Onig011933.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:1287195-1290404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00044 0.085 14.9 4.4 1 20 302 321 302 324 0.94 2 18 3.4e-06 0.00066 21.5 0.5 1 23 330 352 330 352 0.98 3 18 0.00021 0.04 15.9 4.1 1 23 358 380 358 380 0.98 4 18 3.3e-06 0.00064 21.6 2.6 1 23 386 408 386 408 0.97 5 18 1.8e-05 0.0035 19.3 1.5 1 23 414 436 414 436 0.98 6 18 2.4e-05 0.0048 18.8 0.7 1 23 442 464 442 464 0.97 7 18 1.1e-05 0.0021 20.0 0.5 2 23 471 492 470 492 0.97 8 18 2.5e-07 4.9e-05 25.1 0.1 1 23 498 520 498 520 0.98 9 18 2.9e-05 0.0058 18.6 1.0 1 23 526 548 526 548 0.97 10 18 2.1e-06 0.00042 22.2 0.6 1 23 554 576 554 576 0.98 11 18 5.4e-07 0.00011 24.1 0.9 1 23 582 604 582 604 0.97 12 18 8.4e-07 0.00016 23.5 1.0 1 23 610 632 610 632 0.98 13 18 2.3e-05 0.0045 18.9 1.0 1 23 638 660 638 660 0.99 14 18 6.3e-07 0.00012 23.8 0.8 1 23 666 688 666 688 0.97 15 18 0.00059 0.12 14.5 0.7 1 23 694 716 694 716 0.96 16 18 5.4e-06 0.0011 20.9 1.5 1 23 722 744 722 744 0.98 17 18 4.8e-07 9.3e-05 24.2 0.2 1 23 750 772 750 772 0.98 18 18 0.0001 0.02 16.9 2.7 1 23 778 800 778 800 0.96
Sequence Information
- Coding Sequence
- atgaatggagtCTACTGTTGTCGCGTTTGCGAGTCGCAGGACGAGTTGGAGATGCTGTTCAAAAAGGAAAACGGAGGGCTGTTGAATATGCTGATGGTCGTCACTGGTGTCTCGATCCATCAGGAGGATCGTCTTCCTCTCTGCATCTGCATCGACTGCTCGAACGAATTGAACCACGCCTACAAGTTTAAGATTCAATGTGAGAATACTAGTCACAAGTGCAGAAATAATCTTGCAATCTACACTGAGGAGAACCTACACGATGAAATGGATACTGATCGGAAAATATGCACGAACGACTATTTGAAGCGTGTTCCTGCGACCACTTACAATACCTGCATTCACATGCAGCCTGTACAAGACAGTTCACTAAAAAACGATCGAAAACATCCGATTGTGACTGCGATCCAGTCGGAGCGTATTGACTCAAACGATGCTCGACATGAGGAGGATTCGCTACTCAATGCGGACAACAGATACGGTCCTGACTACAATGAGGAAGAGAGCAGCAGCTACAGTAGCTACGATTCCGAAGCAGATATTACAGAAGAGGACAGCTATAACGGTGAAAACTCTCTGTCGGAAAGGGATTTGCAAAATTATCAGAACGAAAGCCATGCGTCAAAAAACGCCCTTGTGCCATCAATCGTAATTAAACAAGAGCTTGAACCAGATAGCTACACGGCGTTCACCAGTGGCGAGCCTGCAAAGATGTGGCGTCACGATCAAGCGGAACTGACCCCGTATACGAATGAAAGCAGTTCCCGGGATAATTCGTTCCACTCTAATTTTCCGATTAAACAAGAGAAACAGGACGATCCTAGCACACCCGATTTTGGTTACGATGATTCCAATCAGTTGGATGTTGAAGACAACGAGACGAAAACGAATTCGGGAAGACTGTTCCGCTGTGATGTTTGCCATAAAGCGTTTGGTCAAAAGCATTCGCTGAAGCATCACTTGTGGATACATTCAGACACGCGGCCATTCAAATGCGAGCAATGCGGCAAGGAGTTTGTGAACGTGTCGCTGTTGAAACAGCATCAACTGTTGCATTCCAACCCCGACGACTTCAGATGTGACTATTGTCACAGATTGTTTGCGTCGAAATCCAAGCTGAAAGAGCATCGCATGTTGCACTCCAACCCTGAGCTCTTTCGGTGCAAAGAATGCGGAAAGGACTTCCGCCATCGGTCGGCACTAAAGGAGCATCGCATTCTGCATTCGGACCCGAATGCGTTCAAGTGCAAAAAGTGCGGTCAAATATTTGAGCGAAAGATTCAGTTGAAGGAGCACACGATGTTGCATGAGAATCCGAACTTGTTCAAATGCAAGTTGTGTGGcaaagggtttatacgaatcAAAACGCTCCAGGCGCACGAGAAGTTACACGAGAGCGCCAGCCCGAACAAATGCGAGGAATGTGGCAAAACCTTTGTGTATGGTTCGAGCTTAACGGCGCATCGAAAACTGCATTTGAATCCGGAACTGTTCAAGTGCGAGGAGTGCGGCAAGATATTTGCCAATGCATCAGGACTGAAGGAGCATCAAAATATACATTTCAACCCGAACGGATTCAAATGCGAGCAGTGCGACCGCGTATACACGCGAATGTCTCTGTTGCGGGAGCACCGACTTCTGCACGAAAACCCCGACCGCTTCAAGTGCAGCGAGTGCGGGAAACTGTTTGCACAGAAGTCGCTGCTGAAAATTCACGTGAAGTTGCACGTGAATCCAGATCTCTTCAAGTGCGAAGTGTGCGGCAAAGTATTTAAGCAAGTCTCGCAGCTGAAGACGCATCGCCTGCTGCATGCGAAGCCCGACTTGTTCAAATGCGAGGAGTGCGGCAAGACGTTCTCGCAGGTCTCTGTCCTGAGAAACCACCAAAAGTTGCATTTACACCCCGACGGCTTCAAATGCGATCAATGCGGCAAAAATTATGCACGCGAGATCGAACTGAAGTACCATCAAATGAAGCACTCGAATCCTGATCTGTTTAAATGCGAAGAATGCGGCAAGCGCTTTGCGAACAACTCGGTGTTGAAGAAACACCAGGAGTTGCATTCGAACCCGAACGGTTTCAGATGCGAGCTGTGCAACAAGGTGTTCACTCGCATAACCGTTTTAGATAAGCATCGATTGTGGCACCTCAACCCCGAACTGTTCAAATGCGAGCTGTGTGGAAAGTCGTTCGCCCAATATCAATTGTTGACGACCCACCGGAAGCTGCACTCGAACCCGACCCTGTTTAAATGTGAAGAGTGCGGCAAGTCGCTATCGAACAGTTCGGCGTTGATTGCACACCAAAAGCTGCATTCGAATCCGCGACCCTTCAAGTGCGACGAATGCGGGAAATTGTTCAGCTACAAGTGCTCGTTGCTTCGCCATGAAAATGCCCATCTgagaaagaagaaaaagaaaatgaaagctGTGCACGAGGAGGAGGAGAATCCAATTGTTACAGTGGAAACTACCAGACCGACCCAGTTGATCGTACCTATTGATCCGTTCGGGTTGACCTCCTCAGCCACAGAATAA
- Protein Sequence
- MNGVYCCRVCESQDELEMLFKKENGGLLNMLMVVTGVSIHQEDRLPLCICIDCSNELNHAYKFKIQCENTSHKCRNNLAIYTEENLHDEMDTDRKICTNDYLKRVPATTYNTCIHMQPVQDSSLKNDRKHPIVTAIQSERIDSNDARHEEDSLLNADNRYGPDYNEEESSSYSSYDSEADITEEDSYNGENSLSERDLQNYQNESHASKNALVPSIVIKQELEPDSYTAFTSGEPAKMWRHDQAELTPYTNESSSRDNSFHSNFPIKQEKQDDPSTPDFGYDDSNQLDVEDNETKTNSGRLFRCDVCHKAFGQKHSLKHHLWIHSDTRPFKCEQCGKEFVNVSLLKQHQLLHSNPDDFRCDYCHRLFASKSKLKEHRMLHSNPELFRCKECGKDFRHRSALKEHRILHSDPNAFKCKKCGQIFERKIQLKEHTMLHENPNLFKCKLCGKGFIRIKTLQAHEKLHESASPNKCEECGKTFVYGSSLTAHRKLHLNPELFKCEECGKIFANASGLKEHQNIHFNPNGFKCEQCDRVYTRMSLLREHRLLHENPDRFKCSECGKLFAQKSLLKIHVKLHVNPDLFKCEVCGKVFKQVSQLKTHRLLHAKPDLFKCEECGKTFSQVSVLRNHQKLHLHPDGFKCDQCGKNYAREIELKYHQMKHSNPDLFKCEECGKRFANNSVLKKHQELHSNPNGFRCELCNKVFTRITVLDKHRLWHLNPELFKCELCGKSFAQYQLLTTHRKLHSNPTLFKCEECGKSLSNSSALIAHQKLHSNPRPFKCDECGKLFSYKCSLLRHENAHLRKKKKKMKAVHEEEENPIVTVETTRPTQLIVPIDPFGLTSSATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -