Opom019859.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- bab1
- Assembly
- GCA_963921995.1
- Location
- OY998167.1:37733969-37743926[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-13 3.3e-11 44.0 0.1 4 45 362 403 359 403 0.93
Sequence Information
- Coding Sequence
- ATGACCGGAACCAGCCAGCAGTACTGTCTTCGGTGGAACAACCATAGGAACAATTTATTGGCAGTTTTCGATGAACTTCTACAAAATGAAGCCTTCACGGATTGTACTCTCTTTTGTGACGGAGGTAGTCCCATAAAATGCCACAGGGTGGTTCTCGCGGCGTGCTCGCCCTACTTCCAGAACCTCTTCACAGACCTGCCCTGCAGACACCCCGTGGTGGTGCTCAAGGATGTAAAATATTCCGAAATCAAGGCCATTTTGGAATACATGTACAGAGGAGAGGTCAATGTGGCCCAAGATGAGTTGGCGGCCCTTCTTAAAGTTGCCGAGGCCTTGAAAGTAAAAGGACTCGTTGAAGAAAACAGgtcaTGTCGAAGTCCGCCTCCCTGCGACGAGCCGCCCATGGACAGGTCGCCGTCGATCTCAACGTCAACGGCCACCCCCCAACACCCACCCGTCCATAGCAGTAGCGGCGATATGCACTCTCCGCCTCACAGTTCGAGCAGTTTATACAAAAATCATTACGCCAGCATGTATGACAGAAAAACGCCAGAGCACAATTCAAGAATGATGGGCATGTGGCCCGGACTACCTCTTCCCCCTCATACTGCATCAATACCAAACCAGACGCATTCCCACCCCGCTGTAACTGCCGCAGCAGCCATGCTGAGTAGTGCCTATGATATCaatTCCGACATGTCCCCACTAAAACGCAAAAAACTAAGCAGTTTACTCATGGCAAGGGACACACCGATTTTAAGGACAGTTTTGGGACAAGGGCAACCAGACTCTTCGCAACCTGTCAGTTTAGTGTGCCATCCCGACAGCATGGACCACCTGTCGGGCAGTGAGGACAGAGTTAGTAAGCACATGAAAAATGAACCTTTAGAAGACGCTCAATCGCCGTATACTGACTTCACAGATAGAATGACAGACGAAGAGGAGAAATCAAAGTTGGCCATACCGAGTTCCTCACCTCAGAGCTTTTCACATGACATGAGGACCAACGTCGCCTCCGGAATAGCCAGCTATGTGAACGCGCAAAAACCTGAATggaaaagATACAAGCAATACACAAGACACGACATTTTGTCGGCCATCGACGCAGTACGAAACGGAATGTCCGCACTACAAGCAGCCAGAAAATACGGCGTCCCCTCGAGAACGCTGTACGACAAAGTGAAAAAAATGGGAATAACCACTAGTAGACCGTTCAAAAGAGGCACAAACGGTAGTTCGGCGTGCTTTCCCTATGGCACAGGATCGCCTTATGGCCACCTTTCTGAAAGCGAAGAAAACATTAACAACAACACCGCGTTACTAGAAGCCAGCACGTTCTTACAACACGCTTTGGATTCTGGTGGCGGCGACGGGCGAGAAGCCCTCGCAGCGATGGCAGCCGCCGCGGTTGCGCATTCGGTCGCTTCAGGTCAATCTACAAGTCCAAACAACCACCATCAGGCCAGAAGCCCTAGCCCGAGTCCTACAATGTTAAAATACATGCGTCACAGCTCCCTTACCCCCTCCCCGGCTCCTCACAGCGACCAGACCAATGGGAGTTCGGAAAGGGAAAGGGACGAGGATGAGGTCGAAGACCTCAGCATACACAGGAAGCATGAGCCAATGGAGACTCGAGTTATTATGCCTCCAATAAATcagGTGAGTGCTATGATGAAACAAAAAGAAGAAATGCTGATTAACACCATAAAAGAAGAGGTCAGACAAAGTCAGCTTTTGAAAACAGAAGCTGACTAA
- Protein Sequence
- MTGTSQQYCLRWNNHRNNLLAVFDELLQNEAFTDCTLFCDGGSPIKCHRVVLAACSPYFQNLFTDLPCRHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDELAALLKVAEALKVKGLVEENRSCRSPPPCDEPPMDRSPSISTSTATPQHPPVHSSSGDMHSPPHSSSSLYKNHYASMYDRKTPEHNSRMMGMWPGLPLPPHTASIPNQTHSHPAVTAAAAMLSSAYDINSDMSPLKRKKLSSLLMARDTPILRTVLGQGQPDSSQPVSLVCHPDSMDHLSGSEDRVSKHMKNEPLEDAQSPYTDFTDRMTDEEEKSKLAIPSSSPQSFSHDMRTNVASGIASYVNAQKPEWKRYKQYTRHDILSAIDAVRNGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFKRGTNGSSACFPYGTGSPYGHLSESEENINNNTALLEASTFLQHALDSGGGDGREALAAMAAAAVAHSVASGQSTSPNNHHQARSPSPSPTMLKYMRHSSLTPSPAPHSDQTNGSSERERDEDEVEDLSIHRKHEPMETRVIMPPINQVSAMMKQKEEMLINTIKEEVRQSQLLKTEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01128640;
- 90% Identity
- iTF_01128640;
- 80% Identity
- iTF_01128640;