Onig029975.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxycera nigricornis
Gene Symbol
-
Assembly
GCA_963942545.1
Location
OZ012661.1:98607489-98611747[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.015 3 10.0 0.1 1 23 245 268 245 268 0.97
2 16 0.001 0.2 13.7 0.5 1 23 313 336 313 336 0.97
3 16 0.0025 0.49 12.5 0.2 2 23 409 431 408 431 0.95
4 16 0.00011 0.022 16.8 0.5 1 23 442 464 442 464 0.98
5 16 0.21 42 6.4 7.8 1 23 470 493 470 493 0.96
6 16 5.1e-05 0.01 17.8 5.4 1 23 519 541 519 541 0.99
7 16 0.0053 1 11.5 1.3 1 23 547 570 547 570 0.94
8 16 0.00022 0.043 15.8 1.6 2 23 581 602 580 602 0.97
9 16 0.00011 0.022 16.8 0.2 2 23 608 629 608 629 0.97
10 16 0.0015 0.29 13.2 0.9 1 23 635 658 635 658 0.94
11 16 7.4e-05 0.014 17.3 4.0 1 23 668 690 668 690 0.97
12 16 2.9e-05 0.0056 18.6 2.1 1 23 696 719 696 719 0.98
13 16 1.2e-06 0.00023 23.0 0.8 1 23 727 749 727 749 0.99
14 16 0.16 31 6.8 0.1 2 23 756 778 755 778 0.91
15 16 0.0012 0.24 13.5 0.7 1 23 788 810 788 810 0.99
16 16 0.0061 1.2 11.3 0.2 2 23 817 839 816 839 0.95

Sequence Information

Coding Sequence
ATGTTGCCCCGAGCTCTGTGTCGAACGTGTTTGACCACAAACGGAACGTTGTACGATTTGTTCGGCCCGGCCGAGGCGCAATTGGAGCAAGGCAAATACAGAGTGGCCGAATTCGTGGGATTGTTGACAAAATCGGAGATCGAAGAAGATGACGGTTTGCCCGTTCAAATTTGCCAGTCCTGCTACTTTGAGGCTCAAAGAGCCTATGTATTCAAGACGAAATGCGATCGTTCGCAAGCAGTTTTGACTCAACTGAAAAATGTGAAGATTAAAATCAGAAAGCTTAAATCAGATAACAGTACAGATACGAGCAAAAAGAAATCAATGCTCCTTATAAATGGATTCAATCAGATACACAGCTTTCCGAATAACAATCTCGTGACATTGAATCCATCGTCCAATAAAATAGCGCTCTTGTTCAGCACCCCTGTAACGAATGCTTTGAAAAGCAATGAAGCTTGTTCCACCAAGTACGTTGAGTTTATCGATGATCCGTTGAATTTGATCGAGTTCGAAGATCTTGGCGGATCACAAATGAACCCGACCACTTTTATGGATGTGGACAATGTTGTGGTGAAGGAAGAAGAACTCTCGGAATTGTCCAACACCTTGGAAGAGAATATGATAAACGCCATCGCAAATAATGTGATGACTGACAATATTACAAGCTTTAAGGCGAAAACGTTGCTGGCTGCTAAAGATGGAATAGATAATCCAGCGGAAGAGCAAAATTTCGAATGTCCGGCGTGCCCCTACGTGCATGTTTCATCCGAAGGCTTGGAGAAGCATATGATGAAGGACCATATGGCCGAGAATATTTGTACGATTTGCAATAAAGATATAGATGGTTACGAAAAAGAACATTTCGCTCATCATATTGCACCGCAAGTAGACTACGATGAAATCATCGAGGGAACGACTCTGATTGGGGGCGATTATCAGTGTTCGCTGTGTTCGCAGTACTTCAAACTGCGCGTTGATCTCGAAAACCATATTAATAATGTTCACAATAATTTTCACAACATGTTTGGTGGTACTGTAGAGAAAAATGAGCAGTTGATTGTTGATGATAGTGTGAACAAAGTAGAAAACTTCCTATTCAACGAAATAATTGAAGAGACAATGGAAGAAGATGCATTCCAGGCGACAGTTTCGTCGCATACATTTGAAACGAAAGATAGTACGTTAGAAGGCAATCCAATTCAAGTTCCAAACAATTTGTTGAGCTGCAAATTTTGTGTAAGCACATTTTCCACGCCGGATGCCTTAAATGATCACGTGAAAAGCGCACATTCAGTTCAAAATAACAATGGCCAAACAGTCTACAGTTGTGATTCTTGCAGCGAAACGTTTAATGACAAGGCCTTGTTGACTGAACACTACAAGATACACAGCAATGATAGGCCATACAAATGTGATTCTTGTGTCCAAACGTTCCGCTTTAAGCACAACTTGGAATGCCATATGCGCTTCAAGCACTGCCTAGCCTGCAAGGGAATGAAGAATAAGGACTGCAAAACATGCTTCGTGAAGCTAGGCGGCGACGATCAGCGATACAAATGCGACGTGTGCCACAAGCAATTGGCTAACAAGTCAAGCTTGTGTCGTCACCGAAGAGTGCATGTGCAAGATAAACCTTTCAAGTGTGAGTATTGCCCGCAGAGTTTTAATTACAAGCAGATTTTAAATTTGCATGTGAAAGAAAAGCACGAACAATCGGAATCTTCTGACGGAGACCTAAAGTGCCAGACCTGCTCGCATATATTTGTCAATAAAGAAGAATTATTGATTCATATGAAATCACACGAGAGCAAAGCTCGCAAGTGTCCGTATTGTCCGCAGAGCTTCGATCTTCAAAGTATGCTTATATATCACATGAGCGAGCACACAGATGGTGATGGCTTCAGATGTGTGGTATGCACGCAAAGTTTCAACTCGGAAGAGGAGTTTAAAACACATATTACAGAAAAACATATTGACTCTGCCGAGGATAAGACGGTTTTTAAGTGTAATCAATGCCACCAAGTATTTGACCGAAAAGAGAATCTTACAGAACACTCCTATACTCACCTGGTGAAAAAACCATTCGAATGTGAAATCTGCAATCAAACTTTCCGATACATCCAAAGTCTGACGCGTCATACAAAAACTTATCATTCAATAGGAACGTCGCAAAACTACCAATGCCAACTGTGTCCGAAAACCTTCACTGATCGAGGCGAGCTAGTGAGTCATTTTAGGACACACACAAATGAGAAGGCATCCACTTGTGAAATATGCTCGGAGCAATTCCCGGACAAATTAAGACTAGGAGCACACATGGTGTTGAAGCATGATGCCAAAGGCCTCCAAAAGCAACATTTCAAATGCGAGCAATGCTCCAAGGTGTTCTGGAACAAAGTGCTTTATGAGATTCACTTGAAAATGCATAATGCAGATGATTCGACCTCGTGTAAGCTGTGTGCGCAAGAGTTTCCTTCCAATCAACAGCTGAAGGAACATATTGACAAAGCCCATGTAGAAGGCGTATATCAACAGCTCACGCAAGTGGGCGAACAGTGTGAAGTCAGCAACAACACGACCGTGCTGACCAATAACACAAATGTAGTTTGCGAAAACAATGTTGGTGGAAATAATTTCGTTTTCGGGGACGCCTTCCTCAATAACGATCAGATGATGGACATTCAGGCGCCAGAGGCTATCATGAACGAAATCTTCGATGAGTCAAGTATAGAGGTTGCTTAA
Protein Sequence
MLPRALCRTCLTTNGTLYDLFGPAEAQLEQGKYRVAEFVGLLTKSEIEEDDGLPVQICQSCYFEAQRAYVFKTKCDRSQAVLTQLKNVKIKIRKLKSDNSTDTSKKKSMLLINGFNQIHSFPNNNLVTLNPSSNKIALLFSTPVTNALKSNEACSTKYVEFIDDPLNLIEFEDLGGSQMNPTTFMDVDNVVVKEEELSELSNTLEENMINAIANNVMTDNITSFKAKTLLAAKDGIDNPAEEQNFECPACPYVHVSSEGLEKHMMKDHMAENICTICNKDIDGYEKEHFAHHIAPQVDYDEIIEGTTLIGGDYQCSLCSQYFKLRVDLENHINNVHNNFHNMFGGTVEKNEQLIVDDSVNKVENFLFNEIIEETMEEDAFQATVSSHTFETKDSTLEGNPIQVPNNLLSCKFCVSTFSTPDALNDHVKSAHSVQNNNGQTVYSCDSCSETFNDKALLTEHYKIHSNDRPYKCDSCVQTFRFKHNLECHMRFKHCLACKGMKNKDCKTCFVKLGGDDQRYKCDVCHKQLANKSSLCRHRRVHVQDKPFKCEYCPQSFNYKQILNLHVKEKHEQSESSDGDLKCQTCSHIFVNKEELLIHMKSHESKARKCPYCPQSFDLQSMLIYHMSEHTDGDGFRCVVCTQSFNSEEEFKTHITEKHIDSAEDKTVFKCNQCHQVFDRKENLTEHSYTHLVKKPFECEICNQTFRYIQSLTRHTKTYHSIGTSQNYQCQLCPKTFTDRGELVSHFRTHTNEKASTCEICSEQFPDKLRLGAHMVLKHDAKGLQKQHFKCEQCSKVFWNKVLYEIHLKMHNADDSTSCKLCAQEFPSNQQLKEHIDKAHVEGVYQQLTQVGEQCEVSNNTTVLTNNTNVVCENNVGGNNFVFGDAFLNNDQMMDIQAPEAIMNEIFDESSIEVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-