGTTACATACCGAGGCTCACACCGGAAAAGATGAATTCACTTGTAACGAATGCGGGGAGAAGTTTGAAAAATTCGCCAGATTGCGTGTTCATAAACTAAGTCATCTGGGCATAGATCCTTACACGTGCGAGGTTTGTAGTTTGACGTTCGCTCATAGGTCGGTCTTCGAGGTTCACAAGTTGACGCACGTCGCGTATTACGACAAACCGGCCGCTTGCGACGTTTGCGGGGCTAGGTTTACCCAAAAATCGATTATGCTCAGGCATAGAATCATGCACGAGGACAAGAAACCATATTCGTGCGAACTTTGCGGGTTGGGATTCTGTCAAAAATCAAACTACAAAATACACTTGCAACAACACGCCGGTTTCAAGAGAGAGAAGAAGTTTGAATGCGAAGTATGccacaaaaagtttaaaactaaCTATAGCATGAACTATCACAAAAGTGAAGTTCATAGTCCCGAAAATCAACCGTTCTCGTGCTTAGAATGTGGAGAGAGATTTAGGCACAAAGCTAACTTGCAGGTGCACAAATTGTATCATAAGGGGCGCGAGCCTCTACGTTGCGAAACCTGCAATATGCCTTTTGCCAGCAGATACAGTCTTAAGCATCACATAAAAACCCACGCGGATAACAAAATCTTTGAGTGCGACATTTGTAACAAAAAGTTTGTCAGTCCAATTGTTTTGGGCAGTCATAAGATGCTTCACACCGGTGAGAAGCCGTTCAGCTGCCAGGTCTGTGGTAAAAGTTATATAGACAAGTCCAAATTAAATTATCATCAGAAGAAACGGTGTTTCAACCAGAAATATCTGGAGAAAATGGCTAAGAAAGGTATCATTATTAATGTTAAGCTAGAATCAACCAAAGATGATGCCGCGAAACATACTGACAATAGTcatttaataattgtcaaaccGGAATTTGATGTTGATATCGCGctAATATTCGATTCTTTACAAAATgactgcaaaaattttgaaaccaacTACAGCATAAACTATCACAAAAGTGAAGTTCACAGCCCCGAAAACCAGCCGTTCTCGTGCTTAAAATGCGAAGAAAGATTTAGGCACAAAGCCAACGTGCAGGTGCACAAATTGTATCATAAGGGGCGCGAGCTACGCTGCGAAACCTGCAATATGCCTTTTGCCAGCAGATACAGTCTCAAGCATCACATAAAAACCCACGCGGATAACAAAATCTTTGAGTGCGACATTTGTAACAAAAAGTTTGTCAGTCCAATTGTTTTGGGCAGTCATAAGATGCTTCACACCGGTGAGAAGCCGTTCAGCTGCCAGGTCTGTGGTAAAAGTTATATAGACAAGTCCAAATTAAATTATCATCAGAAGAAACGGTGTTTCAACCAGAAATATCTGGAGAAAATGGCTAAGAAAGGTATCATTATTAATGTTAAGCTAGAATCAACCAAAGATGATGCCGCGAAACATACTGACAATAGTcatttaataattgtcaaaccGGAATTTGATGTTGATATCGCGctAATATTCGATTCTTTACAAAATgactgcaaaaattttgaaaccaacTACAGCATAAACTATCACAAAAGTGAAGTTCACAGCCCCGAAAACCAGCCGTTCTCGTGCTTAAAATGCGAAGAAAGATTTAGGCACAAAGCCAACGTGCAGGTGCACAAATTGTATCATAAGGGGCGCGAGCTACGCTGCGAAACCTGCAATATGCCTTTTGCCAGCAGATACAGTCTCAAGCATCACATAAAAACCCACGCGGATAACAAAATCTTTGAGTGCGACATTTGTAACAAAAAGTTTGTCAGTCCAATTGTTTTGGGCAGTCATAAGATGCTTCACACCGGTGAGAAGCCGTTCAGCTGCCAGGTCTGTGGTAAAAGTTATATAGACAAGTCCAAATTAAATTATCATCAGAAGAAACGGTGTTTCAACCAGAAATATCTGGAGAAAATGGCTAAGACAGGTATCATTATTAATGTTAAGCTAGAATCAACCAAAGATGATGCCGCGAAACATACTGACAATAGTcatttaataattgtcaaaccGGAATTTGATGTTGATATCGCGctAATATTCGATTCTTTACAAAATgactgcaaaaattttgaaaccaacTACAGCATAAACTATCACAAAAGTGAAGTTCACAGCCCCGAAAACCAGCCGTTCTCGTGCTTAAAATGCGAAGAAAGATTTAGGCACAAAGCCAACGTGCAGGTGCACAAATTGTATCATAAGGGGCGCGAGCTACGCTGCGAAACCTGCAATATGCCTTTTGCCAGCAGATACAGTCTCAAGCATCACATAAAAACCCACGCGGATAACAAAATCTTTGAGTGCGACATTTGTAACAAAAAGTTTGTCAGCCCAATTGTTTTGGGCAGTCATAAGATGCTTCACACCGGTGAGAAGCCGTTCAGCTGCCAGGTCTGTGGTAAAAGTTATATAGACAAGTCCAAATTAAATTATCATCAGAAGAAACGGTGTTTCAACCAGAAATATCTGGAGAAAATGGCTAAGAAAGGTATCATTATTAATGTTAAGCTAGAATCAACCAAAGATGATGCCGCGAAACATACTGACAATAGTcatttaataattgtcaaaccGGAATTTGATGTTGATATCGCGctAATATTCGATTCTTTACAAAATgactgcaaaaattttgaaaccaacTACAGCATAAACTATCACAAAAGTGAAGTTCACAGCCCCGAAAACCACCCGTTCCCGTGCTTAGAATGCGGAGAAAGATTTAGGTACAAAGCCAACGTGCAGGTGCACAAATTGTATCATAAGGGGCGCGAGCTACGCTGCGAAACCTGCAATATGCCTTTTGCCAGCAGATACAGTCTTAAGCATCACATAAAACCCCACGCGGATAACAAAATCTTTGAGTGCGACATTTGTAACAAAAAGTTTGTCAGCCCAATTGTTTTGGGCAGTCATAAGATGCTTCACACCGGTGAGAAGCCGTTCAGCTGCCAGGTCTGTGGTAAAAGTTATATAGACAAGTCCAAATTAAATTATCATCAGAAGAAACGGTGTTTCAACCAGAAATATCTGGAGAAAATGGCTAAGAAAGGTATCATTATTAATGTTAAGCTAGAATCAACCAAAGATGATGCCGCGAAACATACTGACAATAGTcatttaataattgtcaaaccGGAATTTGATGTTGATATCGCGGTTAAACAAGAGAATCCATCAGAAACCgattctaataaaaatttataccaATTGGACTCCAAAACTGAAATATAG
- Protein Sequence
- MQKYKRKKKDKFDACQNQHHCQLAFNRYTGIDRNVEFINRGSDDEDSSESENEKKEKKRRRQRIIQKAFKKSPCDICKEIFATKQRMLCHRVTHFGEQAPTCYHCGQQFPQKTHLMIHLKIHDKNRVRSSCKVCNKTFAREYTNKLHTEAHTGKDEFTCNECGEKFEKFARLRVHKLSHLGIDPYTCEVCSLTFAHRSVFEVHKLTHVAYYDKPAACDVCGARFTQKSIMLRHRIMHEDKKPYSCELCGLGFCQKSNYKIHLQQHAGFKREKKFECEVCHKKFKTNYSMNYHKSEVHSPENQPFSCLECGERFRHKANLQVHKLYHKGREPLRCETCNMPFASRYSLKHHIKTHADNKIFECDICNKKFVSPIVLGSHKMLHTGEKPFSCQVCGKSYIDKSKLNYHQKKRCFNQKYLEKMAKKGIIINVKLESTKDDAAKHTDNSHLIIVKPEFDVDIALIFDSLQNDCKNFETNYSINYHKSEVHSPENQPFSCLKCEERFRHKANVQVHKLYHKGRELRCETCNMPFASRYSLKHHIKTHADNKIFECDICNKKFVSPIVLGSHKMLHTGEKPFSCQVCGKSYIDKSKLNYHQKKRCFNQKYLEKMAKKGIIINVKLESTKDDAAKHTDNSHLIIVKPEFDVDIALIFDSLQNDCKNFETNYSINYHKSEVHSPENQPFSCLKCEERFRHKANVQVHKLYHKGRELRCETCNMPFASRYSLKHHIKTHADNKIFECDICNKKFVSPIVLGSHKMLHTGEKPFSCQVCGKSYIDKSKLNYHQKKRCFNQKYLEKMAKTGIIINVKLESTKDDAAKHTDNSHLIIVKPEFDVDIALIFDSLQNDCKNFETNYSINYHKSEVHSPENQPFSCLKCEERFRHKANVQVHKLYHKGRELRCETCNMPFASRYSLKHHIKTHADNKIFECDICNKKFVSPIVLGSHKMLHTGEKPFSCQVCGKSYIDKSKLNYHQKKRCFNQKYLEKMAKKGIIINVKLESTKDDAAKHTDNSHLIIVKPEFDVDIALIFDSLQNDCKNFETNYSINYHKSEVHSPENHPFPCLECGERFRYKANVQVHKLYHKGRELRCETCNMPFASRYSLKHHIKPHADNKIFECDICNKKFVSPIVLGSHKMLHTGEKPFSCQVCGKSYIDKSKLNYHQKKRCFNQKYLEKMAKKGIIINVKLESTKDDAAKHTDNSHLIIVKPEFDVDIAVKQENPSETDSNKNLYQLDSKTEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -