Onig019810.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- topi
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:106713962-106716973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6 8.9e+02 2.3 0.5 2 20 187 204 186 206 0.86 2 12 6e-06 0.0012 20.8 1.5 1 23 268 290 268 290 0.97 3 12 5.6 1.1e+03 2.0 0.1 2 10 313 321 312 335 0.86 4 12 0.0017 0.34 13.0 0.2 2 23 396 417 395 417 0.95 5 12 0.18 35 6.7 0.0 1 20 423 442 423 444 0.91 6 12 0.055 11 8.3 2.5 1 21 463 483 463 487 0.90 7 12 6.9 1.4e+03 1.7 1.0 2 23 502 524 501 524 0.82 8 12 8.6e-07 0.00017 23.4 1.9 1 23 539 561 539 561 0.95 9 12 0.00094 0.18 13.9 1.0 1 23 567 592 567 592 0.95 10 12 0.42 83 5.5 1.7 1 23 598 620 598 620 0.88 11 12 5.1e-07 0.0001 24.1 0.3 3 23 628 648 626 648 0.98 12 12 0.0021 0.41 12.8 1.0 3 23 656 677 654 677 0.95
Sequence Information
- Coding Sequence
- ATGAATTTTACCGACGATTATGTCGAATCGGAATCATGGTTAACcgaaaaaatattctcccaatTGAAAGAATATAATCCGCATAAAGAGAATGTGGAAATATCTCAGCGGCCGTCTAATACAGGAGTTTGCAATGAACGTAGTGATACTAATCCGAACATAGTGCACAATTCGTCGATTAATAATGGATTATTTGCGAAAGGTGTAGAGCATTCGATAAGCTATCAGAACAACGATGGAAAAATGACTGATACGCATAGCATCACGTCGGAAGGTAGTACATGCATTGCGCCTATTTCTTCTGATCTAACAAATGAGGAGATCTCGCGGTTGGCATGGGAAGCGCTAAGCAATTTGAGTGATAGCTCAAAAGAGGCTCTTCTCGTGCTTGATTCCGATCATACACAACGCTATTTGGAGCTGATGAAATCGTATGTGGCAGCTCCTCCCCAAGTTCCATATGAGTATTTTCCAGTTTCAGATGATGTGGTGATCGTTAACGAATCCTCCAGCAATGAAACAACACAAACCTCATCAACATCTCTACCATACGCGGTTCAATGCGCGAACTGCGATCAAATCTTCGAAGAATTCGACTTCAATTCGCATATTTGCGACTACGACGAAAACAGAGTCCTGATCGAAGTGGAAGAGGATGTCAAGCTTCCCGTAGCCATTGAAGAAGCTGTCGAGCCGCCATGCATACGACAGCTTCGCGAAAACAATATGCGCATACGAAAATTCCTCAAAGacgaattgaaaattgatttgggTGGACCGACAAAGACACAGGATGGACCTCACGAATGTCCAATGTGCGAGAGGAAATTCGTTCATGCTTCGGGATTAGTCAGACATATGGAGAAACACGCCCTGGATCTCATTCCCGTCACGACAAACAGCAATCCAAATGGAAGTGGTCTCAAAGTTGTTATAAAATGTCGATTATGCGGTCGCATTTTCTTATCGACACAAGAAGGGCTGAAACATTTGATGGACGCccatgaaaaaattaatcaacagGTTGATGATGATACGTCGGACGAAGAGGAAGGTAGCTCAGATTTGCAGCAGGGAGATTTCTGGAATGTTATCAATTACGAAACGATCCTAAAAGAGCTAAATGTGGAAGAAGACTGTCGAATCACAGCATATTTGaaagtggtgattttgaattcaatattgCAATGTGAATTTTGTGATTACTCCTTCTCCGAGGTGTCCGATCTGCTGTTGCATGAATCATCGCACGATCCTTTGCGTGGTTTTGAGTGCTCCACGTGCGGAATCAGTGTGCCAACATCGAAAGAGATTTTCCTTCACTGGCAGGCCGAGTGCCCGTATGCCAAGGATGAGAATCGTAAAAGTGTTAATTTACAAAAGTACTTTGTGTGTAACGTGTGCGAGAATAAATTCAATTCGCATGAACAATTGTATGATCATCGCTACTCCTCGTACCACTTGTTCCCGCGCCTCAGCAAAGCGTTAAACATCATGCAAGTTGTGTGTGAATACTGTGGGATCTTTCATGAAAGCGCCAAATCAATAATGCGGCACCACGAGGAGAAGCACACCAAGAAAGTAAAGAAGGAAACCACGGCTAAATATCGGCAATACCTCTGCGACGTGTGTGGCAAGTCCTACACACAATCCAGTCACCTTTGGCAGCACCTACGGTTTCATAAAGGCGTTAAACCGTTTGCTTGCAAGGAACCCGGATGCAACAGACGATTCACTATTCGGCCAGATCTCAACGATCATATCCGTAAATGCCACACAGGGGAGAGACCATATCACTGCTTGGTGTGTGGGAAGCGCTTCCTAACCGGCTCCGTGTTTTATCAACACCGATTGATTCATCGCGGCGAACGACGCTATGGCTGCGACGAGTGTGGCAAACGGTTCTATCGGGCCGATGCCTTAAAGAACCACCAACGCATTCACACTGGCGAGAAACCATACGGTTGCATGTATTGCAGCAAAAGCTTCCGGCAACGTGGCGATCGCGACAAACACATCCGCGCACGACATGCCAATCTAGATGCAAACGCTCGCCTCGCGAACAACTCCAAGGACGGGATGCCTCCGCCGGGAGGAGTTGTTTATGTAGGCAATGTGGCGTTCCCGACGAGCATGTTCAAGCCGATGATGCGAGACATCGATGAAAGTATTTACTGTGATAAATAA
- Protein Sequence
- MNFTDDYVESESWLTEKIFSQLKEYNPHKENVEISQRPSNTGVCNERSDTNPNIVHNSSINNGLFAKGVEHSISYQNNDGKMTDTHSITSEGSTCIAPISSDLTNEEISRLAWEALSNLSDSSKEALLVLDSDHTQRYLELMKSYVAAPPQVPYEYFPVSDDVVIVNESSSNETTQTSSTSLPYAVQCANCDQIFEEFDFNSHICDYDENRVLIEVEEDVKLPVAIEEAVEPPCIRQLRENNMRIRKFLKDELKIDLGGPTKTQDGPHECPMCERKFVHASGLVRHMEKHALDLIPVTTNSNPNGSGLKVVIKCRLCGRIFLSTQEGLKHLMDAHEKINQQVDDDTSDEEEGSSDLQQGDFWNVINYETILKELNVEEDCRITAYLKVVILNSILQCEFCDYSFSEVSDLLLHESSHDPLRGFECSTCGISVPTSKEIFLHWQAECPYAKDENRKSVNLQKYFVCNVCENKFNSHEQLYDHRYSSYHLFPRLSKALNIMQVVCEYCGIFHESAKSIMRHHEEKHTKKVKKETTAKYRQYLCDVCGKSYTQSSHLWQHLRFHKGVKPFACKEPGCNRRFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYGCDECGKRFYRADALKNHQRIHTGEKPYGCMYCSKSFRQRGDRDKHIRARHANLDANARLANNSKDGMPPPGGVVYVGNVAFPTSMFKPMMRDIDESIYCDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -