Basic Information

Insect: Oxycera nigricornis
Gene Symbol: -
Assembly: GCA_963942545.1
Location: OZ012662.1:84122611-84124162[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.037 7.2 8.8 0.1 2 23 65 87 64 87 0.91

2 11 0.00091 0.18 13.9 2.2 1 23 174 197 174 197 0.95

3 11 1e-05 0.002 20.0 4.2 1 23 240 263 240 263 0.97

4 11 0.99 1.9e+02 4.3 0.4 2 10 276 284 276 298 0.82

5 11 0.00055 0.11 14.6 4.9 1 23 304 326 304 326 0.98

6 11 1.4e-07 2.8e-05 25.9 1.0 1 23 332 354 332 354 0.96

7 11 0.00019 0.037 16.0 2.4 1 23 360 382 360 382 0.98

8 11 0.00044 0.087 14.9 2.7 1 23 388 410 388 410 0.98

9 11 6.9e-06 0.0013 20.6 0.1 1 23 416 438 416 438 0.97

10 11 1.8e-06 0.00035 22.4 2.3 1 23 444 466 444 466 0.98

11 11 4.2e-07 8.3e-05 24.4 0.5 1 23 472 494 472 494 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.037	7.2	8.8	0.1	2	23	65	87	64	87	0.91
2	11	0.00091	0.18	13.9	2.2	1	23	174	197	174	197	0.95
3	11	1e-05	0.002	20.0	4.2	1	23	240	263	240	263	0.97
4	11	0.99	1.9e+02	4.3	0.4	2	10	276	284	276	298	0.82
5	11	0.00055	0.11	14.6	4.9	1	23	304	326	304	326	0.98
6	11	1.4e-07	2.8e-05	25.9	1.0	1	23	332	354	332	354	0.96
7	11	0.00019	0.037	16.0	2.4	1	23	360	382	360	382	0.98
8	11	0.00044	0.087	14.9	2.7	1	23	388	410	388	410	0.98
9	11	6.9e-06	0.0013	20.6	0.1	1	23	416	438	416	438	0.97
10	11	1.8e-06	0.00035	22.4	2.3	1	23	444	466	444	466	0.98
11	11	4.2e-07	8.3e-05	24.4	0.5	1	23	472	494	472	494	0.99

Sequence Information

Coding Sequence: ATGGTTGACTCTTACGAAAACTCATACCTGGAAATGGACACACTTTCAATGAAAGATGACGAACTGGAAGAAGCCGTTGACGACTTGGTTGTCCGAGACATTTGGGAACTTGAAGCAAAACAATCGTATGTCGCTGAACTGAAAGCAAAATGCGGCGAAGTAATATTTGAAAGTATTCAAAAGTTTACTCTTGTCTGTTCGTTGTGCGGCCAACAATTCGAAGACTTGGAAACGTTCGGTGAACACATCCTTGATACGCACTTGAAGTCAAATGACGACGACGATGATTGCAAGCCGTTCGAGTGTCTTTACATGAACGAGATAAAACTGGGCGATACGCTCAACGCTAATGACGAGCGAATGAATGTCGTGGTGGACGAAAATGAGTCTACAACGGAGTCAGACGTCCAGGAAATTGCGAGCGATGTCACCTCCGAAGGGGAGCAAAACTCAACAGATGACGATGCTCGTGACGATGATGAAGCTTCCAGTTCTGTTCAAAAGATGGGCGAAGAATGCTTCCTCTGCACAGTTTGTGGTGCCAAATACAGTCATAAAAGAtcttttttcgcccatgctagGAAGGAGCACGGAATACTTACGAAacgaatgaaattgaaattagaaAAATGCGTTAAGCATGAAAAGTGCACGTCTAGTAGACCAGCTAGTGTTGAAGACGACAAGGATGTTGCGAGCACATCTAGATCTGAAAACTTTTCATGCACAATTTGTAATAGATCATACAAACACAAAAGATCGTTGCTAACGCACATAAGATCATCACATGAAGAAAAATCGATCGCTGCCAAACCCAAGCGAAGAAAGTGCAAGTTCTGTGGCGAGTCCTTCCTCGATAAGCTGGCGCATGAGCTGCATATGGAAGAAAATCATATCGGCGAAACAAAATACCCCTGCACGCACTGCGAAAGATCCTTTCGGACGCGTCACGGTCGTCAAATCCACATCTACACACATACCGGCGAACGGCCTTATTCATGTCCCCACTGCACCAAGGCATTTTCGGTTCAATCAAACCTACAGAAACATATTGACGCCCATTTGAATATTAAAAAGTACGCCTGCCAATTTTGTAGCAAGACATTCGTTCAAAGTTCTGAAAGGAAAACTCACGAAAGACGCCACACCGGGGAGAGACCATTTCAATGTGAACAGTGTGGCAAGCGATTCATTGAACACTCTATTTTGTCTCGGCATCGGATGCGGCACGCGAATATACGGCCATTCAAGTGCGACATATGCGATAAGGCATTTTTCACGGCAGCAATGTTAAATGACCATATCATTGCTCACGGGGACGAGCGCCCGTTCAAGTGCGAGATATGCGATAATAGCTTCTCACGGCGGAAGTCTTTGCGACAACACCAGCAGCTCCATATGACGGTAAAACAGTACACCTGCAAAGTTTGCAACAAAGCCTTTTCTCAGGCTGCCGGTTTATATTCGCATATGAAATCGCATCGCCTAGTTgttaaataa
Protein Sequence: MVDSYENSYLEMDTLSMKDDELEEAVDDLVVRDIWELEAKQSYVAELKAKCGEVIFESIQKFTLVCSLCGQQFEDLETFGEHILDTHLKSNDDDDDCKPFECLYMNEIKLGDTLNANDERMNVVVDENESTTESDVQEIASDVTSEGEQNSTDDDARDDDEASSSVQKMGEECFLCTVCGAKYSHKRSFFAHARKEHGILTKRMKLKLEKCVKHEKCTSSRPASVEDDKDVASTSRSENFSCTICNRSYKHKRSLLTHIRSSHEEKSIAAKPKRRKCKFCGESFLDKLAHELHMEENHIGETKYPCTHCERSFRTRHGRQIHIYTHTGERPYSCPHCTKAFSVQSNLQKHIDAHLNIKKYACQFCSKTFVQSSERKTHERRHTGERPFQCEQCGKRFIEHSILSRHRMRHANIRPFKCDICDKAFFTAAMLNDHIIAHGDERPFKCEICDNSFSRRKSLRQHQQLHMTVKQYTCKVCNKAFSQAAGLYSHMKSHRLVVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01127737;
90% Identity: iTF_01127737;
80% Identity: -