Basic Information

Insect: Oxycera nigricornis
Gene Symbol: RREB1
Assembly: GCA_963942545.1
Location: OZ012660.1:57002259-57007700[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0099 1.9 10.6 0.6 1 21 177 197 177 199 0.95

2 15 0.0017 0.33 13.1 0.1 1 23 209 231 209 231 0.98

3 15 2.2e-05 0.0043 19.0 7.5 1 23 237 259 237 259 0.98

4 15 9.2 1.8e+03 1.3 0.1 1 23 373 397 373 397 0.67

5 15 0.38 74 5.7 4.9 2 20 403 421 403 422 0.95

6 15 1.6 3.1e+02 3.7 0.4 1 19 466 484 466 486 0.77

7 15 0.038 7.4 8.8 0.0 1 23 625 647 625 647 0.97

8 15 3e-05 0.0059 18.6 0.9 1 23 656 678 656 678 0.99

9 15 0.00077 0.15 14.1 2.0 1 23 684 707 684 707 0.97

10 15 0.0044 0.87 11.7 2.2 1 23 1017 1040 1017 1040 0.96

11 15 0.00035 0.069 15.2 0.7 2 23 1330 1351 1329 1351 0.97

12 15 0.14 27 7.1 6.3 1 23 1357 1380 1357 1380 0.97

13 15 0.57 1.1e+02 5.1 3.2 1 23 1446 1469 1446 1469 0.95

14 15 0.057 11 8.2 0.9 3 23 1517 1537 1515 1537 0.92

15 15 0.0023 0.45 12.6 4.8 1 23 1543 1565 1543 1565 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0099	1.9	10.6	0.6	1	21	177	197	177	199	0.95
2	15	0.0017	0.33	13.1	0.1	1	23	209	231	209	231	0.98
3	15	2.2e-05	0.0043	19.0	7.5	1	23	237	259	237	259	0.98
4	15	9.2	1.8e+03	1.3	0.1	1	23	373	397	373	397	0.67
5	15	0.38	74	5.7	4.9	2	20	403	421	403	422	0.95
6	15	1.6	3.1e+02	3.7	0.4	1	19	466	484	466	486	0.77
7	15	0.038	7.4	8.8	0.0	1	23	625	647	625	647	0.97
8	15	3e-05	0.0059	18.6	0.9	1	23	656	678	656	678	0.99
9	15	0.00077	0.15	14.1	2.0	1	23	684	707	684	707	0.97
10	15	0.0044	0.87	11.7	2.2	1	23	1017	1040	1017	1040	0.96
11	15	0.00035	0.069	15.2	0.7	2	23	1330	1351	1329	1351	0.97
12	15	0.14	27	7.1	6.3	1	23	1357	1380	1357	1380	0.97
13	15	0.57	1.1e+02	5.1	3.2	1	23	1446	1469	1446	1469	0.95
14	15	0.057	11	8.2	0.9	3	23	1517	1537	1515	1537	0.92
15	15	0.0023	0.45	12.6	4.8	1	23	1543	1565	1543	1565	0.99

Sequence Information

Coding Sequence: ATGAATCAGCAAAAGATGCAATCGACCGAAATGGAGCAGTACCGACGATCTTCAATAACTTCAGAGTCGTCCGTGGAGGCAATGGATCTTGCGCAAACGCCAATCATATTGAAGAGTGAGGCGACCAACAACGAATCCACACCGAGCAATTCGGATAACAATGACTCGGACGTTTGCGAGTCGGAGACGGGGGAGTATCCGTCGAATCGAAGGCCCCATCCTGGCAACTTGCAGTGCAGTCCGCGAAGGGGATTGAGGACGAGCGCCAACTGCGGAAACGTTAGGAAAAAGTTCCGAAGCAGCACGCCGAATCGCGAATGCGACTCGAACAACTACAATAATcttaacaataataacaacagcagcaacaacaactgCTTATCAGCAGCGAACGCGAATAGCGCAATACCACACGCAACGAACCTGCAAACGGAACGCTCGCAGAACGAGTCTGGTTTCGAAGACATGAGCAGCCAACACTTGAATTCTAGTCCAGAGCCGGGAGCCGCCGACCGCGATGACGTTAAATACATTTGCCCCATATGCGAAGTGGTCTCTGCGACTCCACACGAGTTCACCAATCACATTCGATGCCATAATTATTCATCTGGTGATACCGAGAACTTCACGTGCCGCATCTGCTTGAAGGTGCTCTCGTCAGCTTCTTCATTGGACCGTCATGTTCTTGTACATACGGGCGAGCGGCCATTCAATTGCAAGTACTGCCACCTGACGTTCACGACGAACGGCAACATGCACCGCCATATGCGCACGCATAAGCAGCACCTGCAGCAGCGCAGCAAGGTCGTCAGCGGGGGCGGATGTGCCGGTGGGGTCGGCATCCGAGGCAATGCTCCTCCCGGCAGTACGAGCAGTGGAAGTGGCAGTGGAAATGGCGACGGTGAAAGCGACGAAAGCGATGGCTGTTCAACTGATTCCAGCGCAAGCAGCCTGAACAACAATAACCACAGCCACGGCagcaccaacaacaacaacaacaattacAAGCGCAAAAGTACCGACGACGAATCTGCTATTCTCAAAAGGCGAATCAAAACCATCAACAACAACACCATCAACGAAGTGGAGTTCGGCTACAACGGGTGCGTGCAGCGGTACTCGTGTCCTCTGTGCAGCAAGAACGAGTTTGTCGACATTTTCGCGCTGGGGACACACATGGACCGCGAGCACCCGGGCATCCCAGCGAAGTGCCGGCAATGCGAAATGGTCTTCAAAAGCCACAAGTCGTTGAATTCACATCGCTGCCCGCAAAAGACCACTATCACGCATGGGTTCAAGGATCTTACGTTCGTGGACTTCACGAGCGAGAAGTTTCCGCTGATCGCCAAATCATTGTGCGAGCAATCGCTTCGAACGCCGATCACCAGCCAGAAGTTCGAGTGTCCTAAATGCTTTCGCGCCTTTCCTTGCGCCAGCGCCGTCGAGATACACGCCAAGGACTGTGGGGACTCCCCGCACGACTACTCGACTAGAAAACGGGGCTCAAGCGAGAGTTCCGAGGAAGAAACGCGCCGAGATGAGTTTTTCGCTCATTTGGATTTGCGGAACAAGTCTGCCATGAGTTTGGCCAGCACAATGTCGTCTCCGCGAACATCTGAGAAATCAGATACGAACACAAAAGTCGACATCGACAAAACGTCGCAGTCGGAGGGCTACAACTGCAGCGAGTCCAAGGACCTAGCTGATATTCAGTCGATTTTGAATGTGACCTCGTCGTCGAACAGTTTCCTGAGGAATTTCGAGAACGTTGTGAACACACCGCCCAACAGCGATTATATCCTTGgcaaggacgaggaggaggcaCAGGATGCTTTCACGTCAGAGTTCAGGAAAATGAAGTTACGAGGTGAGTTTCCATGCAAACTATGCGCAGCCGTTTTCCCGAACTTGAGGGCTCTGAAAGGACACAATCGCGTGCATCTGAGTGCCGCTGGTGCGGGGCCCTACCGCTGCAATATGTGCCCGTACTCCATTCACGACAAGGCTGCTTTGATCCGCCACATGCGCACTCACAACGGAGATCGTCCCTACGAATGCGCCGTGTGCAATTACGCATTTACCACAAAAGCTAATTGCGAAAGGCATTTGCGAAACCGCCATGCGAAAACCACTCGGGACGAGGTGAAACGTGCCATAATTTACCATCCATCGGAAGACTCCAGCTGCGAAGATCCCATCAAGAAGCTGCAACTGTTCTCCTCACCCGAACTAGATGATGACGAATCGGTGTCCATCCCGAAGGATCGCTCTACACCAGTTTCGCACCTAAAAGAGATGTTGCAAGCCAGTTCTCCCGTCAAAATCCAAGTAAAAAGCTTGGAAAAGCTTATGGACACTTCAACTGCTAGTAGCAAAACTTGTGAAGAAATACCGGAAGATCGGGAAGACGTAACAACTATCTTGGAGTGCACAAAACCTATTGACCTGAGTATGGATGTATTGGATCTGAGTAAAAAAGTCAAGGCAGAGGAGCGTAGGCAGGAGGATAAGCTGGAGTCGAAGCCAATAGACTTctcgatgatggaaaagaatcaTCAACTCCTGCTTGCTCAGCAGCAATTGTTCAAAGATTCCGTGTCGCAAATCGATCCCGCACACTATCTCCAATTGTCGCAACTATATCGCAATTTACTATTTCCTTCAATACCGCCTTTTTTGTTTCCCAACTCATTCCTTCCGAGTAACTTTGCGGATCTAACCAAATTCCCGCCAATGCTTCTGAATCCAATGTTTTCAGCTGCACCTGAAATCTTGAAAGAGCCACCAGGTATGCGCAATTCGACCGATTCCATCCAGCATTCTCCCCTTAAAGCAGTCGACAACTCGATGCAAAATCCGCCAACTCCAATTCAGCTGCTTCCGTCAGTGCCACAGCAGATGAGCATGCCAAGACATTCCTTAGGGAATGCACCATCCACCCCGAGTATGATGCCACAAATCCAGAACACTGGTCCAGTAAAAATGGTCATCAAAAATGGCGTCCTGATGCCGAAGCAAAAGCAACGCCGCTACAGAACCGAACGTCCTTTCACTTGTGAGCATTGTGCTGCTCGTTTCACCCTGCGGTCGAACATGGAGCGTCATGTGAAGCAGCAACATCCCCAGTTTTGGGCGCAGCGACAACGTAGCGGACATCAAATTATGCGCCGCAGCGGCTCTGTAATGTCGCAGATAAGCTCAACTACAGTGTCACCGCAAACTGCTGGCCTGCCTGCCAACCACTTCACAGCAATATCTGACCAAGTGAAATACGCAATTTTAGCGCAACAGTTGAAGGCTCGAAAGGACACGGATATACTGCAGCAAGCGTTGACCCAAAGCAAGAGCGCGGATGCTTGCCATATGAACCTGATACATAGCGCCCATCAGAGCGCAGTCAGCAATGGCCTAGAGGACGATGACCCGAAGCTTGTCATTGATGAGGGTAATGAGGGAAACGATGAAGCcgaagacgaggacgaggacGACGATGAAATGTACGATGAAATTAAGCCtgaagatctttcctcaaacaTGCTTATCGCAACTGCAAAAAATAAAGACATCAATTCTTCTAAGCCGGAAATGCCTCGTTCCCCCGAACCAGCTTCGAATGGCCTCCGTGACAAAGAAGAAGTCATGGACCAAAGCGAAGGATTACACGCTTCGAACCATATGCTCGCCCATGCTGAATCCGTAGGGAAATACTTAAAGCGAGTGGCAAATTCTTCGTTCAAGGACGACTCATCGTCAGACCTGGTTCCCGTCTCAAAGCTTGTTGACAACGCAACCAACTCTTTGTCGTCCTTCAACAACTACTTTCGGCCCACCGACATGGCTAACCAAATGGAACTGAGTGATGAAGAAGGGCTGGTAGCGTCAGGTAGTACATCTGAAAGCAATAACTCGGGTAACGAAGACCCACCGGGAAATACCGGTCGGGAATGCAAGCGAAAGTCAGCCTACAGCCTGGCTCCTAACAGGGTCTCCTGTAACTATTGCCAAAGAACATTCCCATGGACTAGTTCACTTCGGCGTCACATACTTACACATACCGGCCAGAAGCCATTCAAGTGTTCGCATTGCCCTCTCCTGTTTACGACGAAAAGCAACTGTGACCGCCACTTGCTGCGGAAACATGGTAACGTCGAGTCAGCAGTGTCGCTCTACGTTCCCATTGAAGACCTGCCTGATCCCGTGCCGGTGGCAGTGCCGAAGATGGAAGATCACTTGGATGATTCACAGAAACTGCAGCAGTCGTCAGTAAACAACTTGAGCTTAGCCAACTCTAGTGCGAAGCCCATGGAGCCGTTGATATCCTCGTCTGATCTCCCATTCAAATGCCACCTTTGCGATAGTTCCTTCGCAGAGCGCAACCAGTGCCTAGAACATATCAAAGTACTCCACGCGCAGGAGTTTGCGTTGCTTTTGGCGAAAGGCGCGGTGGATGCTGAAGCAGACTACCACCACATTCACTCGACAGAGGACGACGAAAGAATGGGAGAAGGCCGCGGAAAGTACCCCGACTACGCCAACCGTAAGGTGATGTGTGCATTTTGCATGCGCCGGTTCTGGTCGACAGAAGATCTGCGCCGTCACATGCGCACTCACTCTGGAGAGCGTCCTTTCCAATGCGACGTGTGCTTACGTAAGTTCACCTTGAAGCATAGCATGCTACGCCACATGAAGAAACACAGCAATGGGCATAACCACCATCAGTCTAGTTTGCTTAACAGTGGCTCCGACTTGTCTGACGACGAACAGCCCAGCTCGATCCTTCACAAGAATCCCCTGATCCAACAAAAAATACGCGAAGCGTTGAGCCGCGCCGAGGCTTGGCACAACAGCAACACGGGCGGCGAACAAAAGGAAAACATTGCTCAGCGCTCCGTACCTAGGAAACCCGACAAAGACGGCTCAACAACTGCAGGTGCTGGCACAGAAGACAACTCCGACCTAATCAGCGACTTGCTAGGCATCTCGGGGCAAGGAATCCTCAACAAACTCCTGTCGTCTCCCGACGAAGCAGCAAAATTGCTGGGCGTGGAGAAGTAA
Protein Sequence: MNQQKMQSTEMEQYRRSSITSESSVEAMDLAQTPIILKSEATNNESTPSNSDNNDSDVCESETGEYPSNRRPHPGNLQCSPRRGLRTSANCGNVRKKFRSSTPNRECDSNNYNNLNNNNNSSNNNCLSAANANSAIPHATNLQTERSQNESGFEDMSSQHLNSSPEPGAADRDDVKYICPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICLKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHLQQRSKVVSGGGCAGGVGIRGNAPPGSTSSGSGSGNGDGESDESDGCSTDSSASSLNNNNHSHGSTNNNNNNYKRKSTDDESAILKRRIKTINNNTINEVEFGYNGCVQRYSCPLCSKNEFVDIFALGTHMDREHPGIPAKCRQCEMVFKSHKSLNSHRCPQKTTITHGFKDLTFVDFTSEKFPLIAKSLCEQSLRTPITSQKFECPKCFRAFPCASAVEIHAKDCGDSPHDYSTRKRGSSESSEEETRRDEFFAHLDLRNKSAMSLASTMSSPRTSEKSDTNTKVDIDKTSQSEGYNCSESKDLADIQSILNVTSSSNSFLRNFENVVNTPPNSDYILGKDEEEAQDAFTSEFRKMKLRGEFPCKLCAAVFPNLRALKGHNRVHLSAAGAGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCEDPIKKLQLFSSPELDDDESVSIPKDRSTPVSHLKEMLQASSPVKIQVKSLEKLMDTSTASSKTCEEIPEDREDVTTILECTKPIDLSMDVLDLSKKVKAEERRQEDKLESKPIDFSMMEKNHQLLLAQQQLFKDSVSQIDPAHYLQLSQLYRNLLFPSIPPFLFPNSFLPSNFADLTKFPPMLLNPMFSAAPEILKEPPGMRNSTDSIQHSPLKAVDNSMQNPPTPIQLLPSVPQQMSMPRHSLGNAPSTPSMMPQIQNTGPVKMVIKNGVLMPKQKQRRYRTERPFTCEHCAARFTLRSNMERHVKQQHPQFWAQRQRSGHQIMRRSGSVMSQISSTTVSPQTAGLPANHFTAISDQVKYAILAQQLKARKDTDILQQALTQSKSADACHMNLIHSAHQSAVSNGLEDDDPKLVIDEGNEGNDEAEDEDEDDDEMYDEIKPEDLSSNMLIATAKNKDINSSKPEMPRSPEPASNGLRDKEEVMDQSEGLHASNHMLAHAESVGKYLKRVANSSFKDDSSSDLVPVSKLVDNATNSLSSFNNYFRPTDMANQMELSDEEGLVASGSTSESNNSGNEDPPGNTGRECKRKSAYSLAPNRVSCNYCQRTFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDLPDPVPVAVPKMEDHLDDSQKLQQSSVNNLSLANSSAKPMEPLISSSDLPFKCHLCDSSFAERNQCLEHIKVLHAQEFALLLAKGAVDAEADYHHIHSTEDDERMGEGRGKYPDYANRKVMCAFCMRRFWSTEDLRRHMRTHSGERPFQCDVCLRKFTLKHSMLRHMKKHSNGHNHHQSSLLNSGSDLSDDEQPSSILHKNPLIQQKIREALSRAEAWHNSNTGGEQKENIAQRSVPRKPDKDGSTTAGAGTEDNSDLISDLLGISGQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -