Onig003280.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- Jrkl
- Assembly
- GCA_963942545.1
- Location
- OZ012659.1:32523557-32525471[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 7.6e-05 23.9 0.0 12 41 26 54 24 58 0.79
Sequence Information
- Coding Sequence
- ATGCCCAGAAATCGTCCAAGGATCACCGCGAAAGCGGCTTGGAACGAAAAAGACCTAGTCAACGTTAAAACTGCTATTGAAAGAGGGATGTCAAAAAGGAAAGCAGCAAAAACACATAACATTCCGTTTACCACATTAAGAGACAgacttaaaaatcaaaatatgtgCAGTCCACGACTAGGACGTAGACCAATTTTTAATCAGCAGCAAGAACGAGAAATAGCTCAACAAGTGAAGCTTTTAGGCCAAACGGCAGGAATGGACTGGGTGCAGGGTTTCATGAGACGCAACCCTTCTGTAACTGTTCGCAAAGCTGAAGCAACAAGCTTGAATAGGGTTTCTGCATTTAATAGAGAAGAAATAACTCGCTTCTACAATATGCTTGGTGATGTCATGGAGAAGCATAAGTTCACTCCCAATAACATCTATAATGCTGAGGAGACAGGTGTTACAACCATTACAGACCCAGGTAAAGTGCTTGCAGAGAAAGGCCAACGAAGAGTGGGAGCAGTGACAAGCGGCGAACGAGGCAGGAACATAACAGTTATGTGTGCAATGAGTGCGGCTGGAAACTTCATACCACCAATGTTCATCTTTCCCAGACAGAGAATGACACCATTATTGGAAAAGGATGGACCATTTGGTGCTCTCTACGCCAACTCAAAGAATGGCTGGATAAACGAAGATATATTTGTCGAGTGGCTTAAACATTTTGTAGCATATGGCAAACCTACACAAGAATCTCCTGTGCTTTTAATACTTGATAACCATAGCAGTCACATTTCGCTTTCAGCTTTCAActattgcaaagaaaatcatATTGTAATGCTTTCGATTCCACCACACAGCTCTCACAGAACTCAACCTCTTGGTGTGTCTTTCTTTGGACCCCTAAAGGCTGCCTACAGGCAAGAATGCAACATGCACATGAAGACACATTTGATGGCGAAAATAACTCCGTATGATGTTGCAGGTCTATTCAATAAAGCATATGCGCAAGTTGCAAATATAAGCAAAGGAGAAGCTGGATTTCGAGCCACGGGAATATTCCCTTTAAACCCGAACGTTTTCACCGAGCAAGACTTCTTGGCAGCATCGTTAATGGCTCAAAATTCAGACCAACCCAATCAAATCGATGATAATGTTGATGATTCTGAAACTGCAGAATTTTGTGACACAACTGCGAATGAGGAGCCTGCATCATTTCTACCCAGTCCATTGCTTACGACGCCAAACCTAGAATTTGAACTTTCTGGTCATAGGCCTAAAACACCTACCCCTAGTCGATCTAATGAGCTAAGGTACGCCGCCAATAAATCAACTGTTCCAAGACCATCTAATCGGGATCTATACGATGAACAAAGACAAATTCCTCCGGCATTTTATGATATAGCTAAGACCCCAACTACAGCACCATCTTCTAAACCAgAAGGTTATATTTGTGATTTATGTGCCAAAGACTAA
- Protein Sequence
- MPRNRPRITAKAAWNEKDLVNVKTAIERGMSKRKAAKTHNIPFTTLRDRLKNQNMCSPRLGRRPIFNQQQEREIAQQVKLLGQTAGMDWVQGFMRRNPSVTVRKAEATSLNRVSAFNREEITRFYNMLGDVMEKHKFTPNNIYNAEETGVTTITDPGKVLAEKGQRRVGAVTSGERGRNITVMCAMSAAGNFIPPMFIFPRQRMTPLLEKDGPFGALYANSKNGWINEDIFVEWLKHFVAYGKPTQESPVLLILDNHSSHISLSAFNYCKENHIVMLSIPPHSSHRTQPLGVSFFGPLKAAYRQECNMHMKTHLMAKITPYDVAGLFNKAYAQVANISKGEAGFRATGIFPLNPNVFTEQDFLAASLMAQNSDQPNQIDDNVDDSETAEFCDTTANEEPASFLPSPLLTTPNLEFELSGHRPKTPTPSRSNELRYAANKSTVPRPSNRDLYDEQRQIPPAFYDIAKTPTTAPSSKPEGYICDLCAKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127316;
- 90% Identity
- -
- 80% Identity
- -