Opom006776.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998164.1:44679061-44711010[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.043 6 8.8 1.2 9 23 35 50 34 50 0.92 2 26 0.00055 0.077 14.7 2.5 1 23 59 81 59 81 0.96 3 26 0.04 5.6 8.9 0.2 3 22 88 107 86 110 0.89 4 26 0.0004 0.056 15.2 2.2 1 23 113 135 113 135 0.98 5 26 2.1e-05 0.0029 19.2 0.1 1 23 167 189 167 189 0.96 6 26 3.8e-06 0.00053 21.5 0.9 1 23 195 217 195 217 0.98 7 26 2.3e-05 0.0032 19.1 1.2 1 23 247 270 247 270 0.98 8 26 0.00084 0.12 14.2 0.7 1 23 275 298 275 298 0.94 9 26 0.00034 0.048 15.4 0.1 2 23 310 331 309 331 0.94 10 26 0.0028 0.39 12.5 0.1 3 21 338 356 336 360 0.91 11 26 0.00023 0.032 15.9 2.1 1 23 363 385 363 385 0.98 12 26 5.2e-05 0.0073 17.9 0.4 1 23 420 442 420 442 0.94 13 26 1.7e-05 0.0024 19.4 0.9 1 23 448 470 448 470 0.98 14 26 0.00024 0.034 15.8 0.9 1 18 476 493 476 493 0.94 15 26 0.18 25 6.8 0.5 2 21 516 535 515 536 0.92 16 26 2 2.8e+02 3.5 0.8 1 23 559 582 559 582 0.93 17 26 0.0011 0.16 13.7 0.7 2 23 587 608 586 608 0.96 18 26 0.00017 0.023 16.4 1.4 2 23 639 661 638 661 0.94 19 26 8.6e-06 0.0012 20.4 0.7 1 23 671 694 671 694 0.98 20 26 0.00087 0.12 14.1 0.5 1 19 700 718 700 719 0.94 21 26 0.0022 0.31 12.8 0.6 1 23 734 756 734 756 0.95 22 26 0.0024 0.34 12.7 0.1 3 23 762 784 761 784 0.90 23 26 9.4e-05 0.013 17.1 2.3 1 23 787 809 787 809 0.98 24 26 0.00084 0.12 14.1 1.6 1 23 851 873 851 873 0.97 25 26 3.3e-05 0.0046 18.6 0.8 1 23 878 900 878 900 0.97 26 26 4.6e-06 0.00065 21.3 3.1 1 23 906 928 906 928 0.99
Sequence Information
- Coding Sequence
- atgaaaaaaaccgaGAACCGACCTGAAGAAGCAAACGAAGTTAACAGAAATGAAATTCAAATCGAACGCAGAGATGATGAGAATAATGAAAGCAACATTATGGCCTTCAGTACAAACTCTCACTTGAAGAAGCACATTTCTATAAAGCACAAACAAGAGACTGTGAAAAACTCGTTTCAGTGCGAATTTTGCGGCAAGAAGTTTAACGAAAACGGACATATGAAAATTCACAAAGCCAATCATCTTGGACATTCTGACATTTGCAATTACTGCAAAGACTCCTTCGACAGTCCGGAGAAGTTAAAGGAGCACGTTGAGtctCTGAACCACCATACGTTTCAGTGCAGTAAATGTTCGGCTACTTTTAGAGCCAAGGCGCACTTGTTAAATCATCTGTTAAGACATGATGAAAGCCCGTTGTTTAAGAAAAAAGAGGATCCAGCCTTTCCTAAGAAAAAGAGGGACGGACTTAAGTTGAAGAGATCTGCAAATGGCAAATACGCGTGTACGGTATGCGGCAGAGAATTCGCCTCGGCACCAAATATGAGGCGACATATGGACCTACATTCAGGCGTAAGAAAATACAAATGCGAAAAATGCGGAAAAGATTTTAAGCAATATGCGGGACTTAAAAATCATTTGACAGTTCACAGCGAGGAACGCCCATTTCTTACCAAAGATGCCAAAACCGGTCACAGACGCACGGTACACTTAAGAAAGACTTATAAAGACAAAGACTACAAATGTCCCCACTGCCCTATGGTTTATGGCTATTCTAACAGCCTGTACAGACACATCAAGACTATTCACCAAAAGAGGGTTTTTCTTTGTGAAGACTGTGGCTCGCCTTTCAAAACTCGTTTGGAACTAAGACAGCATCTCtcgaaaaaacacaaaaaaggcAACTGGAAACCAAGCGCCCCATTGCAGTGCGAGTACTGCGGAAAAACGTTTGCAATCAtatcgtatttaaaaatacacaaaGCTGAGCATTTAGGTCACACTGACATTTGTGCGTATTGCAAGGAATCGTTTGAAAGTCCGGAAAAATTGAAGGAACACATTGAGgcTTTAGATCATCATTCGTTTCAGTGCAATAAATGTTCTGCCACGTTTAAGGCGAAAGCTCACTTAATATCTCATTTGCTAAAGCATGAAGATTTGAAAGagagCAAACCCAAACCTAAAGGTAAGCCAAAATATGGAAGAGGCATAAAAGGTGGAGTTCGAAAGCATATTAAATTGGAAAGCGGCAAATTCATGTGCAAAGTATGTTCTAAAGAATTCGCAACGGCTTCTAGCTTGATTAGACATAATTATATTCACACAGGTGAGAAGAACTTCAAATGCGAGCAATGCGACAAATCCTTTTCCCAGCTCCAGGTACTGAAAGCTCACTACTCGGTGCATAGTGATCAACGTCCGCATCAGTGTCCAATTTGTGAGAAATCGTTTAAGGATCCCAGCACTCTATGCAAATGGACAGCAACTGCAGCAAAAGAACTATTTATACATTTAAAATCCGATTCGCACAGGGCTATCATAGAATGTTCCGGATGTCATTCGGAGTTCGACAATTTAAAAGCACTGGCCCACCATAAGTCCACATCTGAATGTGGACAGGGCAAAAAGATCaagaaagaaacaaaaatagaaGAAACCGGAAAAGAAAAATTCGTTTGCAATCAATGTCAGTTCGAAACTATACGgttcaaagaaatatttgatcaTCTTCAACTGAACCACAAAGACAGTCTGAATTGCGTTCTTTGCGatctaaaattcaaaaacaaataccAAGTTTTGGCTCATTTAAAAAGGCACGGCAAAGACAGATACTGTGCCCAACACTTTATCGCTTTCGTTTCTAAAGCGCAATACTTGGCTCATTTTCAAGTTCCCGGACATAATTTGGAATGTGGTATTTGCAACAAAAgGTTTAAGAATAAACACAACGTGGCTTCGCACCGGGCCAAAGTTCATCTGAGGAAATTTCTTAGGGATAAGGAGTATAAATGCCCACATTGTCCCATCGTGTACTCCTACTCGACCACTTTGGGCAGGCATATCAAAACTGCTCACGAAAAGAGTAGAGTCTTTCTTTGCGAGGATTGTGGAAAACCTTATCACACCCCCGAAGAATTAAAGAAACACTCCTGGAAAAAACACAACAAGGGGGATTACAAACCGAAGGGACCTTATCAGTGCGAGTTTTGCGGCAAGAAATTTCCGGTCATAACTTACTATAAAATACACCGGGCCGAACATCTAGGCCACGAACTTTGCTGGTACTGTAAGGAGTCATTCGAGACCCCGGAGAAATTAAAGGAGCACGTCGAGacTTTGGACCACAACTGGTTTCAGTGCGACAAATGTACTTCTAAGTTTAAATCAAAAGCTTACTTGACCGCTCATTTGATGAAGCATGAAGAAGGCTTCAAAAAACCCAGAGATAGAGACGGTAATATTGTGCGTAAAAAACCAAAGGGCTGTCAGGGGGTAAAGGGCGGTATACGTAAACATCAAAAGCTGGAGAACGGAAAATTTAAGTACGCATGTCCGACATGCTCTAGAGAGTTCCAGACAGCTTCAAGCTACTATAGACATCTTCATGTACATCAagaaaagaaaTTCTTTTGCCAAGTGTGCAGCAAATCTTTCTCCCAACTCCAGGGACTAAAAGCGCATCAGTCGGTGCACAGTGACAAACGGCCGTATCGATGTCCCATGTGCGAAAAAACATTCAAGGATTCGAGCACCATGTACAAGCACAAAAGAAGTCATGGCGAAAATTCTAATAGGTTTTCAAAACCGTCTGACGCATTGCCAAAACCCTTTATGAATCCCGACATGTATTTCCACAAGAATTAA
- Protein Sequence
- MKKTENRPEEANEVNRNEIQIERRDDENNESNIMAFSTNSHLKKHISIKHKQETVKNSFQCEFCGKKFNENGHMKIHKANHLGHSDICNYCKDSFDSPEKLKEHVESLNHHTFQCSKCSATFRAKAHLLNHLLRHDESPLFKKKEDPAFPKKKRDGLKLKRSANGKYACTVCGREFASAPNMRRHMDLHSGVRKYKCEKCGKDFKQYAGLKNHLTVHSEERPFLTKDAKTGHRRTVHLRKTYKDKDYKCPHCPMVYGYSNSLYRHIKTIHQKRVFLCEDCGSPFKTRLELRQHLSKKHKKGNWKPSAPLQCEYCGKTFAIISYLKIHKAEHLGHTDICAYCKESFESPEKLKEHIEALDHHSFQCNKCSATFKAKAHLISHLLKHEDLKESKPKPKGKPKYGRGIKGGVRKHIKLESGKFMCKVCSKEFATASSLIRHNYIHTGEKNFKCEQCDKSFSQLQVLKAHYSVHSDQRPHQCPICEKSFKDPSTLCKWTATAAKELFIHLKSDSHRAIIECSGCHSEFDNLKALAHHKSTSECGQGKKIKKETKIEETGKEKFVCNQCQFETIRFKEIFDHLQLNHKDSLNCVLCDLKFKNKYQVLAHLKRHGKDRYCAQHFIAFVSKAQYLAHFQVPGHNLECGICNKRFKNKHNVASHRAKVHLRKFLRDKEYKCPHCPIVYSYSTTLGRHIKTAHEKSRVFLCEDCGKPYHTPEELKKHSWKKHNKGDYKPKGPYQCEFCGKKFPVITYYKIHRAEHLGHELCWYCKESFETPEKLKEHVETLDHNWFQCDKCTSKFKSKAYLTAHLMKHEEGFKKPRDRDGNIVRKKPKGCQGVKGGIRKHQKLENGKFKYACPTCSREFQTASSYYRHLHVHQEKKFFCQVCSKSFSQLQGLKAHQSVHSDKRPYRCPMCEKTFKDSSTMYKHKRSHGENSNRFSKPSDALPKPFMNPDMYFHKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -