Onig032540.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012662.1:17503188-17508173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00051 0.1 14.7 1.1 1 23 292 315 292 315 0.97 2 13 0.0016 0.32 13.1 0.0 1 23 378 401 378 401 0.91 3 13 0.0001 0.02 16.9 2.6 1 23 409 431 409 431 0.98 4 13 0.00021 0.041 15.9 3.6 1 23 438 460 438 460 0.98 5 13 3.6e-07 7.1e-05 24.6 0.5 1 23 466 488 466 488 0.99 6 13 1.4e-05 0.0028 19.6 1.4 1 23 495 517 495 517 0.98 7 13 1.8e-05 0.0035 19.3 0.4 1 23 523 545 523 545 0.95 8 13 4.4e-05 0.0087 18.0 0.3 1 23 551 573 551 573 0.98 9 13 1e-06 0.0002 23.2 0.5 1 23 579 602 579 602 0.96 10 13 9.2e-06 0.0018 20.2 1.6 1 23 608 631 608 631 0.97 11 13 6.1e-05 0.012 17.6 2.8 1 23 637 659 637 659 0.99 12 13 0.00026 0.051 15.6 0.7 1 23 665 687 665 687 0.97 13 13 0.00098 0.19 13.8 0.2 1 22 693 714 693 717 0.92
Sequence Information
- Coding Sequence
- ATGACTGATGTGGTCGGAAGCGACGAATCCTTGTCACTGACTTGTTATATTTGCGGCCGCGAAACTGTCCAGGGAGACGTTGCATTCTGCTTGTTCAGCCAACGGCTTGGCAATGGCGAGCAAATTTCAACGATATCGGAAGTGTTATCGACGATACTGTCCTACGAAATCACTGAGGAAAACGCGCATTCTAAGATAATCTGCGAAGAATGCAACCACCGCTTGAATAAATATGAAGAGCTCGAACAACAAATGCTGGAAATCAGATATAAAATAATCCAGGATTTCAGTGTAACATCACGACTAGTCGATGGCGATATTCAATTTGAGATAGAGGAAGCATTCGATGTGGGTATCGAAGATCAGCTAGATCAACAACAATCCGAAGTTGATGTCGACGCAGCTATTGATGATAAAAGTCATGTGACTACTACCAACGACATTACCTCAAACAATGATCTCTTGTCGTTACTTTCGGGTCATAAGGAAGTGGCCGAAATCCAAGGCAATGATGCTGTTAATAATGGCATACTCGTAAAGGAGGAAAATATCGAATTAGAACTGGATGAAGAACAGTATTTCGATCCGAACACTGGAAATATGGTGGAAATAATGACGGAGAACGATGACTACCATCAGCTTGGTGAAGAATCTCAAGAAGATCGAAATAGTTCAAATGGTGAAAATGGAGAGAACACCAAAGAAACTGAAGAGCAGGACGGAGGTCATGAAGCGtcgtatatatttttcaatggtCTCAAATATATTTGTTTGCTCTGCACGTCAAATTCAGCGAATGAAGATGAAACCAATCAATACGATGATGTAGATACAATTTACGATCACTTGAAAACGATTCATGATACTACCGCCTTCATCTGTCGCATTTGCGGTCAagatttttccaaagaagaatATTTCGAAGAGCACCGACGTAAAAGGCACGGTAGAGGCGATGGAATTAAAGCCTCGGTGAAAAGCGAACCTGCTGAAGAACCGAAGGAGTACTACACATTTAATGGAGAGAACTTCGGATGCCTAATATGTCCCCAGGGATCGGAAGCAGCGAATACGAAATGCACGGCGCGAACCATGTCAGTGCATTTTAAGACTGTCCACAATCTACGACTGTACATCTGCGACATTTGTGGAGTTGACTTTAAGAAACGAATGGAGTTGACCGAACACGTTGATGAAGCGCACGGTGGAACTGAAGATGGCGAGTTTCAATGCGATACTTGCAGTCGAGTTTTCACGAACCTTCGGCAGTTCCGAATTCACAAGCGACTACATTACACTTCGACCAAAGCATTCCATTGTAGTCAGTGTAATAAGAGGTACAGCTCAAAGAATCTTCTCGATGAGCATATGAACATGCATACTGGAATGCGTCCGTACAAGTGTCCCAACTGTCCCAAAGATTTTGCTTCCAAGTATACGTTAACCGCTCATGTGAAGACTCATACGGATCGCCCCAGGCCCTTTGTATGTAAGCAGTGTAACAAATCGTTTTTCAGTGCACAAAATCTCATGCAGCATGAGAAGATCCACTCCGGGCAGAAAGATTTTGTTTGCGATATTTGCAACAAGGCGTTTGCAACGCAGCACAATCTAGATGTGCACAAAGTCGTGCATACTGGCTATAAGCCGTTCATATGTCGTACGTGCGGGAAGGCGTTCGCGCGACGGGCTGAAATCAAGGATCACGAACGCACCCATACCGGTGAGAGACCGTTCGTGTGCGACATCTGCGACATGTCGTTTGCGCAGCGCTCGAATCTCACCACTCACAAGCGAGCGACCCATTTGAATGATAAGCGGTACAAGTGCGAGGAGTGTAATAGGTCTTTCAAACGTCGCCGTCTATTGGACTATCATATTCGAGCATCACACACAGGCGAAAGACCTTACCGTTGCTCGATGTGTAGAGCAACGTTCGTTTATCCAGAGCACTACAAGAAACACCTGCGAATACACAGTGGAGTCAAGCCGTACTCGTGTGAAGTTTGCGGGAAGTTATTCAACAGTCGGGATAATCGCAACGCCCATCGGTTCATACACAGCGACAAAAAGCCATACGAGTGTCTTGTTTGCGGCCAAGGATTCATGAGAAAGCCGCTGCTTTATACTCATATGCAGCAATCAGGTCATGTGAACGACACAATAATCATTAACCAACCTCGCATTCTTACTGAACCTGACGGGGCCAAAGCCAACGTCGAAAAcgttttgtttgaaattgttCCCGACGATGAACTTGTCGAAGAACAATTGATTGATGGGCCAAACCAATACGGTACGAGCGCCGATGAAGAAATGGATGATGTGATCGATACGGCCGACGATAATTCCATTTCGAATGATCTTCTCGACAGCGATCTGACCGAAGTGATGAACTCCGAACAGTTTGTAGTGCGTTACGAAGGTGACGCAGAACCAATGCAATTAGTTCAAATTCGCACAAAGGACGAATCGGGTAAAGATTCATTTACTTGGGTGAATTTGGTTGCTGAGAAAGAGAGCTGA
- Protein Sequence
- MTDVVGSDESLSLTCYICGRETVQGDVAFCLFSQRLGNGEQISTISEVLSTILSYEITEENAHSKIICEECNHRLNKYEELEQQMLEIRYKIIQDFSVTSRLVDGDIQFEIEEAFDVGIEDQLDQQQSEVDVDAAIDDKSHVTTTNDITSNNDLLSLLSGHKEVAEIQGNDAVNNGILVKEENIELELDEEQYFDPNTGNMVEIMTENDDYHQLGEESQEDRNSSNGENGENTKETEEQDGGHEASYIFFNGLKYICLLCTSNSANEDETNQYDDVDTIYDHLKTIHDTTAFICRICGQDFSKEEYFEEHRRKRHGRGDGIKASVKSEPAEEPKEYYTFNGENFGCLICPQGSEAANTKCTARTMSVHFKTVHNLRLYICDICGVDFKKRMELTEHVDEAHGGTEDGEFQCDTCSRVFTNLRQFRIHKRLHYTSTKAFHCSQCNKRYSSKNLLDEHMNMHTGMRPYKCPNCPKDFASKYTLTAHVKTHTDRPRPFVCKQCNKSFFSAQNLMQHEKIHSGQKDFVCDICNKAFATQHNLDVHKVVHTGYKPFICRTCGKAFARRAEIKDHERTHTGERPFVCDICDMSFAQRSNLTTHKRATHLNDKRYKCEECNRSFKRRRLLDYHIRASHTGERPYRCSMCRATFVYPEHYKKHLRIHSGVKPYSCEVCGKLFNSRDNRNAHRFIHSDKKPYECLVCGQGFMRKPLLYTHMQQSGHVNDTIIINQPRILTEPDGAKANVENVLFEIVPDDELVEEQLIDGPNQYGTSADEEMDDVIDTADDNSISNDLLDSDLTEVMNSEQFVVRYEGDAEPMQLVQIRTKDESGKDSFTWVNLVAEKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -