Onig011934.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:1290711-1293612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0004 0.079 15.0 0.5 1 21 176 196 176 197 0.94 2 14 0.017 3.2 9.9 0.1 1 20 204 223 204 225 0.93 3 14 0.1 20 7.5 3.7 1 23 232 254 232 254 0.98 4 14 0.005 0.98 11.6 0.5 2 23 261 282 260 282 0.93 5 14 0.01 2 10.6 3.6 1 23 296 318 296 318 0.94 6 14 1.1e-05 0.0021 19.9 2.6 1 23 324 346 324 346 0.98 7 14 8.7e-05 0.017 17.1 0.4 1 23 354 376 354 376 0.98 8 14 6.4e-05 0.012 17.5 0.0 1 23 382 404 382 404 0.99 9 14 6.3e-06 0.0012 20.7 0.6 2 23 411 432 410 432 0.97 10 14 6.1e-05 0.012 17.6 1.3 1 23 438 460 438 460 0.97 11 14 2.2e-05 0.0044 19.0 1.7 1 23 466 489 466 489 0.98 12 14 0.027 5.2 9.3 1.0 2 23 498 519 497 519 0.96 13 14 5.9e-06 0.0012 20.8 1.9 1 23 525 547 525 547 0.98 14 14 0.01 2.1 10.6 0.8 2 23 554 575 553 575 0.97
Sequence Information
- Coding Sequence
- atggctttggattccggggccgataTGAAGGAGGATGACGAGCAAGTAGACGAGGAGAAGGACGAGATTGCCGAGACTTTGATGGAGGAAGatcagATCGATTGGAATGATTTTCTGCCACAATGCCTGTGTGTAGAATGCATAGAACAATTGGAGCTAGCGTTCTACTTCAAAAATCAATACGAAGGCACTCTTCACAAGTGGAAGGACATCGCCGCTCAAAAGTCAGCAGGTCAATCAACACTTCCCGAAGTCGGTATTTGGAAAAGTTTCGTGAAATTAGAGCGAAATACCAACGAGAATGGTGTCCTGACGACTGAAGTAATTGTTAAGGAGGAAATGTACTCCGACACGGAACTTGAGACGATGACAACGGCTGTTCCTGATGCGTATTCCACATTCGATCAGATTGCGAACCATGTGAAAACAGAAACAGCCTGTGAGCAACATGCAACTGGGAAAAACATAACTGAAAAATCTGATCCCAAGAAAAAGTCTCCCGCCTTGACCAACAAGTCTATCCGTTTTGAATGTTCAAAGTGCAAACAATCATTTGCCAGTCGTCGTTGGTTGCGAATacacgaaaaattgaaaagatgtCCTCCGAGGCATAAGTGTGATCGATGCGGAGTCGCATTCCCGACCGAACTTGATCTGGCGAATCACAAACTGCAGCCATGCAAGCTCAGTCCTTTTAAATGTACGGTGTGCTCCCAAGTGTTCTTACGACGCTGCAGGTTGGATAAGCACGCAAGGATGCACACCAACCGCAATGACATGAAATGCATCGAATGCGGTAAACAATTCAAGAATAAATTAGCGTGGATGGTCCACCGAAAGATACACTTGGACGGCGAGATGTCACGAAACGCTCAAAGGAACCAATACACCTGTGAGCAATGTGGCAAATCGTTCCATAAAAGGTTTATATTCACGGACCACATGACGTGGCATGCAAATCCCGATGCTTTTAAATGCAGACAATGTGGCAAAACATTCCAGACGAGGAAGTCTTTACGGTTACATGGAAGAGTCCATCCGAGTCCTGGTGATAAGCAGTTCAAATGCACCACTTGCCGAAAAAGCTTCGCTGATGAGGTTGGTCTGGAAGACCATACAAAGTGGCACGCTAATCCGAATTGCTTCAAGTGTGGAGATTGTGGAATAGCGTTCGGAGGAAGCCAAACATTGGAGGCGCATCAGGCAACCCACTTGGACTCGGAAGTGCTAAAATGCGACCAATGCGAGAAAGTATTCATAAGATTGAGTCGATTGAAGGCTCATCAATTGACGCACACCAGCCCCGAACTATTCAAATGCGAGGAATGCAACAAAGTTTTCAAAACGCTTTTCAAGGTCAAGGAACATCAAGAGTGGCACAAGAATCCGGATCTCTTCAAATGCGAGCTTTGCAATAAGAGCTATAAGGACAACGAGGCGCTGAAGGGGCACACGAAACGATTTCATATGAATCCCGATGACAATGCCTTGAAATGCGAACTGTGCAACAAGGAATTCTATATGGTTAGGCGATGGAAGGATCACATGAAGCTACATTCAAATCCAGACGCGTTCAAGTGCAAAGAATGCGGCAAAGTGTGCAATAGCAGCGAAAGATTGAAGGCGCACATGGTCTCGCATTCGAGCCCGAATGGACTTAAGTGCGAGCAGTGTGGTAAGGTGTTGGCAGAGCCTCACATTTTCAGGCGGCACCAATTGAGGCACATGCAGAGCACCAAAGAACAATAA
- Protein Sequence
- MALDSGADMKEDDEQVDEEKDEIAETLMEEDQIDWNDFLPQCLCVECIEQLELAFYFKNQYEGTLHKWKDIAAQKSAGQSTLPEVGIWKSFVKLERNTNENGVLTTEVIVKEEMYSDTELETMTTAVPDAYSTFDQIANHVKTETACEQHATGKNITEKSDPKKKSPALTNKSIRFECSKCKQSFASRRWLRIHEKLKRCPPRHKCDRCGVAFPTELDLANHKLQPCKLSPFKCTVCSQVFLRRCRLDKHARMHTNRNDMKCIECGKQFKNKLAWMVHRKIHLDGEMSRNAQRNQYTCEQCGKSFHKRFIFTDHMTWHANPDAFKCRQCGKTFQTRKSLRLHGRVHPSPGDKQFKCTTCRKSFADEVGLEDHTKWHANPNCFKCGDCGIAFGGSQTLEAHQATHLDSEVLKCDQCEKVFIRLSRLKAHQLTHTSPELFKCEECNKVFKTLFKVKEHQEWHKNPDLFKCELCNKSYKDNEALKGHTKRFHMNPDDNALKCELCNKEFYMVRRWKDHMKLHSNPDAFKCKECGKVCNSSERLKAHMVSHSSPNGLKCEQCGKVLAEPHIFRRHQLRHMQSTKEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -