Onig012124.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:2699520-2708805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.7e-05 0.0092 17.9 2.0 1 23 285 307 285 307 0.98 2 21 7.9e-06 0.0015 20.4 0.4 1 23 312 334 312 334 0.98 3 21 0.0091 1.8 10.8 8.2 2 23 340 362 339 363 0.94 4 21 0.00021 0.04 15.9 0.7 1 23 368 391 368 391 0.94 5 21 1.4e-05 0.0028 19.6 2.0 1 23 397 419 397 419 0.97 6 21 0.025 4.9 9.4 0.8 2 23 439 460 438 460 0.97 7 21 0.019 3.8 9.7 4.8 1 21 466 486 466 488 0.95 8 21 5.4e-06 0.0011 20.9 2.0 1 23 494 517 494 517 0.98 9 21 2.9e-05 0.0056 18.6 2.6 1 23 523 545 523 545 0.98 10 21 0.0015 0.3 13.2 0.1 1 23 551 574 551 574 0.94 11 21 6.6 1.3e+03 1.8 0.1 1 16 650 665 650 667 0.83 12 21 0.00032 0.063 15.3 2.5 1 23 861 883 861 883 0.98 13 21 0.00064 0.13 14.4 2.3 1 23 888 910 888 910 0.98 14 21 0.13 25 7.2 4.9 2 23 917 939 916 939 0.94 15 21 6.5e-05 0.013 17.5 0.3 1 23 945 967 945 967 0.96 16 21 1.9e-06 0.00037 22.3 2.4 1 23 973 995 973 995 0.98 17 21 0.021 4 9.6 6.8 2 23 1016 1037 1015 1037 0.96 18 21 1.8e-05 0.0035 19.3 1.6 1 23 1043 1065 1043 1065 0.97 19 21 0.008 1.6 10.9 0.3 1 23 1071 1094 1071 1094 0.91 20 21 6.5e-06 0.0013 20.6 2.5 1 23 1100 1122 1100 1122 0.97 21 21 9e-06 0.0018 20.2 1.0 1 23 1128 1150 1128 1150 0.95
Sequence Information
- Coding Sequence
- ATGAACATGGAGTGTATGTGTCGTGTTTGCGAAACGATATATGGGCTGCGGAACATGTTCGAGGAGGAAAACGAAGAGTTGTTGCTGATGCTGCGGTCGGTGGCCAACATTACTATTACTGCCGACGACCTCCTGCCTAAATATCTTTGCAACCTTTGTTCGCATCGCTTACAAAAATCGTATGACTTTAAACTGCAATGCGAGTTGACCGATCAAAAGTTACGGGATACCATTGAACCGGACAAAGATCATTTCCTGGACACAGAACTAGAAACTAGTCAGGTGAATGAAAACACTATGGAAGAGATGCTGTACAGACGCTTGTATGAAAAAGTAGTGGGAGGCAATGCAACGGAGGAATCCACTTTCGAAGACTACGCAACATTCGACTATATAATCGCCGAGGAGAAGGGCGACGTACAAAAGGCAGAAAATACAGCAGCGCAGGAAAGCCCAACGATAGAAGCGAACATAGCAGCAGTAACATCAACTACTGCGGAAGCGGCAAAACAAATACTTAATGAAAATGCGGTGGTTTATGTGGACAACTCCAAAGTCGAGGAAATCGGTTCAAAGTTTGACGTTGTTGAGGAAAACGCACAATTCGAAGATATCATTGAAGAAGACTATTCAGAAGAGATGCCCGTAGCTGAGCATATCGAGCCAAAAAAGGAGGAAGCGAGTGAGGTTCCAGTAGTTGTTCCCGAACCTAATGACGAGCAGCCGCATCCAAGCAGCGAATCCTGTGTCACAGAAGTAGAAAAAATGGTTTTAGACCCAGCACCAAAAGAAACTAAACCGGTCGTCGCGAAACCACCAGCTAAGGTCAAAGCTCGAAAAGAGCCGAAAGTATACTCATGTGGTATGTGCACCGAAACATTTGACTCGTCGAGCAAACTGAACAACCACAAAAGGAAGCACGCTCGCTATCGTTTCCAGTGCACTGTCTGCAATAAATCGTTTGGAAGATCTAACGGATTGAGGGATCATCTGTTAGTTCACATTGGAAAGAAAGTTTCCTGCCATTTATGTGATAGGCAATGCTCGAATCGAGGAAATTTGATGCGGCATATTCAACAATGTCACCATAAATTGAAGCCATATAAGTGTGACCATTGCAGCGTGAAATATTCTCGAAAGGCTTCCTTGTTAGCACATATTGCGGCGTACCACGAAGAAACTCGAGAGCATCCGTGCGACATCTGCGGAAGAGTGTTCAGGACTACATTCTACTTAGCGACACATCGAAGAAGGCACTTGCCACAACCTCCTCGACCGCCGTACCATCAGGCAAAACGCAAGGAGAAAATAAGCTACTGCCCGCAGTGTGGCAAGAAGTCAAGATCTTTGCCAACTCATATTGCGCACATGAGGATCCACTCCGAAGTGAAGGCGTATGCTTGTCAAGAGTGCCCGAAACGGTTCCACTTCAAGCAGTCCTTGCTGACTCACATGATGTGTCACACCGGCGAGCGACCGTATAAGTGCGAAGCCTGTGGAAAATCTTTCCGTCAAGTGGCTCACTTGCGAACTCACACGAAAACAGTGCACATGGGTGCAAGAGAATTCCAATGTCAGTATTGTCGGAAATTTTTCACCAGCTCGGGCACTCTGAAAATCCACGAAAGATTGCATACTGGTGAGAAGCCCTACGCATGCGACATCTGCCCTAGCAAATTTATAGATTCGAAGGGCCTCAAAAAACACAAAGCCTCGGCACACAGCAACGACAGATTCGAAGCGACAGAAAATAGTGAGGAGCAAGGTGGCGACGATGACACTAACCAAGAAAACGAGGATGAAGATGATTCTCAAATGAACGAACTTCGGGCGATCCCCGAAGAACAAGTGCTCGACGAGGGACATTTTACGATTGACCAATCAAACATTTATTTCGACATTAGTAACGAGTACGCGGAGGTTGAGGCAGACGATCTTTTGCCGAAATACATTTGCGCTATCTGTGATCAAAAGCTGCGTCAAGTTCACGACTTTATAAAGAAGTGCGAAGAAACAGACCAAAAACTGCGCAAATCATACCAACTAGACCAGCGACACCATCGCACAAGGACACAAGACGGCGTGCCGAAGAAACACAATCAACGTGAAAAACGCGATGTCTTTGCGAATGTGAAAAACTCTAACAAAATTCCTGCTGACAGTGACGATTCGTACTATGAAGTGAATCAATTGAAGCGAAGAGCTTCTAATGACGAGGATTGCATAGACTTTATTTATCAAAGTAACGAGAACGTGGAAGACATTAAAAGTGAAGAAGAGTCCTCCGTTGGTGAAAAAGAATTCGATAACATCGACGACGATGCCGAATTCCTGGAAGAAATTCAGTACACGTATTCTCCGGTCGTTGCATCAAACAGCGGGATTGCCGATCAAATGGGCCGCCCAGACAATAGCGTCCCTCAAACGCATGTCTTTAACGTTGACGAAGAGCTATTTGAAGACTTCATTATCGAAGACGCTGAGCAAAGTGAAAATTATGGAAACCAAGAAGATGATAACCCTAAGCCGGTTTGTCCCACGGTGAGTAAAGCGCCGAAACAATTCAAGAGATCAAGGACCTTCAAATGCAATTCGTGCACGGAGACATTTACAAACTTCAACGAACTGAACGCTCACAAAAAGAGCCACGGCGAAAAGCGATTCGAATGCCCTACTTGCTCGAAACTGTTTTCAAGGCACTATCGACTGCGAGAGCACCTATTGATTCATACCAACCCCCGGCAACTTCCATGCCTTCTTTGCAGTAACACATATACAAATCACGGTAACCTGGATCGTCATATTCGCCATTGCCATAATAAAGAAAAGCCCCACTCGTGCGAAACCTGCGGAATGCGCTTCGCCAGAAAAGCCACTTTACAAGTACACGTCGCCATACATAGTGATGCGCGGAACTTTGAATGCGACAAATGTGGCAAAAGATTCAAGACAGAATATTATCTGAACGTGCACCGAAAATCGCATATTCCTGTTGAACTGCGTCTAGGAAAGCGTCCAACGCAAAAGAGAAAAGCTCAAATATGTATTTGCCACTACTGTGGTAAAACATCGAACACGCTTTCCCTTCACATCAACCATATGCGCACCCACTCCGTGGAGAAACCCTTTGAATGCCCGACATGCCAGAAACGTTTTAACTTCAAACAAGCCCTCAAAACTCACATGCTCCTGCACAGCGGCGAGAAGCCATTTTCCTGTGACGTCTGCAGTATGGCCTTTCGGCAAGTGGGACATCTGAAAGGACACAAAATTGCAGTTCACGCCGGGCTAAAGCAACACAAATGCCAGTACTGTGATAAGTCATTCGCGCTGCGCAGCAATCTGACCATACATGAAAGGTTGCACACCGGCAATAAACCGCACCAGTGCCCAATTTGCGGCAAGCGGTTCAACGACACAAACGGCTTGAAGAGGCACAAAATAGCACACGCTCGGAATGGACAAGTGGAGGCACCCTGCGCGGAGAAGCTAGTGAAGGACGAGGCAGCGAGCGTGAAAGTGGAAGATAGCTGCGACCTCAATCAGCTTGACGTCAGTTTAGATCAATTGAACGTGTATTTGGACGAGCTGGGAAACGAATACACGGAGATTATCGAAGCGGAAACCGCCCTTGAGACGACCATGTGA
- Protein Sequence
- MNMECMCRVCETIYGLRNMFEEENEELLLMLRSVANITITADDLLPKYLCNLCSHRLQKSYDFKLQCELTDQKLRDTIEPDKDHFLDTELETSQVNENTMEEMLYRRLYEKVVGGNATEESTFEDYATFDYIIAEEKGDVQKAENTAAQESPTIEANIAAVTSTTAEAAKQILNENAVVYVDNSKVEEIGSKFDVVEENAQFEDIIEEDYSEEMPVAEHIEPKKEEASEVPVVVPEPNDEQPHPSSESCVTEVEKMVLDPAPKETKPVVAKPPAKVKARKEPKVYSCGMCTETFDSSSKLNNHKRKHARYRFQCTVCNKSFGRSNGLRDHLLVHIGKKVSCHLCDRQCSNRGNLMRHIQQCHHKLKPYKCDHCSVKYSRKASLLAHIAAYHEETREHPCDICGRVFRTTFYLATHRRRHLPQPPRPPYHQAKRKEKISYCPQCGKKSRSLPTHIAHMRIHSEVKAYACQECPKRFHFKQSLLTHMMCHTGERPYKCEACGKSFRQVAHLRTHTKTVHMGAREFQCQYCRKFFTSSGTLKIHERLHTGEKPYACDICPSKFIDSKGLKKHKASAHSNDRFEATENSEEQGGDDDTNQENEDEDDSQMNELRAIPEEQVLDEGHFTIDQSNIYFDISNEYAEVEADDLLPKYICAICDQKLRQVHDFIKKCEETDQKLRKSYQLDQRHHRTRTQDGVPKKHNQREKRDVFANVKNSNKIPADSDDSYYEVNQLKRRASNDEDCIDFIYQSNENVEDIKSEEESSVGEKEFDNIDDDAEFLEEIQYTYSPVVASNSGIADQMGRPDNSVPQTHVFNVDEELFEDFIIEDAEQSENYGNQEDDNPKPVCPTVSKAPKQFKRSRTFKCNSCTETFTNFNELNAHKKSHGEKRFECPTCSKLFSRHYRLREHLLIHTNPRQLPCLLCSNTYTNHGNLDRHIRHCHNKEKPHSCETCGMRFARKATLQVHVAIHSDARNFECDKCGKRFKTEYYLNVHRKSHIPVELRLGKRPTQKRKAQICICHYCGKTSNTLSLHINHMRTHSVEKPFECPTCQKRFNFKQALKTHMLLHSGEKPFSCDVCSMAFRQVGHLKGHKIAVHAGLKQHKCQYCDKSFALRSNLTIHERLHTGNKPHQCPICGKRFNDTNGLKRHKIAHARNGQVEAPCAEKLVKDEAASVKVEDSCDLNQLDVSLDQLNVYLDELGNEYTEIIEAETALETTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -