Opom033092.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998170.1:83773513-83793375[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-10 2.3e-07 31.7 0.0 1 39 209 248 209 252 0.90 2 4 1.5e-12 4.4e-10 40.4 0.1 1 39 263 301 263 305 0.95 3 4 4.6e-18 1.4e-15 58.0 0.0 1 45 318 363 318 363 0.98 4 4 7.3e-16 2.2e-13 50.9 0.0 1 39 370 409 370 413 0.94
Sequence Information
- Coding Sequence
- ATGCCTATTGCTCTGATTAAGTATTTGGAGTACTATCAAGAACCGGAACAACATATACCTATAAATATGACTGGTCATGGAATCATGGCAGGACAGacTCTCTTCTCTCACTTCGACACCGACGACTTTCCACCCGACCCGCCAGCGCCATCTGCCATCCCAGTTGGTCATGTCGATCTGTCAGAGCATTTACCACCTATGCAACCAAACACGCAGATTCACAGGACCGATTTGACAGATATTACTGCCAAGTATGCCATGGAAATCAAGAAAGAGCACGATATTAAATTTGAAACTCTTCGAAACTTTGACCAAGATAGCCTACTAGAAATGGATTCTCACATGAGTGAAGACCATTCGCTAGGCAGTCATGAGGAAGACCTAGCGGACATATCGCAACATTATATGGTTAAACAAGAAATAACAAGTAATTTAGaTATTGGTAGCAGTAATGGTATTGCAGATAGCACTCAACACTCCATGTACATAAAGGAAGAAAACGGGCAAATGATTGACCACTTGGACTCAACAAACGGACACCTGGACGCCGGTCATCTGGACAGCGGTCCAAACACTCCTCGGGGTGCAGGCGGCGGCAGTGGGACTGGGGGACCCAAGACGTGGACGCAGGAGGACATGGATATGGCGTTGGACGCTTTGAAGAATCATAATATGAGTCTTACAAAGGCATCGGCAACTTATGGAATTCCCTCCACAACTTTGTGGCAAAGAGCACATAGGCTAGGCATAGACACTCCAAAGAAAGAAGGACCCACCAAGTCGTGGACAGAAGAAAATCTCAACAACGCATTAGAAGCTTTAAGAACTGGCACTATATCTGCAAATAAAGCGAGTAAAGCATACGGTATACCAAGTAGCACATTATACAAAATAGCAAGAAGAGAAGGAATTAAATTAGCAGCACCGTTTAATGCAGCACCTACAACATGGACACCTGATGATTTAGAAAAAGCATTAGAATCAATCCGAACAGGTCAAACTTCCGTCCAGAAAGCGTCCACAGAGTTTGGCATTCCAACAGGCACTTTATATGGCAGATGTAAACGAGAAGGAATCGAATTGTCGCGATCGAACCCGACTCCTTGGTCCGAGGATGCCATGGGCGAAGCTTTGGAAGCTGTCAGattagGTCACATGTCCATTAACCAAGCCGCCATCCATTACAACCTCCCGTATTCGTCCCTGTATGGCAGATTCAAGCGAGGCATCAAATACGATTCCGACAACATAGAAATATCCCAGGACCCGCTTGCGCAGAACATGGATGTCCAGGCTCAGTTTCAAGGCGTCGAGTTTAGTAACGATCAACAGATTCAGTATCAAAACCATCCGAACAGCTGA
- Protein Sequence
- MPIALIKYLEYYQEPEQHIPINMTGHGIMAGQTLFSHFDTDDFPPDPPAPSAIPVGHVDLSEHLPPMQPNTQIHRTDLTDITAKYAMEIKKEHDIKFETLRNFDQDSLLEMDSHMSEDHSLGSHEEDLADISQHYMVKQEITSNLDIGSSNGIADSTQHSMYIKEENGQMIDHLDSTNGHLDAGHLDSGPNTPRGAGGGSGTGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWTPDDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEISQDPLAQNMDVQAQFQGVEFSNDQQIQYQNHPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -