Basic Information

Insect: Oxycera nigricornis
Gene Symbol: -
Assembly: GCA_963942545.1
Location: OZ012662.1:105780287-105782146[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.14 28 7.0 0.2 1 23 70 93 70 93 0.92

2 11 0.45 89 5.4 3.5 6 23 307 324 303 324 0.94

3 11 0.0089 1.7 10.8 1.8 1 23 360 382 360 382 0.91

4 11 0.26 50 6.2 1.8 2 23 397 418 396 418 0.95

5 11 7.1e-06 0.0014 20.5 2.0 1 23 424 446 424 446 0.99

6 11 6.8e-06 0.0013 20.6 2.6 1 23 452 474 452 474 0.98

7 11 3.2e-07 6.2e-05 24.8 0.6 3 23 482 502 480 502 0.98

8 11 0.00021 0.041 15.9 0.0 1 23 508 530 508 530 0.98

9 11 0.00025 0.048 15.7 0.2 2 23 537 558 536 558 0.93

10 11 7.7e-07 0.00015 23.6 0.8 1 23 564 586 564 586 0.98

11 11 9e-06 0.0018 20.2 0.1 1 23 592 614 592 614 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.14	28	7.0	0.2	1	23	70	93	70	93	0.92
2	11	0.45	89	5.4	3.5	6	23	307	324	303	324	0.94
3	11	0.0089	1.7	10.8	1.8	1	23	360	382	360	382	0.91
4	11	0.26	50	6.2	1.8	2	23	397	418	396	418	0.95
5	11	7.1e-06	0.0014	20.5	2.0	1	23	424	446	424	446	0.99
6	11	6.8e-06	0.0013	20.6	2.6	1	23	452	474	452	474	0.98
7	11	3.2e-07	6.2e-05	24.8	0.6	3	23	482	502	480	502	0.98
8	11	0.00021	0.041	15.9	0.0	1	23	508	530	508	530	0.98
9	11	0.00025	0.048	15.7	0.2	2	23	537	558	536	558	0.93
10	11	7.7e-07	0.00015	23.6	0.8	1	23	564	586	564	586	0.98
11	11	9e-06	0.0018	20.2	0.1	1	23	592	614	592	614	0.99

Sequence Information

Coding Sequence: ATGTCAGAGTCGAACTCGTCTCCCGCAAGTAGTTTTCCTCCAAAACAGGATGTCCTGCCTCATATGGAAATAGAGTTGCCTTCGATTAAACTCACTGGCaaaacagaaattaagaaagaaGGGCCGGTCGATATATACCAAGAACTGGAACTCGACGCAAGGATCAAGTGTGGGGAAGTTTTCGCGTCCTGCCATGGACACTATGTATTTATTTGTGCCTTTTGCAAACGTCCGTTTAGTGATATGCAGCCGTTTGGGGAGCATATCCGTGACCAGCACGAGTGCCAACTATTATCCGGGAAGAGCTGCGAAGCTGAAGTCGAATTGCTGCAAACCGATTCATCTTTGACAAAAGCGGAACCAATCGATGGTTCAGAGAATGTCGAAAGCGAAGAAGTGGATGCTTTGGGAAGAGCGAGTTCAAATTCAACGAGTGAATTGAAAGGAACAGGCGAATTGTCTAGCTGCGATCTTCCTTTTCAAGAGTACAAAACCAAAAGATGCCTCAAGAGACAGAAAACTACAACCAAATGTGAGGTTCCCCCGAACAGAAAGAAAGCTCGACAGGAGCCAAATTTGTGCAAGCAGTCTATTGAGGAAATAAAACACGAAGCTTCCAGTCTTGAGGGTCCTGATAAACATGAAAGTCAAGCAAAAGATTCCGAAGACAGCTCGCGGCTGAGCTTTGAGTTGTGCAACATGGGAAAATATCTTCACCAGACCGAGAAGGACAGTGACGGGATACACGAAGATGAGGATGAGAATGATGATGAAAGCTTTAAACTTTCCGAATCGGATGCTGATGAAAATAACTCCTGTGATAACAGTGACCCTACTTATGAAAACCAAGCGGTTCGGCGCAAAAGCAAATCACAGACCATCTCGCAGCCGCTTTCGAAAGAGCTGTTTTGTGTACCTTGCAATAAACAGCTCAGGAGCAAACGAACGTTCAGCAGGCACAAAAGGAGACATAAGCTCGATGCCGATCGGGACCCTGCGATGGGTAGGAAGCAACGCGTTTTTAAATCAAAGATGGAACGGAAGGAACAATGCAAGGACACCGCAAAGGTTTCATGTTTTCACTGCAATATATGCGACAGCTATTTCAAGTCGAAGTTCGGCCTGCAAGCCCATTCCGACGCTCATGACATCATACCAGCCGCGTTGCAAGGGAATTTGGAGTTTCTCAAGTGCAAGTTCTGCAGTCAACAGTTTAACAAGTACGCAGAACGAAAGGATCACGAACGCGCGCATACAGGAGCTCGACCCTACGAGTGTTCTTACTGCAAAAAAGGTTTTACATCGAACTACGATCGAAAAATACACATTCGCTCACACACGGGCGAGGATCGCTACGAATGTCCGCACTGCCCCAAAGTTTGCACGAATAAAACGGACATCAAACGACACATTGCGCGACACCTGAATATCCGCAACTACGGTTGCGAGATGTGCGACAAACGATTCTATCGTCCGTTCGAGCTGGCTCGTCATATGCGCACCCACACAAAAGAGAGACCGTACGTTTGCGAAGATTGTGGCGCTACATATCCTGTAATGGCACAGCTGAAAGATCACCAGTTGCGGCATACGGGCGTGAAGAATATCAAATGCGAAATCTGCGGTAGACTATTCTATTCGAAAAGCGTTTTGAAGGTGCACATGCCAACGCATTTCGACGACAAGCCATTCGAATGTGAAATATGTGGGCGGAAGTTTTCACGAGCGAAAGCAATGCAGAAGCATCAGAAACTGCATTCCGGcgaaaagaaatatgtatgtaatatttGCGGCAAAGCATACGCACAAGATTCGGGATTATATGCTCACAAAAAAACGCACGGAGCAAATGTGGTGTAG
Protein Sequence: MSESNSSPASSFPPKQDVLPHMEIELPSIKLTGKTEIKKEGPVDIYQELELDARIKCGEVFASCHGHYVFICAFCKRPFSDMQPFGEHIRDQHECQLLSGKSCEAEVELLQTDSSLTKAEPIDGSENVESEEVDALGRASSNSTSELKGTGELSSCDLPFQEYKTKRCLKRQKTTTKCEVPPNRKKARQEPNLCKQSIEEIKHEASSLEGPDKHESQAKDSEDSSRLSFELCNMGKYLHQTEKDSDGIHEDEDENDDESFKLSESDADENNSCDNSDPTYENQAVRRKSKSQTISQPLSKELFCVPCNKQLRSKRTFSRHKRRHKLDADRDPAMGRKQRVFKSKMERKEQCKDTAKVSCFHCNICDSYFKSKFGLQAHSDAHDIIPAALQGNLEFLKCKFCSQQFNKYAERKDHERAHTGARPYECSYCKKGFTSNYDRKIHIRSHTGEDRYECPHCPKVCTNKTDIKRHIARHLNIRNYGCEMCDKRFYRPFELARHMRTHTKERPYVCEDCGATYPVMAQLKDHQLRHTGVKNIKCEICGRLFYSKSVLKVHMPTHFDDKPFECEICGRKFSRAKAMQKHQKLHSGEKKYVCNICGKAYAQDSGLYAHKKTHGANVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01127760;
90% Identity: iTF_01127760;
80% Identity: iTF_01127760;