Onig043526.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012663.1:41674182-41684492[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0096 1.9 10.7 5.2 1 23 430 452 430 452 0.98 2 13 0.00013 0.025 16.6 0.7 2 23 459 480 458 480 0.96 3 13 7e-07 0.00014 23.7 3.2 1 23 486 508 486 508 0.97 4 13 0.00025 0.049 15.7 0.5 2 23 515 536 514 536 0.94 5 13 1.3e-05 0.0025 19.7 4.1 1 23 542 564 542 564 0.98 6 13 0.1 20 7.5 2.8 2 16 571 585 570 594 0.83 7 13 0.00018 0.036 16.1 1.4 2 23 601 622 600 622 0.95 8 13 0.0047 0.92 11.7 6.1 1 23 628 650 628 650 0.98 9 13 0.75 1.5e+02 4.7 5.0 1 23 656 678 656 678 0.94 10 13 1.1e-05 0.0021 19.9 2.2 1 23 684 706 684 706 0.98 11 13 0.0041 0.8 11.8 2.8 1 23 712 734 712 734 0.96 12 13 2.3e-06 0.00045 22.1 5.6 1 23 740 762 740 762 0.99 13 13 0.35 69 5.8 0.5 1 10 768 777 768 780 0.94
Sequence Information
- Coding Sequence
- ATGGACGGGGGCGCCGTTTGTCGTGTATGCTTGTCGAAGAACGATGTGACCTCAATTTTCGCAAAGAACAACGAGGACTTGTTGACGAAGCTGCGACTGGTCGGGGGAGTTCCAATCGTGGAAGATGACCGTCTACCGCAGTGCATCTGCCAAGCGTGCTCTCGCGAGTTGCAGTTTGCGTACTATCTTATATCACAGTACGAGGCCACCTTTAATAAACTCAGAATCGTATCCTTGtaccataaaaatgttaaagaaAAGCCATCACCAGGTAGTTTTCGTGAAAACAAGAAGAAAGCGATTGCGAACGAGATTCAAGGGGAGGTGCAAGCAGCGACCGCAGACAATACTCTTGTTGCCGAGATAGTTGTTAAGGAAGAAATGCTTCTGGACGACCCAGAAGAGAGTGAGTGCTTTGTAAGCAAAGGCGTGCCTGGCTGTAGCAAAGTTATTGATAAATATAAGATCGAAGTAGTGGATGAAAGCATCGAAAAAAGTGGAGAAAAAATGTCTGGACTTCGTTTAGATGACACAGTTTTCGATAGACATTGTTCAAAACAATTAATCGAGCAAAAAACTGAAGACCAAGGTGACTATGAACAAGGTTCGAATGAATTTTTAGATGCTGAGTTGTTAATGGAAAGCGAGATCACAAATATTGTCGTTAAAGAAGAAACCAAATTGGGGGGTGAGGTCATCAACAACGACAGAGTAGAAGGTTCTGACCAGAATAAGAGGTCTCACACGGTAAAATCAGAATTTAGAAGGGATACTTACGAGACAGCTACATTGGACGATACCAAACGAGATGGCCAgagaaatgaaatgaatgaatgcGGCATTAGTAACAAAAGGTTTCATGATGATTTTCAAGCACAAACTATGATATTGTGTGACCACAGAAAAGGATCCTTAACTGCAGAATGCTCGAAATGTAAAACACACATTAAACCATCCAAACACGAAGCTGCAACGAAAGAGCATCAAACAAAAACAGCAATTCTCAATAGAACGAAGCTCAAGGAATGTCCAAATTCGTTTGTACGTTTGGAAAGGCTAAAGATAAACATTACGCGTCAAAATGTTGTTCCGGCGAATGCTTTCGATCCAGATAAAAACGCCGTTCTTCTTGAGTGTGGGAAACTCAATGAAAAGCTCGCAGATCAATATCTCTTGAAGCAACAGGATGCTTTGCATTCCAATACAGAGTTGCAAATATTCGACGAAGCGGGTGAGTCGCTTGCAAAAGATCGACTGCTGGAAGTGCATACGAGATCTGACGACACTTTTACGTGCGAATCATGTGACAAAAGGTTTTCATGTAGGAAAGATTTCAGACAACACCTAATCACACATTCCAACTCTGGGTTGCTTACATGTGAAGAATGTGGAAAAAGGTTTCCATATATGTATAGGCTGAGAGAGCACCAAAAgttgcatttgaatcctgacgcgttTAAGTGCCAACAATGTGGCAAAAGATTTTCGACCAAGGACAGCTTACGTAGGCATTCAATCAAACATGCAAACCCTGCGTTGCTTCCATGTGAAAAATGTGGGAAAACATTTGCAACTGGGCATAACATGAATGAGCATCAAGtgttgcatttgaatcctgacgcatttaagtgcgagCACTGTGGCAAAAGATTTTTGTACAAGGATTCTTTAAAAAGACATCAAATGATACATGCGCAGCCTGACAGTTTGAAGTGCAAACAATGTGACAAAATGTTATCGACCAAAGACAACTTACCATTGATTCGCcataaaatcacacattcgaatcgggagttgcttacatgtgaacaatgtggaaaatcattttcatcTGAGTGTTCCATGAATGAGCACCAGGagtggcatttgaatcctgacgcgttCAAATGCGAGCATTGTGACATACGATTTTTAAACAAGCATTACTTACAAAGTCATCAAACGATGCATGCGAATGGTGATAGTTTTAAGTGCGGGCAATGTGACAAAATGTTTTTGTGTAAGGCCAGCTTACGAAGTCACCATAtgttgcatttgaatcctgacgccTTCAAGTGTGAACAATGTGGCAAATTGTTTTCTTCGAAGCAAATGTTACGTCGGCATAAAATCTCACATTCGAATCCGGAGTTGTTTACATGTGACAAGTGTGAGAAAACATTTGCAACTGAGTGTTTCATGAAAGAACACCAGGagtggcatttgaatcctgacgcgttCAAGTGCGAGCATTGTGGCAAAAGATTTGAATACAAGTATTACCTACAAAGTCATCAAAAGATGCATGCGACGTCTGACAGTTTTGAGTGCCAGCAATGTGGCAAAATGTTTTTGTCTAAGCGAATATTTTCCCTTTGCTTATGTTGCCGCCATAGTGGCGGCATTCCAATATCGTCCTAG
- Protein Sequence
- MDGGAVCRVCLSKNDVTSIFAKNNEDLLTKLRLVGGVPIVEDDRLPQCICQACSRELQFAYYLISQYEATFNKLRIVSLYHKNVKEKPSPGSFRENKKKAIANEIQGEVQAATADNTLVAEIVVKEEMLLDDPEESECFVSKGVPGCSKVIDKYKIEVVDESIEKSGEKMSGLRLDDTVFDRHCSKQLIEQKTEDQGDYEQGSNEFLDAELLMESEITNIVVKEETKLGGEVINNDRVEGSDQNKRSHTVKSEFRRDTYETATLDDTKRDGQRNEMNECGISNKRFHDDFQAQTMILCDHRKGSLTAECSKCKTHIKPSKHEAATKEHQTKTAILNRTKLKECPNSFVRLERLKINITRQNVVPANAFDPDKNAVLLECGKLNEKLADQYLLKQQDALHSNTELQIFDEAGESLAKDRLLEVHTRSDDTFTCESCDKRFSCRKDFRQHLITHSNSGLLTCEECGKRFPYMYRLREHQKLHLNPDAFKCQQCGKRFSTKDSLRRHSIKHANPALLPCEKCGKTFATGHNMNEHQVLHLNPDAFKCEHCGKRFLYKDSLKRHQMIHAQPDSLKCKQCDKMLSTKDNLPLIRHKITHSNRELLTCEQCGKSFSSECSMNEHQEWHLNPDAFKCEHCDIRFLNKHYLQSHQTMHANGDSFKCGQCDKMFLCKASLRSHHMLHLNPDAFKCEQCGKLFSSKQMLRRHKISHSNPELFTCDKCEKTFATECFMKEHQEWHLNPDAFKCEHCGKRFEYKYYLQSHQKMHATSDSFECQQCGKMFLSKRIFSLCLCCRHSGGIPISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -