Opom014329.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxystoma pomonae
Gene Symbol
LOC113510063
Assembly
GCA_963921995.1
Location
OY998165.1:122568739-122590618[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.9e-10 3e-07 31.3 0.0 3 43 20 60 18 61 0.90

Sequence Information

Coding Sequence
ATGGTCAGAAATTACAAGAGGAAGGTGGGAAAAGCTCCCAACTGCAACTATACGGTAGAAAACTTAGAGCTAGCGAtcagagaagtaaaattacGAAGGATGTCTAGAAGAAAAGCCTGTAAGAAATATGGTATTCCCAGaaccacattaaaaagaaaattagaggGAACTCACACATTAAAATACGGCAGACAACCAGCTTTAAGAGAGAATGAAGAACAGCAAATAGTTCAAGGTCTCATACTTTGTGGAGAATGGGGATTTCCGATGACCAAGTTGGATATCAGGTGTATTATCAAACAGTATCTTGACCGAATTGGTAGGCAGGAATCACGTTTTAAGAATAACATGCCAGGCAGCGAATatattaatctttttttaaaaaggcatcCCGAATTATCGGTccgtttttcagaaaatatcaagCGTTGTAGAGCTGAAGTTGGCGCCGACATTATCAACTCTTATTTTGATCAACTCCAAAATTCTTTAGAGAACGTTTCTCCACAAAGTATACTTAACTATGATGAAACAAATTTTTGCGACGATCCTGGAAAGCAAAGGGTTGTTATAAAAAGGGGATCTAAGCatccaaaaaatgttctagACTCATCAAAGACTAGCGTGTCCATAATGATGTGCGGATCAGCTGCAGGAGTATTGCTACCACCTTATATTGTTTATCGAGCAGAGAATTTATACCCAACTTGGATTGAAGGTGGCCCAGACAACACTCGATACAACAGGTCAAAAAATGGATGGTTTGACGAAAGGACCTTTGaggattggtttttaaaactgGCTCTGCCATACCTTAAAAAGCAACCAGCTCCGCGACTAATGATAGGTGACAACTTATCCAGTCACGTTTCTCAAACAGTCATCGAGAGTTGTAACGAAAATCAAATTAGATTTGTGCTACTGCCGCCAAATTCAACAGGAATTTGTCAACCTCTTGACGTAGCATTTTTTGCTCCCTTAAAACGAAAATGGAGAGCTGTACTTCTAGAGTGGAAACAGAAAAATAGAGGAGTTGTTCCAAAATCTGATTTCCCAAAACTCCTTAAGAAAACCTTAGAAAGTTTAGAGACCGCTTCTGAAAATCTAAAGGCCGGTTTTGCTGCCTGCGGAATCTATCCGTTAAATCGAGAAAGGGTCCTGCAAAAACTGCCAAATGAAACTCATCCGGAACCAGAAAGTTCTGAGGAAATTGAAACATCGTCCGAGTCATCAGACGATGTTGAATATAGTGAACATAACGAGTCATCTGATGTAGATATGTTTCAGGAGAATTCTGATGAAGACATTTTGGAAGCTGAACCGCAACAGGAAACTGTATCGGTGCCGGCGCTTCAACAAAATTTGAGTGATTTGCTAGACAATGAAGGTACTAAATCATCCACTCCCAAAGCTGGAGAGGATATAGATTCACTTATTGGCGAGatatttaATCAAGGTGGGTCCGGCAGCACCACAGCCCCCAATACCCCCAACCTGCAACCCAATAGTGGGGGTACCGGCAATAATGGTCAATCTGGCGGCAGTCAGCAGCAGCAAGTAGGGCCCGATGGGTGCGTTTGCGTGGCTTATTATTTATGCAACAATGGATCCGTCAATACCAATGGGGAGGGGATAATTGacataagAATAAACGACGGACCCTGCGACAGTTATCTGGACGTGTGTTGCGCTCCTAAGGACACCGTCAAAGAACCCATAACTCCCACACCGCCGCCGATCCCCAAACAGTCGGGCTGTGGGTTCAGACGGCCCGAAGGTGTTGGGTTCCGCATCACCGGCGATCAGGATAATGAGGCACAGTTTGGAGAATTTCCATGGATGGTGGCGGTGCTACGAGAACAAAACTTCGAGGGCAGTGCTAGTAAGCTCAATGTTTACCAATGTGGCGGTGCCTTGATCCACCCCCAAATGGTACTGACCGCGGCTCATTGCGTCTCTGACAAAACCAAGAAATACAAGATCAGAGCCGGGGAGTGGGACACTCAACATACCACGGAGATTTATCCCCACCAGGATAGAGAGgTTCAAGCCATTAAAGTCCACCCCCAATACTACGCCGGCGCCCTCTACAATGACGTGGCAGTACTGTATTTAGAAAGGCCAGTAGACAGTGCGGAAAATATCGACGTCATTTGCCTCCCACCCCAAAACACTGTCATCGACACTGCTTCGTGTTACGCCACTGGGTGGGGGAAAGACGAGTTCCACAAAGGAAAATATCAGgtaattctcaaaaaaatcgAACTACCCATCGTGCCGAGAGACACGTGTCAAAACAAACTAAGAACGACAAGATTGGGAAAATTCTTCGAACTTCACGGAAGTTTCATCTGCGCAGGGGGTGTACAGGGAAAGGACACGTGCAAGGGAGATGGCGGATCACCTCTGGTATGCCCCATTCCCAACATGAACGGAAGGTACTATCAGTTGGGAATTGTGGCGTGGGGAATAGGGTGTGGGGATAACAACACCCCAGGTGTTTACGTCAACATAGCGTTGTTTAGGGATTGGATCGATCAACAAATGAAAGAGTATGGGTTGGATGTTTTTTCCTATAGATATTAG
Protein Sequence
MVRNYKRKVGKAPNCNYTVENLELAIREVKLRRMSRRKACKKYGIPRTTLKRKLEGTHTLKYGRQPALRENEEQQIVQGLILCGEWGFPMTKLDIRCIIKQYLDRIGRQESRFKNNMPGSEYINLFLKRHPELSVRFSENIKRCRAEVGADIINSYFDQLQNSLENVSPQSILNYDETNFCDDPGKQRVVIKRGSKHPKNVLDSSKTSVSIMMCGSAAGVLLPPYIVYRAENLYPTWIEGGPDNTRYNRSKNGWFDERTFEDWFLKLALPYLKKQPAPRLMIGDNLSSHVSQTVIESCNENQIRFVLLPPNSTGICQPLDVAFFAPLKRKWRAVLLEWKQKNRGVVPKSDFPKLLKKTLESLETASENLKAGFAACGIYPLNRERVLQKLPNETHPEPESSEEIETSSESSDDVEYSEHNESSDVDMFQENSDEDILEAEPQQETVSVPALQQNLSDLLDNEGTKSSTPKAGEDIDSLIGEIFNQGGSGSTTAPNTPNLQPNSGGTGNNGQSGGSQQQQVGPDGCVCVAYYLCNNGSVNTNGEGIIDIRINDGPCDSYLDVCCAPKDTVKEPITPTPPPIPKQSGCGFRRPEGVGFRITGDQDNEAQFGEFPWMVAVLREQNFEGSASKLNVYQCGGALIHPQMVLTAAHCVSDKTKKYKIRAGEWDTQHTTEIYPHQDREVQAIKVHPQYYAGALYNDVAVLYLERPVDSAENIDVICLPPQNTVIDTASCYATGWGKDEFHKGKYQVILKKIELPIVPRDTCQNKLRTTRLGKFFELHGSFICAGGVQGKDTCKGDGGSPLVCPIPNMNGRYYQLGIVAWGIGCGDNNTPGVYVNIALFRDWIDQQMKEYGLDVFSYRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-