Onig001772.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oxycera nigricornis
Gene Symbol
-
Assembly
GCA_963942545.1
Location
OZ012659.1:10741145-10742629[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.5 1.7e+03 1.4 0.4 2 23 85 106 84 106 0.88
2 13 0.1 20 7.4 0.2 1 23 156 179 156 179 0.96
3 13 0.00015 0.029 16.4 3.1 3 23 189 209 188 209 0.98
4 13 2e-05 0.0039 19.1 0.5 1 23 215 237 215 237 0.98
5 13 0.0001 0.021 16.8 0.9 1 23 243 265 243 265 0.99
6 13 9.4e-07 0.00018 23.3 2.0 1 23 270 292 270 292 0.99
7 13 5.4e-07 0.00011 24.0 0.8 1 23 298 320 298 320 0.98
8 13 4.5e-06 0.00088 21.2 3.0 1 23 326 348 326 348 0.99
9 13 0.00026 0.052 15.6 3.6 1 23 354 376 354 376 0.98
10 13 1.1e-06 0.00022 23.0 0.7 1 23 382 404 382 404 0.99
11 13 6.1e-07 0.00012 23.9 1.9 1 23 410 432 410 432 0.99
12 13 5.6e-05 0.011 17.7 1.7 1 23 438 460 438 460 0.99
13 13 2.2e-07 4.3e-05 25.3 1.0 1 23 466 489 466 489 0.97

Sequence Information

Coding Sequence
ATGGCTGGGAAAATGCTTGAAATGAAAAGCATTCTGCTTGCGGACTTTATGGCCGACAGCTGCAGCCTTTCGGCATGCGACGAGAGTCGAGATTCGGAGTTTGCGTTGACGGAGGACCAGATCCTGACCGAGGATCAGATCAAGAAGGAGCCAGAGTTCATAATTGAAGACGACGACGAAACTGCAAAACTGGCACGTTTCATGCGAGAAAGAAACTTGGAGGAGGGCTCGAAGCCAGATCTGGAATGGCACAGTTGCATTGTGTGCGAGGAGCGGTTCCTCAGCATCGAGGATTTGTCGTTGCACGTCCAGAAACATGTGAAGAATGAGCCGGGCCGAAGGAAGGAGATGAGTAAGTCCAAGCGGCGCAAGTATGGGATCCGCTCCGAGTACACAGGGTTCACGCGCGAGGAGCTCTTTCGGGACTACGTGAAGGTGAAGGTCAGTCTGCACGGTGACGCCAGCTATGTGTGCAAGCTGTGCCCAGACAGCGTGTTCCAGACGTTGACTGCCATTCGGAACCACATGCGGATCCACGAGAACCCTGTCTACAAAGACCGGAACTGCAACGTCTGCCACCGGACGTTCCTGCGCCGCGACACCCTGCTCGTCCACATGCGGACGCACACACGAGAGCGGCCGTTCAGCTGTGGTATTTGCGATGCCACCTTTGCACATTCCAGTTCCCTGGTGTCGCACAATCGGATCCACACCGGCGACAAACCGTACGAGTGCGATGTGTGCCACATCAAGTTCCGCGAGTCCGGGCAAATGTCGGCCCACCGGCGCATCCACTTCGATAAAACATTCCAGTGTCCGCAATGCAAGCAATATTACTCCTCCTCGAAGAATCTGCGCGCCCACCTGCGCACTCACACCGGCGAACGGCCCTACAGGTGCGATCAGTGCGATAAATCCTTCCGCACGTCTACCGCTCTTACGCTCCACGGCCGCGTGCACACCGGCGAGAAACCTTACAAATGCACCACTTGCGGATTCGCCACCAAGCAATCAGGATGCCTGAAGGCGCACATGCGGACGCACACCGGGGAAAAGCCCCACAAATGTGATATTTGCGAGCGCTCGTACTCGGAAAAGAAGAGGCTGGTCACGCACTACAGGACCCACACCGGCGAGCGGCCGTACAAATGTCCTTTTTGCGAATCGGCCTTCATACGCAGCGATAATCTGAAGACGCATGTGCGCACGCACACCGGCGAGCGACCGTTCAAATGCGAAGTTTGCGAGAAAACGTTTGCGCAGAAGACCACGCTGAGGACCCACGAGCGGACGCACTCGGGCGAAAAGCCGTACGAGTGCAAGTACTGCAAGCAGCGCTTCCGCCAATCGGGCATTCTGGTAACGCACCTTCGCACGCATGAAGGCACGGCACCGTTCCAATGCCAGCTTTGCGACAGAGCTTTCAAGCAAAATGGCAATTTGCGGCGACACTACCAAGTTGACCACAACGGTGATGGTTACTAG
Protein Sequence
MAGKMLEMKSILLADFMADSCSLSACDESRDSEFALTEDQILTEDQIKKEPEFIIEDDDETAKLARFMRERNLEEGSKPDLEWHSCIVCEERFLSIEDLSLHVQKHVKNEPGRRKEMSKSKRRKYGIRSEYTGFTREELFRDYVKVKVSLHGDASYVCKLCPDSVFQTLTAIRNHMRIHENPVYKDRNCNVCHRTFLRRDTLLVHMRTHTRERPFSCGICDATFAHSSSLVSHNRIHTGDKPYECDVCHIKFRESGQMSAHRRIHFDKTFQCPQCKQYYSSSKNLRAHLRTHTGERPYRCDQCDKSFRTSTALTLHGRVHTGEKPYKCTTCGFATKQSGCLKAHMRTHTGEKPHKCDICERSYSEKKRLVTHYRTHTGERPYKCPFCESAFIRSDNLKTHVRTHTGERPFKCEVCEKTFAQKTTLRTHERTHSGEKPYECKYCKQRFRQSGILVTHLRTHEGTAPFQCQLCDRAFKQNGNLRRHYQVDHNGDGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01376062;
90% Identity
-
80% Identity
-