Onig020913.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- stc
- Assembly
- GCA_963942545.1
- Location
- OZ012661.1:3964472-3967985[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3e-07 0.018 16.6 13.0 1 19 250 268 250 268 0.98 2 10 0.0057 3.2e+02 3.1 15.4 4 18 316 330 309 331 0.88 3 10 0.00066 37 6.1 6.9 1 11 371 381 371 383 0.96 4 10 0.52 2.9e+04 -3.2 0.8 6 18 388 392 385 393 0.56 5 10 1.7e-10 9.2e-06 27.1 15.5 1 18 398 415 398 416 0.97 6 10 0.63 3.5e+04 -3.5 0.8 6 10 445 449 444 450 0.80 7 10 1 5.6e+04 -9.7 13.2 9 18 462 472 452 473 0.65 8 10 5.8e-08 0.0033 19.0 12.2 1 17 509 525 509 535 0.92 9 10 1.8e-07 0.01 17.4 11.9 3 19 542 560 541 560 0.94 10 10 0.34 1.9e+04 -2.6 0.2 8 12 576 580 576 580 0.78
Sequence Information
- Coding Sequence
- ATGTCGAGTTACACGTCTCCATCCAGCCAGGACGATCGCAACCAGAACGGCGGCGGCTACGTGGACTTTAACCAGTTCCTGCGCCAGCACAACTACGTGGACGCGGGCTCATTCGGGCCGCGGATGGACTTGTACGACCAGTTCTACAGCCAGGTGCCTTACTTGCCGAACGGCATCAACCTCTTCCAGCCGCAGCCGACGAGCACGTCCTCGGCGACGATGTACGGCCAACAGCAGCAGCAGGCGCGGATCGAGCTAGCCAGCAACTCCACGCTGGAGCCCACCGCCGCCGAATTCATTCCCCGCTTCAACAGCCTGGCGCTGGGCAAGGCGCAGCCGCAAGTGGACTTTTCGTTCGAGGCGGGCGACAGTGGTGCCGCGTCGTCGTCCGTGGCGGACAACAATCGGAAGCAGCCGCCGGCGAGCTCGGTGCAGAACGACCGGAACTCGCAGAAGAACCGAAACACCGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGCGTGCACGCGCGAATCGAACGAGAAGAAGCAGTTTTCGTGCGGCAAGCCGTGCAACAAGGCGTTGAGCTGTGGCAATCACAAGTGCAAGGACAATTGCCACGCGAGCGAGTGCAAGCCGTGCAAGTTGACGCCGGAGGCGGTGTTGTCGTGCCCGTGCGGCAAAATGGCGATCAAGCTGGACGAGCGGAAGTCGTGCCTGGACCCGATTCCGGTGTGCACCGGCACTTGTGGGAGGACGTTGAAATGCGGCCCGCCGGCAACGCCACATCACTGCACGAGCCAGTGCCACGCCGCGAATTGTCCGCCGTGCAACAAGCAGACGGCGGTGCGGTGCCGATGCGGCAACATGGACCAGATGATCAAGTGCCGGCAGCTGGTGACGCGAGCGGACGACGCCCGTTGCAAGAAGCGCTGCACGAAGAAGCGCAGTTGCGGGAAGCACAAGTGCGCGCAGGAGTGTTGCATCGACATCGACCACATCTGCCCGATGCCGTGCAATCACACGTTGTCGTGCGGGAAGCACAAGTGCGACCAGCCGTGCCACCGCGGCAACTGCCCGCCATGCTATCGCAGCTCCTTCGAAGAGTTGCTCTGTGAGTGTGGCGCGAATGTGATCTATCCACCCGTTCCGTGCGGCACGAAGCGGCCGGCTTGCACGAAACCGTGCACCCGGCAGCACGCGTGCGAGCACCCCGTCCAGCACAATTGCCACTCGAGCGCCACCTGTCCGCCCTGCATTGTCCTGACGACGAAGCACTGCTTCGGCAAGCACGAGCAGCGCAAGACGATCCCGTGCACACAGGCCAGCTTCAGTTGCGGCCTGGCGTGCAACAAGAACTTGCCGTGCGGGCGGCACAAGTGCATCAAGGCCTGCCACGACGGCGCGTGCCAAAGTGCTGGCGAGATCTGCAAGCAAAGCTGCCAGACCACGAGGCTCACGTGCATCCACAAGTGTAACGCCCCCTGCCACGAGGGCGAGTGTCCCGACATGCCTTGCCGCGAAACTGTCGAGGTGACATGCGAGTGTGGAAACCGCAAGCAAGTGCGCACTTGCCACGACTTCTCGCGCGAGTTCCGGCGAATCGCGACCGCACAACTCGCCTCGTCGATGCGCGAGATGCAGAGAGGCAACACGGTGGAGCTGAAGGACATCCTGGGCCCGATCAAGGTGACCAACAACAAAACGCTGGACTGCAACGAAGACTGCAAAATACTCGAGCGCAATCGTCGCCTGGCGATCGGCCTGCAAATTCGCAACCCCGATCTGCAATCGAAGCTGCTGACCCGCTACTCGGACTACATCAAGGGCTGGGCGAAGAAGGACGCGAATCTGGTGCGCACGATCCACGACAAGCTCACGGAGCTGGTGAAGCTGTCGAAGGAGTCGAAGCAGAAGTCGCGGAGCCACTCGTTCCCGACGATGAATCGCGACAAGCGGCAGTTGGTGCACGAGATGTGCGGCATGTTCGGGGTGGACTCGATGGCGTACGACGCCGAGCCGAATCGCAATGTTGTGGCGACTGCGTACAAGGAGAGGTCCTGGCTTCCGGCCATGAGTATTATGGAGGTCATGAAGCGCGAGAGTGGACAACGCCGTGTGCCCGTGCCAAATAATAACGCTTGGGGCGGGAAGAAGTGA
- Protein Sequence
- MSSYTSPSSQDDRNQNGGGYVDFNQFLRQHNYVDAGSFGPRMDLYDQFYSQVPYLPNGINLFQPQPTSTSSATMYGQQQQQARIELASNSTLEPTAAEFIPRFNSLALGKAQPQVDFSFEAGDSGAASSSVADNNRKQPPASSVQNDRNSQKNRNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVACTRESNEKKQFSCGKPCNKALSCGNHKCKDNCHASECKPCKLTPEAVLSCPCGKMAIKLDERKSCLDPIPVCTGTCGRTLKCGPPATPHHCTSQCHAANCPPCNKQTAVRCRCGNMDQMIKCRQLVTRADDARCKKRCTKKRSCGKHKCAQECCIDIDHICPMPCNHTLSCGKHKCDQPCHRGNCPPCYRSSFEELLCECGANVIYPPVPCGTKRPACTKPCTRQHACEHPVQHNCHSSATCPPCIVLTTKHCFGKHEQRKTIPCTQASFSCGLACNKNLPCGRHKCIKACHDGACQSAGEICKQSCQTTRLTCIHKCNAPCHEGECPDMPCRETVEVTCECGNRKQVRTCHDFSREFRRIATAQLASSMREMQRGNTVELKDILGPIKVTNNKTLDCNEDCKILERNRRLAIGLQIRNPDLQSKLLTRYSDYIKGWAKKDANLVRTIHDKLTELVKLSKESKQKSRSHSFPTMNRDKRQLVHEMCGMFGVDSMAYDAEPNRNVVATAYKERSWLPAMSIMEVMKRESGQRRVPVPNNNAWGGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -