Onig019393.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:99929587-99948145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.9 1.2e+03 1.9 0.0 2 23 6 27 5 27 0.92 2 14 0.91 1.8e+02 4.5 0.3 1 23 938 961 938 961 0.91 3 14 2.9 5.6e+02 2.9 1.8 1 23 1076 1098 1076 1098 0.92 4 14 0.00035 0.069 15.2 2.4 2 23 1101 1122 1101 1122 0.97 5 14 5.6e-05 0.011 17.7 0.1 1 23 1128 1150 1128 1150 0.97 6 14 3.3e-05 0.0065 18.4 5.1 2 23 1157 1179 1156 1179 0.96 7 14 2.4 4.7e+02 3.1 0.1 5 23 1192 1210 1190 1210 0.96 8 14 0.0024 0.47 12.6 2.9 2 23 1216 1238 1215 1238 0.96 9 14 0.041 8.1 8.7 0.3 2 23 1249 1269 1248 1269 0.97 10 14 2e-05 0.004 19.1 1.2 1 19 1275 1293 1275 1297 0.95 11 14 0.00022 0.044 15.8 1.8 1 23 1305 1327 1305 1327 0.98 12 14 7.1e-05 0.014 17.4 5.3 1 23 1333 1355 1333 1355 0.98 13 14 0.052 10 8.4 7.1 1 23 1361 1383 1361 1383 0.99 14 14 0.01 2 10.6 5.6 1 23 1389 1411 1389 1412 0.93
Sequence Information
- Coding Sequence
- ATGCACGAGCTAATTACTTGCCCGGTGTGCACGCTGTACCTGCGCCCCGGCATGGCGTTGGAGGACCACCTCGAGACGCACCCGAAGGAGCAGGTGATCCGAGCGCTCGTCTCGCTGGCGATTGGCTCGACCAGAGCCGCCCCGAGCGAGTTCCAGCCCCAGCACATGGGCGCCCACCCGTTCGGGACGTACAGCGATGGCAGCGACGGCGAAGGCTACGGCCATCCGGCCCCCGGCCGAGGGCCCCAATGCGTGTTCGCTCCGCCCCCGCCCCGGCCCAATGTCATGATCCTGAATCGACAGAGTACAATGGTCTACCAGAGTTCCTCGGCCATCGCGGACAGCGAGCAGTCGCCGTCGCAACGGGTTGTCGCCCAGCAGAACTTCATTGCACCCGCCCAGCTACAGATCTTTGCGTTATCACATCCAAACCCCACCACATCCAATCGACTACCACCACCACCAGCCTATGGAACAGCAATCAATCAACTCCGATCTCAGCAGAGCCAAAGCCACAATGGTTTGCACGGTCCAACCCCATCATCTCCATCgccgtcatcatcatcatcatcggcAAGTCGCCACTCACCATCACAGCGATCATCCTTTTCTCAGGCTTCACCGCTACCAACCGGTAACTACTTCGCTGCATCATCGCAACCATCGCCTCGTCCGCCACCATCCCCATCAGTTTTGCGCTATGCCGAGAGTCCGATCTCCGCTCAATATGTGGAACGCGAAAATGGTGATTTTATTGTTCAGGAATCGCCGCGTCACGTGGTGGAATGCGTTGAGACGGAAACGGGCGAGTTTTCAGTTATTGAAAAAGTGATACAATCGCCGCCGAGTGTTGTTCAATTTCATGAATGTGATAGAGGCTACGACGCCGAAAGTAAGGAATATCATGAAAGCGAGGGGCACTGCGAAGAATTCGAGGAGCTACCAACGACCCCATCACCAAAACCGACGGACGGCGACGAGCACGAAAATGTCGACAGTGAAACGGACATTGCATCGACTAAGAGTAGTGGAGTGAACGAAGTAACAGTTTTAAGTAATGTAAAGTTAGATGCTAATGAATCGCTAGAGATAATGGAAAACTTAGAGAATATTAAATCGTCGGCGCAGGGCGAATTGATTTGGTCGGGCCTTGCTGATATTAAGCGGGAAGTTGAAAGTAGAAGAGAGAATACAGGGAAAACTAAGAATGATACGCTGGACGGCTTTGCAGAGCATCCACAGACGCAAGCCTCCACGTCCAGTGCCACAAGTGTAATACGACTGGCGGGCAACAAGCCTGCTGTTGGCCGGAAAAGACACGACGAGGTGGAAGTCAATGTGAAGACTACTAAACAGCATCCAAAAGATATGCGACCGCAATCCTCAAGACGGCACTTTAGGAAGCAACCGAAAAAGATTACAGTGAAGTTTAAAGTAGCGGTTCCGGGGCTGGACACCGATTCGTCTGAACAGAATAATATTCCTGCCGAGATGGAAATACAGAGACGCGAAACAGAAACTCAGGTTCAAATATCCAATCTAGTTGTAGCATTAGAAAGCGATAGCGCAATAAAActgaaacaaaaagaaaacggGCCATTCGAGCTAACGACTGCGAATAGCAATCAAATGACTAGTGTGTCTGATTGTGGGAGAATTTCTCCGTCGGTGCTGGATGCCACTGACAATGCAATAGACATAGAGAACGCCGTAGATACGATTTCGAACGAAGAGACTGATCACAGTGCGACAGAAGCCAATTTAGATGTAGCCCAGCCTATGATTGTTCACGAGCCGTCACAAAGTCACGAGCCACAACTTGAATCCTCGGATGAATGCGAGTGGAGCGACAGCCTAAAAGAACGCTCCAGCATAATGGATATGCCGCGCTTGCAAGAGTCGTCCGCACAATTTTTGCCAACAACAGACGAGTCCGGGGAGGATATTGAACAATTTATGCATGAGGTGTGCAGTCAGGATACCCAAAAAATCggaatttatgaaattaattcgTCCGCAGAAAGCGTTGCTCTAAACAGTTCAGCTGACGTGAGTGATAAATTAATAAGCGACGATTGCAAGGACGATCCAGAAGATTTTACATTTGCCAGCTCGAAGGATATCGAATTAAACAGTATGAACTCGGTATATCCTTCGTCTTCATCGCTATCTACAAAAGCGACAATGAGTACATTCACCTTGCAACAGGAAGAGGCACGACTAGAGGGTGGGTCATTCCATGAAAAAGAGCAACAAGAACAATCGCCTGAATTCAATGCTGACTATCCGTTCGGGTTGTTTTATGGAAGCGCAAACGCCGCTGAAGATCAACCATGGGCTCGATATGTCACGCAACAACAAATGTCCCAATTTCAAGAGTTGGACAATGAACAAGGCAACTATATGGATTTAGATACGTACAAAATAACAAACTGCCAAGTGTCCAGCATACCTAATATTCATGCAGACGAAAAGATGCCGGCTAAAGGTGAAATATCAGAGCAGGAGAGTAACGGTGACGTCGAGAATTCGTGGAGTAATCCGCACTATGCATTGTCGGGCTTTAGAATGACTAACTCGTACGAGCCGTACAAAACCGATTGGACGGAAAATACAGATGGTGTGATTCCATTTTCACAGGATTTCGTTACTGAACTGAAAACTGACGCCGTGCAAGAACAACCCGCGATcccaacaacaacagcaaccaGAAAGAATGAAGTCCCTTCGAATCGGCCTAACTTTACCTCAACCTCAGCGCCAACTATAAAAGTTGAGAAAGTCCTTCCGTACTCGAAACGTATGAAACAATTTCAATGTGCGCATTGCGTAGAACGTTTTCCACTGTTAAAAGAGCGAAACGCCCACTTGATCGCGAACCACGGCTATAAACGTGTTAACCGTCGCCTGATACGGGAAGCTCCTTCCTGTACAATAACCACTGAAAATATGGCTACGCTCGCAGTGTCCAATCAGATATCGACGCAAGTTGAAAGCAACGTAACAATCACGAATAGCGTCTCTGCCGAACCTGTGGAGGACGTGAAGCCCGACATTAAACCGGAAATCACGGTAACAAGCACACCAATCGATGCATCCGTGTTTCCGCGCACAAAATACGATTCGATTCGAGCCGGAGTTTATCGAATGCTGATGCATTTCAACTTGAATGTGCTCAAGTCACGTGATGTGGTCATCGATGAAACGTACTTCGAATCCAAGTCGTTCTGCTGCTTGACTTGTAAGCGAAACTTTATTAGTGTTAAGCTGTACGACGAACACTTGGCGGAACATCCTGCGGAATGTTTCACATGCGGGCGAAAGTTTACGCGCTGGACGTACTTTTCGCTGCATTTGAAACGCCATGTCGGATGGAAGGATTTCGCATGCTCAGTGTGCGAGAAGAAATTCGTGATCCGAAGTGCGCTTGTCGAACATATGCGAATGCACACGGGCATAGCGCCACTAAAATGCAACCTGTGCGACAGGACATTCAAGCGTTACTCAAACCTGACGCAGCACAAAAAGATTTGCCACAGCAGCCGCGCGACCAAAAAGAAGGACTATGTCTGCTACTGTGGCGAAGTGCTCCCATCGAAAGCGCGTTTCATGTGGCACAAAGAAACGCACGACACTAAGCCAAAAGTCTGTCCGTATTGTCGTGATCGTTTCATCCACCGGCGAAGCCTGAAACGCCACATACGCCTCACGCATTCGGACAAATTCGATTACATTCAACCGGTGAAATGTCAAGAATGCAAGCAAGTGTACGCGAAGGCTAGCATGAAGGCGCACATGCTTACGCATTCGATCGATACCCAACACGAATGTTCAATCTGCAATAAATCGTTCACGACAAAGTGGAACTTGAAGATCCACAGTTGGGTGCACGCCAACCGCACAGCCAAGCCCTTCAAATGTGAGCACTGTGTGAAGGCGTTCGTACGCGAAATCGACTATAAGAACCATTTGAACTCGCACAAGAACATCAAACCCTTCACGTGCGAGTACTGCGGCTGTAAATTCATAAGGAAATACAATTATATACGACACAGAAAGGAGCACACCGCCCAAAAACGCTTCAAATGCGACCTGTGCTGCAAAATGTTCCATCGCAACTACTATTTGATTGAACATCGTCGCATGCACACTGGCGAACGGCCATTTCTCTGCACAATTTGCGGGAAAAGCTCGACGACAAAAACCAATCATaacaaacatttgaaaattcatcattCGCGTGATCCGTTCACGGCGGAGGCGTAG
- Protein Sequence
- MHELITCPVCTLYLRPGMALEDHLETHPKEQVIRALVSLAIGSTRAAPSEFQPQHMGAHPFGTYSDGSDGEGYGHPAPGRGPQCVFAPPPPRPNVMILNRQSTMVYQSSSAIADSEQSPSQRVVAQQNFIAPAQLQIFALSHPNPTTSNRLPPPPAYGTAINQLRSQQSQSHNGLHGPTPSSPSPSSSSSSASRHSPSQRSSFSQASPLPTGNYFAASSQPSPRPPPSPSVLRYAESPISAQYVERENGDFIVQESPRHVVECVETETGEFSVIEKVIQSPPSVVQFHECDRGYDAESKEYHESEGHCEEFEELPTTPSPKPTDGDEHENVDSETDIASTKSSGVNEVTVLSNVKLDANESLEIMENLENIKSSAQGELIWSGLADIKREVESRRENTGKTKNDTLDGFAEHPQTQASTSSATSVIRLAGNKPAVGRKRHDEVEVNVKTTKQHPKDMRPQSSRRHFRKQPKKITVKFKVAVPGLDTDSSEQNNIPAEMEIQRRETETQVQISNLVVALESDSAIKLKQKENGPFELTTANSNQMTSVSDCGRISPSVLDATDNAIDIENAVDTISNEETDHSATEANLDVAQPMIVHEPSQSHEPQLESSDECEWSDSLKERSSIMDMPRLQESSAQFLPTTDESGEDIEQFMHEVCSQDTQKIGIYEINSSAESVALNSSADVSDKLISDDCKDDPEDFTFASSKDIELNSMNSVYPSSSSLSTKATMSTFTLQQEEARLEGGSFHEKEQQEQSPEFNADYPFGLFYGSANAAEDQPWARYVTQQQMSQFQELDNEQGNYMDLDTYKITNCQVSSIPNIHADEKMPAKGEISEQESNGDVENSWSNPHYALSGFRMTNSYEPYKTDWTENTDGVIPFSQDFVTELKTDAVQEQPAIPTTTATRKNEVPSNRPNFTSTSAPTIKVEKVLPYSKRMKQFQCAHCVERFPLLKERNAHLIANHGYKRVNRRLIREAPSCTITTENMATLAVSNQISTQVESNVTITNSVSAEPVEDVKPDIKPEITVTSTPIDASVFPRTKYDSIRAGVYRMLMHFNLNVLKSRDVVIDETYFESKSFCCLTCKRNFISVKLYDEHLAEHPAECFTCGRKFTRWTYFSLHLKRHVGWKDFACSVCEKKFVIRSALVEHMRMHTGIAPLKCNLCDRTFKRYSNLTQHKKICHSSRATKKKDYVCYCGEVLPSKARFMWHKETHDTKPKVCPYCRDRFIHRRSLKRHIRLTHSDKFDYIQPVKCQECKQVYAKASMKAHMLTHSIDTQHECSICNKSFTTKWNLKIHSWVHANRTAKPFKCEHCVKAFVREIDYKNHLNSHKNIKPFTCEYCGCKFIRKYNYIRHRKEHTAQKRFKCDLCCKMFHRNYYLIEHRRMHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -