Basic Information

Insect: Oxycera nigricornis
Gene Symbol: -
Assembly: GCA_963942545.1
Location: OZ012662.1:105771343-105773037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.9e-05 0.013 17.4 2.5 1 21 148 168 148 169 0.95

2 10 0.0048 0.94 11.6 2.5 1 23 291 314 291 314 0.94

3 10 0.05 9.8 8.4 2.2 2 23 331 352 330 352 0.93

4 10 2.6e-05 0.0051 18.7 3.1 1 23 358 380 358 380 0.98

5 10 2e-05 0.004 19.1 1.2 1 23 386 408 386 408 0.99

6 10 0.00028 0.055 15.5 0.8 1 23 414 436 414 436 0.97

7 10 4e-06 0.00079 21.3 0.3 2 23 443 464 442 464 0.97

8 10 5.9e-06 0.0011 20.8 1.6 2 23 471 492 470 492 0.95

9 10 8.2e-07 0.00016 23.5 1.2 1 23 498 520 498 520 0.97

10 10 4.2e-06 0.00082 21.2 0.1 1 23 526 548 526 548 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.9e-05	0.013	17.4	2.5	1	21	148	168	148	169	0.95
2	10	0.0048	0.94	11.6	2.5	1	23	291	314	291	314	0.94
3	10	0.05	9.8	8.4	2.2	2	23	331	352	330	352	0.93
4	10	2.6e-05	0.0051	18.7	3.1	1	23	358	380	358	380	0.98
5	10	2e-05	0.004	19.1	1.2	1	23	386	408	386	408	0.99
6	10	0.00028	0.055	15.5	0.8	1	23	414	436	414	436	0.97
7	10	4e-06	0.00079	21.3	0.3	2	23	443	464	442	464	0.97
8	10	5.9e-06	0.0011	20.8	1.6	2	23	471	492	470	492	0.95
9	10	8.2e-07	0.00016	23.5	1.2	1	23	498	520	498	520	0.97
10	10	4.2e-06	0.00082	21.2	0.1	1	23	526	548	526	548	0.99

Sequence Information

Coding Sequence: ATGTCGTTTGAATACATCAATTCGTGTCCAATGAAAAACGAACCATTGGATCAGGATGAAAGTGACCTGGCTGATATGCAAGAAGCAAACAAGTGCGGTGAAGTGGTCGCACAATACGGCGGCAGTTTCATCCTGATTTGTGGATTTTGCCGTGATATCCACGAAAATATAATAACATTTGGATCACATATTAACCAGAAGCACAACGACAAAATGATGAGAATCAACAGTTTGCTGAGATCGAGTCATGATGAGGTGGATCGCGGCAATCAAACACCATCATTCGAGGAAGACATGGTTTGGAGTCCGCCCGTCAGTATGGAATCTTTATATCCTATCGATAAAGTCGATGCCGTACAGTCGGAGGCGAGATCTATTAAAAATGAAGCACTCGGCGTGGATCAGACCACAATACAAGTTCCAGCAGAGCAGCCATTGAAATATGTATGCGACCATTGCGGTCAATCGTACAAGCACAAAGGACGTTTGCAAAGTCATCAGAACAAAAACAGTTGCAGAAAAGTTCTGCCTGGTAGGACATTCGACATGCTCGCACCCACATCGTGTCAAGAAGAGTTGCACTGTAATACAACTCCGAAACGGCGGCAGCTaagaaattcaaacaaacaGTCAACAGTGCCTGAGACAAAAAAACCTACGGAATCGCAACACCACTTCAGATACATTCTTGAAAATCGGGAAGAACTTAAAGAAGAGTTCTCCGGCAGAAGTAATGATATGAAAGAGGAGTCAGTCAGCGAACAAGACAAGCCTCCCGATGATAATCCATCTTCAGATGAAGTTCAGGTCACCAGTAAAGGTAAAGCTTCAAAAGTACAATCCTGCGAGGCTACAGCACCCGCAAAGCGATTCCCTTGTGGAACATGCGAGCGTACCTTCAAGTCAAAACAGGCGCGCACACATCACATAGGTCGTTTTCACGACGAACAATCACCGGCAGGCGATTCGAAAAGCCTGCAACAGTACCTGCGATGCAAGTACTGCAACACCCAATTCGACACGAAGGCAGAATGCACCGCGCACGAAGGCACCCACATCGGCGAAAAGCGATTCATCTGCTGGTATTGCCCGCATACGTTCAGGACGAATTACGGCCGAAAACGGCATATGCGCGTGCACACCGGCGAGCGCCCCTTCAAGTGCACAGAATGCCCGAAAGCCTTTCCGCATATGGTGCAGCTGGACTATCACATTCGCAAGCATAAGAACCTTCGCGAATTTAGCTGCGCCGCGTGCGGCAAAGCATTTTTCCGTAAATTTGAGCTGAGCCTGCACGAACGGAAGCACACCGGCTACCGACCGTTGGTTTGCGAGGATTGCGGCAAGACGTTCAACGTGATGAGCGAATTGAACGAGCACAGGAAGCGTCATACCGACAAAAAAGATTGGAAGTGTGATACGTGCGGCAAATGCTTCTATTCGAAGTGGACATTAAAGGATCATATGGCCGGACATTCGAGCGAGACACCGTTCGAGTGCGAAGTTTGCGGACGGAAATTCTCGCGTGCGAAAGCACTGAAGAAACACAAAAAACTACATTCCGATGTTAAAGCGTACGTTTGCAATATTTGCGGGAAAGCATACGCTCAGGATTCAGGACTTTATGCGCATAGGAAGACGCATGGGATGCGAACCGCGACAATTGATATTAGTCATGTTAATATAGTTACGTAG
Protein Sequence: MSFEYINSCPMKNEPLDQDESDLADMQEANKCGEVVAQYGGSFILICGFCRDIHENIITFGSHINQKHNDKMMRINSLLRSSHDEVDRGNQTPSFEEDMVWSPPVSMESLYPIDKVDAVQSEARSIKNEALGVDQTTIQVPAEQPLKYVCDHCGQSYKHKGRLQSHQNKNSCRKVLPGRTFDMLAPTSCQEELHCNTTPKRRQLRNSNKQSTVPETKKPTESQHHFRYILENREELKEEFSGRSNDMKEESVSEQDKPPDDNPSSDEVQVTSKGKASKVQSCEATAPAKRFPCGTCERTFKSKQARTHHIGRFHDEQSPAGDSKSLQQYLRCKYCNTQFDTKAECTAHEGTHIGEKRFICWYCPHTFRTNYGRKRHMRVHTGERPFKCTECPKAFPHMVQLDYHIRKHKNLREFSCAACGKAFFRKFELSLHERKHTGYRPLVCEDCGKTFNVMSELNEHRKRHTDKKDWKCDTCGKCFYSKWTLKDHMAGHSSETPFECEVCGRKFSRAKALKKHKKLHSDVKAYVCNICGKAYAQDSGLYAHRKTHGMRTATIDISHVNIVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -